Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr2.810 Acer truncatum HOM05D006821 ORTHO05D008740 8.3e-180 633.6 331 100.0
Ciclev10001807m.g Citrus clementina HOM05D006821 ORTHO05D008740 9.3e-131 470.7 330 73.3
Manes.09G153500 Manihot esculenta HOM05D006821 ORTHO05D008740 3.8e-116 422.2 325 68.3
Duzib128G0425 Durio zibethinus HOM05D006821 ORTHO05D008740 8.4e-116 421.0 328 65.9
Duzib177G0830 Durio zibethinus HOM05D006821 ORTHO05D008740 1.1e-115 420.6 328 65.9
COL.COLO4_15343 Corchorus olitorius HOM05D006821 ORTHO05D008740 3.2e-115 419.1 328 64.9
Manes.08G134300 Manihot esculenta HOM05D006821 ORTHO05D008740 6.0e-114 414.8 325 67.4
Thecc.05G283900 Theobroma cacao HOM05D006821 ORTHO05D008740 1.3e-113 413.7 328 65.5
Gohir.D13G107900 Gossypium hirsutum HOM05D006821 ORTHO05D008740 1.9e-112 409.8 331 63.1
Gorai.013G120900 Gossypium raimondii HOM05D006821 ORTHO05D008740 4.3e-112 408.7 331 62.8
TAR633G1083 Trochodendron aralioides HOM05D006821 ORTHO05D008740 1.6e-111 406.8 330 66.1
Gohir.A13G104500 Gossypium hirsutum HOM05D006821 ORTHO05D008740 8.1e-111 404.4 331 62.5
TWI56G0757 Tripterygium wilfordii HOM05D006821 ORTHO05D008740 1.8e-110 403.3 325 66.2
CSS0006427 Camellia sinensis var. sinensis HOM05D006821 ORTHO05D008740 1.2e-109 400.6 331 65.3
TAR362G0286 Trochodendron aralioides HOM05D006821 ORTHO05D008740 2.6e-109 399.4 327 65.4
Hma1.2p1_0195F.1_g084560 Hydrangea macrophylla HOM05D006821 ORTHO05D008740 1.3e-108 397.1 329 63.5
Prupe.6G342700 Prunus persica HOM05D006821 ORTHO05D008740 1.7e-108 396.7 326 65.3
Potri.005G052900 Populus trichocarpa HOM05D006821 ORTHO05D008740 2.9e-108 396.0 328 64.9
RcHm_v2.0_Chr3g0451171 Rosa chinensis HOM05D006821 ORTHO05D008740 2.5e-107 392.9 332 63.0
Actinidia18357 Actinidia chinensis HOM05D006821 ORTHO05D008740 3.2e-107 392.5 327 63.6
Potri.013G040500 Populus trichocarpa HOM05D006821 ORTHO05D008740 3.2e-107 392.5 334 62.6
Cfa006429 Carpinus fangiana HOM05D006821 ORTHO05D008740 1.6e-106 390.2 333 61.6
Haze_04355 Corylus avellana HOM05D006821 ORTHO05D008740 6.0e-106 388.3 333 60.7
Nitab4.5_0012228g0010 Nicotiana tabacum HOM05D006821 ORTHO05D008740 8.7e-105 384.4 327 62.1
FAN09G4578 Fragaria x ananassa HOM05D006821 ORTHO05D008740 3.3e-104 382.5 332 61.7
FAN02G2705 Fragaria x ananassa HOM05D006821 ORTHO05D008740 7.4e-104 381.3 332 61.4
FvH4_6g02990 Fragaria vesca HOM05D006821 ORTHO05D008740 9.6e-104 380.9 332 61.1
MD04G1224000 Malus domestica HOM05D006821 ORTHO05D008740 9.6e-104 380.9 326 63.5
Cc02_g30600 Coffea canephora HOM05D006821 ORTHO05D008740 1.3e-103 380.6 327 58.4
CANSAT54G2350 Cannabis sativa HOM05D006821 ORTHO05D008740 3.7e-103 379.0 328 61.0
CiPaw.07G067000 Carya illinoinensis HOM05D006821 ORTHO05D008740 4.8e-103 378.6 328 59.8
Dinv10030 Davidia involucrata HOM05D006821 ORTHO05D008740 4.8e-103 378.6 311 65.6
FAN05G4221 Fragaria x ananassa HOM05D006821 ORTHO05D008740 4.8e-103 378.6 332 60.8
FAN05G1836 Fragaria x ananassa HOM05D006821 ORTHO05D008740 1.4e-102 377.1 332 60.8
FAN14G2672 Fragaria x ananassa HOM05D006821 ORTHO05D008740 1.4e-102 377.1 332 60.8
Glyma.19G244500 Glycine max HOM05D006821 ORTHO05D008740 1.8e-102 376.7 327 61.8
MBI11_g26138_MAGBIO Magnolia biondii HOM05D006821 ORTHO05D008740 9.0e-102 374.4 331 61.6
MD12G1240800 Malus domestica HOM05D006821 ORTHO05D008740 1.2e-101 374.0 328 62.8
Glyma.03G246900 Glycine max HOM05D006821 ORTHO05D008740 4.5e-101 372.1 326 61.0
PGSC0003DMG400019432 Solanum tuberosum HOM05D006821 ORTHO05D008740 7.6e-101 371.3 328 60.4
CAN.G134.100 Capsicum annuum HOM05D006821 ORTHO05D008740 1.7e-100 370.2 331 60.1
Oeu038441.1 Olea europaea HOM05D006821 ORTHO05D008740 2.5e-99 366.3 329 57.4
Nitab4.5_0001592g0080 Nicotiana tabacum HOM05D006821 ORTHO05D008740 4.2e-99 365.5 345 57.4
Peaxi162Scf00282g00328 Petunia axillaris HOM05D006821 ORTHO05D008740 4.2e-99 365.5 328 59.1
Sc20g0000300 Simmondsia chinensis HOM05D006821 ORTHO05D008740 4.2e-99 365.5 328 59.8
Sopen01g041020 Solanum pennellii HOM05D006821 ORTHO05D008740 9.3e-99 364.4 328 59.1
QL03p025768 Quercus lobata HOM05D006821 ORTHO05D008740 1.2e-98 364.0 387 52.5
arahy.Tifrunner.gnm1.ann1.7SV4PL Arachis hypogaea HOM05D006821 ORTHO05D008740 1.6e-98 363.6 330 57.6
Solyc01g097350.4 Solanum lycopersicum HOM05D006821 ORTHO05D008740 1.6e-98 363.6 327 59.0
Aqoxy2G03492 Aquilegia oxysepala HOM05D006821 ORTHO05D008740 1.3e-97 360.5 326 60.4
Sabra05G0046500 Salix brachista HOM05D006821 ORTHO05D008740 1.3e-97 360.5 382 55.0
Lj1g0025723 Lotus japonicus HOM05D006821 ORTHO05D008740 4.3e-96 355.5 329 59.3
GSVIVG01021794001 Vitis vinifera HOM05D006821 ORTHO05D008740 5.7e-96 355.1 326 60.4
ClCG02G016590 Citrullus lanatus HOM05D006821 ORTHO05D008740 8.2e-95 351.3 332 58.1
Phvul.006G101500 Phaseolus vulgaris HOM05D006821 ORTHO05D008740 8.2e-95 351.3 332 56.6
AUR62004944 Chenopodium quinoa HOM05D006821 ORTHO05D008740 9.0e-94 347.8 328 57.6
Ca_09420_v3 Cicer arietinum L. HOM05D006821 ORTHO05D008740 4.5e-93 345.5 329 57.1
Lalb_Chr04g0262251 Lupinus albus HOM05D006821 ORTHO05D008740 5.9e-93 345.1 327 55.4
Medtr7g115070 Medicago truncatula HOM05D006821 ORTHO05D008740 5.9e-93 345.1 333 56.8
PSO210G3560 Papaver somniferum HOM05D006821 ORTHO05D008740 5.9e-93 345.1 331 55.6
PSO210G3856 Papaver somniferum HOM05D006821 ORTHO05D008740 5.9e-93 345.1 331 55.6
THA.LOC104821676 Tarenaya hassleriana HOM05D006821 ORTHO05D008740 2.9e-92 342.8 327 56.3
PSO461G0046 Papaver somniferum HOM05D006821 ORTHO05D008740 6.5e-92 341.7 328 54.9
AUR62001014 Chenopodium quinoa HOM05D006821 ORTHO05D008740 8.5e-92 341.3 328 56.7
Migut.N01911 Erythranthe guttata HOM05D006821 ORTHO05D008740 5.5e-91 338.6 331 54.4
Thhalv10004570m.g Eutrema salsugineum HOM05D006821 ORTHO05D008740 9.4e-91 337.8 329 54.1
VMungo0540G1649 Vigna mungo HOM05D006821 ORTHO05D008740 1.2e-90 337.4 334 54.8
Hund22116 Selenicereus undatus HOM05D006821 ORTHO05D008740 1.6e-90 337.0 326 55.5
CsaV3_2G004180 Cucumis sativus L. HOM05D006821 ORTHO05D008740 3.0e-89 332.8 330 56.1
DCAR_029732 Daucus carota HOM05D006821 ORTHO05D008740 3.0e-89 332.8 328 55.8
Sed0012709 Sechium edule HOM05D006821 ORTHO05D008740 2.0e-88 330.1 329 56.5
Sp2g20040 Schrenkiella parvula HOM05D006821 ORTHO05D008740 2.8e-87 326.2 328 52.7
Carub.0006s2610 Capsella rubella HOM05D006821 ORTHO05D008740 6.9e-86 321.6 333 52.3
Psat2g125040 Pisum sativum HOM05D006821 ORTHO05D008740 3.4e-85 319.3 324 55.6
BcaB04g19632 Brassica carinata HOM05D006821 ORTHO05D008740 7.7e-85 318.2 332 51.8
BraA09t36137Z Brassica rapa HOM05D006821 ORTHO05D008740 2.2e-84 316.6 332 51.2
Eucgr.H04340 Eucalyptus grandis HOM05D006821 ORTHO05D008740 2.9e-84 316.2 324 53.4
ATR0606G003 Amborella trichopoda HOM05D006821 ORTHO05D008740 1.1e-83 314.3 333 51.4
Aa31LG11G8550 Aethionema arabicum HOM05D006821 ORTHO05D008740 1.4e-83 313.9 326 51.5
A09p04980 Brassica napus HOM05D006821 ORTHO05D008740 2.5e-83 313.2 332 50.9
EL10Ac4g09134 Beta vulgaris HOM05D006821 ORTHO05D008740 3.2e-83 312.8 407 45.7
SalBow4G1195 Salvia bowleyana HOM05D006821 ORTHO05D008740 4.2e-83 312.4 328 52.1
SalBow4G2420 Salvia bowleyana HOM05D006821 ORTHO05D008740 4.2e-83 312.4 328 52.1
BcaC04g23721 Brassica carinata HOM05D006821 ORTHO05D008740 5.5e-83 312.0 332 51.2
C09p05380 Brassica napus HOM05D006821 ORTHO05D008740 5.5e-83 312.0 332 51.2
Lj7A490T61 Lonicera japonica HOM05D006821 ORTHO05D008740 5.5e-83 312.0 386 47.7
Dinv04728 Davidia involucrata HOM05D006821 ORTHO05D008740 9.4e-83 311.2 210 75.7
BolC9t53466H Brassica oleracea HOM05D006821 ORTHO05D008740 2.7e-82 309.7 332 50.9
PGR004G1103 Punica granatum HOM05D006821 ORTHO05D008740 3.6e-82 309.3 326 51.5
AL6G40810 Arabidopsis lyrata HOM05D006821 ORTHO05D008740 7.9e-82 308.1 331 50.5
AT5G28830 Arabidopsis thaliana HOM05D006821 ORTHO05D008740 5.1e-81 305.4 322 51.6
TPR.G6944 Trifolium pratense HOM05D006821 ORTHO05D008740 1.5e-80 303.9 243 62.6
Cpa.g.sc117.86 Carica papaya HOM05D006821 ORTHO05D008740 1.7e-79 300.4 298 55.7
CARHR185340 Cardamine hirsuta HOM05D006821 ORTHO05D008740 2.2e-79 300.1 331 49.5
SEGI_00561 Sequoiadendron giganteum HOM05D006821 ORTHO05D008740 3.8e-76 289.3 339 49.6
MELO3C004376.2 Cucumis melo HOM05D006821 ORTHO05D008740 1.9e-75 287.0 332 52.1
HPP92_024348 Vanilla planifolia HOM05D006821 ORTHO05D008740 7.5e-72 275.0 331 46.2
CDE07G0065 Ceratophyllum demersum HOM05D006821 ORTHO05D008740 2.7e-69 266.5 331 45.0
CDE04G3363 Ceratophyllum demersum HOM05D006821 ORTHO05D008740 3.5e-69 266.2 333 46.2
PSO210G3711 Papaver somniferum HOM05D006821 ORTHO05D008740 2.7e-66 256.5 225 59.1
Nn1g02511 Nelumbo nucifera HOM05D006821 ORTHO05D008740 4.0e-65 252.7 217 61.3
Pp3c20_9750 Physcomitrium patens HOM05D006821 ORTHO05D008740 1.1e-51 208.0 336 36.9
Mapoly0083s0056 Marchantia polymorpha HOM05D006821 ORTHO05D008740 4.9e-47 192.6 339 34.2
AagrBONN_evm.TU.Sc2ySwM_228.4858 Anthoceros agrestis HOM05D006821 ORTHO05D007268 6.4e-39 165.6 331 32.3
Ah.07g201960 Amaranthus hybridus HOM05D006821 ORTHO05D008740 1.0e-36 158.3 327 31.5
CBR_g10979 Chara braunii HOM05D006821 ORTHO05D008740 4.0e-33 146.4 254 32.7
SMO259G0008 Selaginella moellendorffii HOM05D006821 ORTHO05D008740 1.1e-30 138.3 226 34.1
AagrBONN_evm.TU.Sc2ySwM_228.4145 Anthoceros agrestis HOM05D006821 ORTHO05D008740 2.3e-20 104.0 170 35.9
SMO169G0202 Selaginella moellendorffii HOM05D004759 ORTHO05D005722 4.6e-13 79.7 260 25.0
Os03g0250000 Oryza sativa ssp. japonica HOM05D004759 ORTHO05D005722 7.8e-13 79.0 257 25.3
Sc18g0006740 Simmondsia chinensis HOM05D004759 ORTHO05D005722 1.3e-12 78.2 264 26.1
Thecc.02G068600 Theobroma cacao HOM05D004759 ORTHO05D005722 1.3e-12 78.2 252 25.8
AUR62013108 Chenopodium quinoa HOM05D004759 ORTHO05D005722 1.7e-12 77.8 250 26.4
CARHR032970 Cardamine hirsuta HOM05D006821 ORTHO05D008740 5.1e-12 76.3 77 49.4
Potri.009G127800 Populus trichocarpa HOM05D004759 ORTHO05D005722 6.6e-12 75.9 248 25.0
GSVIVG01024116001 Vitis vinifera HOM05D004759 ORTHO05D005722 8.7e-12 75.5 248 25.0
AUR62010113 Chenopodium quinoa HOM05D004759 ORTHO05D005722 1.1e-11 75.1 250 25.6
Hma1.2p1_0032F.1_g019720 Hydrangea macrophylla HOM05D004759 ORTHO05D005722 1.1e-11 75.1 243 24.7
Cfa005166 Carpinus fangiana HOM05D004759 ORTHO05D005722 1.5e-11 74.7 248 24.2
Hund06394 Selenicereus undatus HOM05D004759 ORTHO05D005722 1.9e-11 74.3 245 24.9
MBI05_g15352_MAGBIO Magnolia biondii HOM05D004759 ORTHO05D005722 7.3e-11 72.4 348 23.3
Sabra09G0098000 Salix brachista HOM05D004759 ORTHO05D005722 7.3e-11 72.4 248 23.8
TAR365G0108 Trochodendron aralioides HOM05D006821 ORTHO05D008740 9.6e-11 72.0 136 39.0
Hund00052 Selenicereus undatus HOM05D004759 ORTHO05D005722 3.1e-09 67.0 261 24.9
Haze_02210 Corylus avellana HOM05D004759 ORTHO05D005722 5.3e-09 66.2 244 24.6
Ah.01g009490 Amaranthus hybridus HOM05D004759 ORTHO05D005722 6.9e-09 65.9 231 22.1
Sabra13G0037400 Salix brachista HOM05D006821 ORTHO05D349522 9.0e-09 65.5 51 60.8
HanXRQChr17g0555191 Helianthus annuus HOM05D004759 ORTHO05D005722 1.2e-08 65.1 243 23.0
Oeu002958.2 Olea europaea HOM05D004759 ORTHO05D005722 2.6e-08 63.9 234 21.4
EL10Ac9g21461 Beta vulgaris HOM05D004759 ORTHO05D005722 3.4e-08 63.5 227 22.5
CARHR247920 Cardamine hirsuta HOM05D004759 ORTHO05D005722 3.4e-08 63.5 228 22.4
unitig_899.g15603 Utricularia gibba HOM05D004759 ORTHO05D005722 3.4e-08 63.5 257 22.2
THA.LOC104824783 Tarenaya hassleriana HOM05D004759 ORTHO05D005722 5.8e-08 62.8 255 24.3
CARHR215930 Cardamine hirsuta HOM05D006821 ORTHO05D008740 1.3e-07 61.6 67 46.3
PSO170G3415 Papaver somniferum HOM05D004759 ORTHO05D005722 2.9e-07 60.5 228 21.1
Migut.B00161 Erythranthe guttata HOM05D004759 ORTHO05D005722 3.8e-07 60.1 275 21.1
Aa31LG6G16400 Aethionema arabicum HOM05D004759 ORTHO05D005722 8.4e-07 58.9 233 22.7
AT4G38810 Arabidopsis thaliana HOM05D004759 ORTHO05D005722 1.4e-06 58.2 226 22.1
AL7G10680 Arabidopsis lyrata HOM05D004759 ORTHO05D005722 1.9e-06 57.8 226 21.2
A06p48900 Brassica napus HOM05D004759 ORTHO05D005722 1.9e-06 57.8 226 20.8
BraA06t27758Z Brassica rapa HOM05D004759 ORTHO05D005722 1.9e-06 57.8 226 20.8
Thhalv10025463m.g Eutrema salsugineum HOM05D004759 ORTHO05D005722 1.9e-06 57.8 228 21.1
C07p63570 Brassica napus HOM05D004759 ORTHO05D005722 3.2e-06 57.0 227 21.1
BolC7t46770H Brassica oleracea HOM05D004759 ORTHO05D005722 3.2e-06 57.0 227 21.1
MELO3C028972.2 Cucumis melo HOM05D006821 ORTHO05D034973 4.2e-06 56.6 89 34.8
SGA_v2.0_scaffold32G13244 Striga asiatica HOM05D004759 ORTHO05D005722 4.2e-06 56.6 252 20.6
Aa31LG9G3980 Aethionema arabicum HOM05D006821 ORTHO05D059654 5.4e-06 56.2 59 49.2


User provided reference genes

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