Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr2.745 Acer truncatum HOM05D005899 ORTHO05D007445 1.3e-137 493.0 249 100.0
Atru.chr2.732 Acer truncatum HOM05D005899 ORTHO05D007445 2.0e-133 479.2 242 99.6
Atru.chr2.742 Acer truncatum HOM05D005899 ORTHO05D007445 4.2e-120 434.9 239 94.1
Ciclev10001941m.g Citrus clementina HOM05D005899 ORTHO05D007445 2.5e-104 382.5 242 81.4
Ciclev10001942m.g Citrus clementina HOM05D005899 ORTHO05D007445 2.8e-103 379.0 241 78.8
CiPaw.07G006200 Carya illinoinensis HOM05D005899 ORTHO05D007445 1.6e-98 363.2 244 77.0
RcHm_v2.0_Chr3g0451931 Rosa chinensis HOM05D005899 ORTHO05D007445 2.0e-98 362.8 244 75.0
Manes.09G155900 Manihot esculenta HOM05D005899 ORTHO05D007445 1.3e-97 360.1 246 74.4
Thecc.05G288500 Theobroma cacao HOM05D005899 ORTHO05D007445 1.5e-96 356.7 230 77.0
Cfa006459 Carpinus fangiana HOM05D005899 ORTHO05D007445 3.3e-96 355.5 237 75.5
FvH4_6g03430 Fragaria vesca HOM05D005899 ORTHO05D007445 4.3e-96 355.1 243 74.5
FAN02G1821 Fragaria x ananassa HOM05D005899 ORTHO05D007445 7.3e-96 354.4 243 74.1
FAN14G1139 Fragaria x ananassa HOM05D005899 ORTHO05D007445 7.3e-96 354.4 245 73.9
QL03p024530 Quercus lobata HOM05D005899 ORTHO05D007445 1.6e-95 353.2 240 73.3
Prupe.6G339900 Prunus persica HOM05D005899 ORTHO05D007445 1.1e-94 350.5 241 72.2
MD12G1237200 Malus domestica HOM05D005899 ORTHO05D007445 1.4e-94 350.1 238 75.2
arahy.Tifrunner.gnm1.ann1.41KAT0 Arachis hypogaea HOM05D005899 ORTHO05D007445 3.4e-93 345.5 238 73.1
Duzib177G0382 Durio zibethinus HOM05D005899 ORTHO05D007445 9.8e-93 344.0 235 72.8
Gorai.007G285000 Gossypium raimondii HOM05D005899 ORTHO05D007445 9.8e-93 344.0 237 71.7
Duzib128G1862 Durio zibethinus HOM05D005899 ORTHO05D007445 1.3e-92 343.6 237 73.8
Gohir.A11G255200 Gossypium hirsutum HOM05D005899 ORTHO05D007445 1.3e-92 343.6 237 71.7
TWI56G0091 Tripterygium wilfordii HOM05D005899 ORTHO05D007445 4.9e-92 341.7 246 71.1
Gohir.D11G264900 Gossypium hirsutum HOM05D005899 ORTHO05D007445 1.9e-91 339.7 237 71.3
Sabra15G0068500 Salix brachista HOM05D005899 ORTHO05D007445 1.2e-90 337.0 257 68.5
Dinv11553 Davidia involucrata HOM05D005899 ORTHO05D007445 1.6e-90 336.7 239 70.3
Medtr7g114750 Medicago truncatula HOM05D005899 ORTHO05D007445 1.6e-90 336.7 226 73.5
TPR.G6971 Trifolium pratense HOM05D005899 ORTHO05D007445 2.0e-90 336.3 226 73.9
Ca_09408_v3 Cicer arietinum L. HOM05D005899 ORTHO05D007445 1.0e-89 334.0 230 72.2
Potri.005G050600 Populus trichocarpa HOM05D005899 ORTHO05D007445 2.3e-89 332.8 260 67.3
Glyma.19G243000 Glycine max HOM05D005899 ORTHO05D007445 3.0e-89 332.4 232 71.6
Lalb_Chr15g0076871 Lupinus albus HOM05D005899 ORTHO05D007445 3.0e-89 332.4 231 69.3
Nn4g26305 Nelumbo nucifera HOM05D005899 ORTHO05D007445 3.9e-89 332.0 232 69.4
VMungo0540G1799 Vigna mungo HOM05D005899 ORTHO05D007445 3.9e-89 332.0 232 71.6
CSS0047717 Camellia sinensis var. sinensis HOM05D005899 ORTHO05D007445 5.0e-89 331.6 230 70.9
CANSAT54G2589 Cannabis sativa HOM05D005899 ORTHO05D007445 5.0e-89 331.6 249 69.1
Psat0s62g0080 Pisum sativum HOM05D005899 ORTHO05D007445 5.0e-89 331.6 228 72.4
TAR362G0589 Trochodendron aralioides HOM05D005899 ORTHO05D007445 1.5e-88 330.1 236 68.6
Phvul.006G099800 Phaseolus vulgaris HOM05D005899 ORTHO05D007445 2.5e-88 329.3 232 71.6
Lj1g0012490 Lotus japonicus HOM05D005899 ORTHO05D007445 3.3e-88 328.9 225 74.2
Cpa.g.sc117.66 Carica papaya HOM05D005899 ORTHO05D007445 9.5e-88 327.4 243 66.3
Eucgr.L01763 Eucalyptus grandis HOM05D005899 ORTHO05D007445 9.5e-88 327.4 244 69.3
BraA05t22981Z Brassica rapa HOM05D005899 ORTHO05D007445 1.6e-87 326.6 241 67.6
FAN05G2237 Fragaria x ananassa HOM05D005899 ORTHO05D007445 6.2e-87 324.7 242 69.8
CARHR079150 Cardamine hirsuta HOM05D005899 ORTHO05D007445 1.1e-86 323.9 243 66.3
DCAR_006615 Daucus carota HOM05D005899 ORTHO05D007445 1.1e-86 323.9 239 66.1
Aa31LG5G15270 Aethionema arabicum HOM05D005899 ORTHO05D007445 1.4e-86 323.6 234 66.2
PGR083G2155 Punica granatum HOM05D005899 ORTHO05D007445 1.4e-86 323.6 236 68.2
Actinidia05763 Actinidia chinensis HOM05D005899 ORTHO05D007445 1.8e-86 323.2 243 66.7
BolC5t34897H Brassica oleracea HOM05D005899 ORTHO05D007445 4.0e-86 322.0 242 65.7
AT3G04880 Arabidopsis thaliana HOM05D005899 ORTHO05D007445 8.9e-86 320.9 244 66.0
A05p42720 Brassica napus HOM05D005899 ORTHO05D007445 8.9e-86 320.9 241 66.0
C05p62440 Brassica napus HOM05D005899 ORTHO05D007445 1.2e-85 320.5 241 65.6
Lj7P487T33 Lonicera japonica HOM05D005899 ORTHO05D007445 4.4e-85 318.5 229 68.6
PSO761G0524 Papaver somniferum HOM05D005899 ORTHO05D007445 4.4e-85 318.5 231 68.4
BcaB03g11648 Brassica carinata HOM05D005899 ORTHO05D007445 7.5e-85 317.8 237 65.4
Sed0018425 Sechium edule HOM05D005899 ORTHO05D007445 1.3e-84 317.0 229 69.0
Oeu064565.1 Olea europaea HOM05D005899 ORTHO05D007445 1.1e-83 313.9 245 64.9
THA.LOC104802822 Tarenaya hassleriana HOM05D005899 ORTHO05D007445 1.1e-83 313.9 234 64.5
Migut.N00303 Erythranthe guttata HOM05D005899 ORTHO05D007445 9.2e-83 310.8 254 64.2
CDE05G2514 Ceratophyllum demersum HOM05D005899 ORTHO05D007445 1.2e-82 310.5 224 66.1
Lsat_1_v5_gn_6_53000 Lactuca sativa HOM05D005899 ORTHO05D007445 1.6e-82 310.1 229 68.1
Oeu044665.1 Olea europaea HOM05D005899 ORTHO05D007445 2.1e-82 309.7 243 65.4
SHI18352 Sapria himalayana HOM05D005899 ORTHO05D007445 2.7e-82 309.3 251 62.9
Solyc01g097800.3 Solanum lycopersicum HOM05D005899 ORTHO05D007445 6.0e-82 308.1 237 65.0
MBI01_g13083_MAGBIO Magnolia biondii HOM05D005899 ORTHO05D007445 7.8e-82 307.8 232 65.5
Rhsim07G0131800 Rhododendron simsii HOM05D005899 ORTHO05D007445 7.8e-82 307.8 248 65.3
ECA233G4289 Erigeron canadensis HOM05D005899 ORTHO05D007445 1.3e-81 307.0 234 62.4
PGSC0003DMG400022509 Solanum tuberosum HOM05D005899 ORTHO05D007445 1.3e-81 307.0 237 65.0
Cc02_g31760 Coffea canephora HOM05D005899 ORTHO05D007445 2.3e-81 306.2 236 64.8
SGA_v2.0_scaffold517G52669 Striga asiatica HOM05D005899 ORTHO05D007445 1.1e-80 303.9 229 65.9
Nitab4.5_0002361g0040 Nicotiana tabacum HOM05D005899 ORTHO05D007445 1.5e-80 303.5 244 62.3
vmacro14199 Vaccinium macrocarpon HOM05D005899 ORTHO05D007445 3.3e-80 302.4 254 63.0
Cfa006460 Carpinus fangiana HOM05D005899 ORTHO05D007445 7.3e-80 301.2 237 67.5
FAN09G0887 Fragaria x ananassa HOM05D005899 ORTHO05D007445 7.3e-80 301.2 221 70.1
Sp3g03700 Schrenkiella parvula HOM05D005899 ORTHO05D007445 1.2e-79 300.4 241 63.9
Sopen01g041400 Solanum pennellii HOM05D005899 ORTHO05D007445 1.2e-79 300.4 237 63.3
HanXRQChr02g0057281 Helianthus annuus HOM05D005899 ORTHO05D007445 2.8e-79 299.3 235 62.1
AUR62000983 Chenopodium quinoa HOM05D005899 ORTHO05D007445 1.8e-78 296.6 228 62.7
QL03p024564 Quercus lobata HOM05D005899 ORTHO05D007445 1.8e-78 296.6 239 66.5
EL10Ac4g09173 Beta vulgaris HOM05D005899 ORTHO05D007445 5.8e-77 291.6 251 59.4
Sabra15G0041400 Salix brachista HOM05D005899 ORTHO05D007445 8.4e-76 287.7 231 66.7
ATR0681G168 Amborella trichopoda HOM05D005899 ORTHO05D007445 1.9e-75 286.6 237 60.3
HPP92_023141 Vanilla planifolia HOM05D005899 ORTHO05D007445 2.1e-74 283.1 239 59.4
SEGI_33796 Sequoiadendron giganteum HOM05D005899 ORTHO05D007445 2.3e-73 279.6 227 60.4
Sc13g0006240 Simmondsia chinensis HOM05D005899 ORTHO05D007445 7.3e-72 274.6 242 57.4
Actinidia36917 Actinidia chinensis HOM05D005899 ORTHO05D007445 9.3e-67 257.7 211 62.6
Os01g0542000 Oryza sativa ssp. japonica HOM05D005899 ORTHO05D007445 2.1e-66 256.5 243 56.4
TPR.G8897 Trifolium pratense HOM05D005899 ORTHO05D007445 2.3e-65 253.1 189 66.1
Zm00001eb162780 Zea mays HOM05D005899 ORTHO05D007445 2.3e-65 253.1 235 54.9
CAN.G134.162 Capsicum annuum HOM05D005899 ORTHO05D007445 8.7e-65 251.1 248 56.0
SMO367G0143 Selaginella moellendorffii HOM05D005899 ORTHO05D007445 1.2e-61 240.7 232 50.9
AL3G15170 Arabidopsis lyrata HOM05D005899 ORTHO05D007445 8.4e-60 234.6 164 67.7
Eucgr.L02099 Eucalyptus grandis HOM05D005899 ORTHO05D007445 1.9e-59 233.4 157 72.0
unitig_744.g24569 Utricularia gibba HOM05D005899 ORTHO05D007445 9.6e-56 221.1 183 62.8
Haze_04330 Corylus avellana HOM05D005899 ORTHO05D007445 1.3e-55 220.7 204 57.8
BcaNung06538 Brassica carinata HOM05D005899 ORTHO05D007445 3.7e-55 219.2 168 64.9
Peaxi162Scf00404g00009 Petunia axillaris HOM05D005899 ORTHO05D007445 1.8e-54 216.9 171 62.0
Eucgr.L02186 Eucalyptus grandis HOM05D005899 ORTHO05D007445 2.6e-53 213.0 236 50.0
Pp3c6_4500 Physcomitrium patens HOM05D005899 ORTHO05D007445 6.4e-52 208.4 358 36.3
AUR62004985 Chenopodium quinoa HOM05D005899 ORTHO05D007445 1.9e-51 206.8 182 58.2
Medtr8g098320 Medicago truncatula HOM05D005899 ORTHO05D007445 7.1e-51 204.9 156 66.0
Eucgr.B01712 Eucalyptus grandis HOM05D005899 ORTHO05D007445 1.6e-50 203.8 244 50.8
AUR62004976 Chenopodium quinoa HOM05D005899 ORTHO05D007445 7.4e-48 194.9 161 60.2
Medtr7g114730 Medicago truncatula HOM05D005899 ORTHO05D007445 1.5e-45 187.2 161 60.9
FAN05G4109 Fragaria x ananassa HOM05D005899 ORTHO05D007445 3.0e-41 172.9 176 56.8
TPR.G21843 Trifolium pratense HOM05D005899 ORTHO05D007445 2.8e-39 166.4 116 76.7
Eucgr.B01710 Eucalyptus grandis HOM05D005899 ORTHO05D007445 1.2e-37 161.0 242 44.6
Nitab4.5_0013433g0050 Nicotiana tabacum HOM05D005899 ORTHO05D007445 5.5e-35 152.1 127 55.9
Carub.0003s0408 Capsella rubella HOM05D005899 ORTHO05D007445 2.4e-30 136.7 108 67.6
RcHm_v2.0_Chr7g0217791 Rosa chinensis HOM05D005899 ORTHO05D007445 5.9e-29 132.1 140 51.4
Ah.04g162380 Amaranthus hybridus HOM05D005899 ORTHO05D007445 7.2e-27 125.2 100 57.0
Sabra15G0068600 Salix brachista HOM05D005899 ORTHO05D007445 5.7e-24 115.5 82 68.3
Sabra15G0057000 Salix brachista HOM05D005899 ORTHO05D007445 2.8e-23 113.2 82 67.1
TAR140G0002 Trochodendron aralioides HOM05D005899 ORTHO05D007445 3.7e-23 112.8 102 54.9
TAR623G1042 Trochodendron aralioides HOM05D005899 ORTHO05D007445 3.7e-23 112.8 102 54.9
Sabra15G0056900 Salix brachista HOM05D005899 ORTHO05D007445 4.8e-23 112.5 62 79.0
TAR375G0990 Trochodendron aralioides HOM05D005899 ORTHO05D007445 8.2e-23 111.7 103 55.3
Carub.0003s0407 Capsella rubella HOM05D005899 ORTHO05D007445 1.8e-22 110.5 68 70.6
Dinv12477 Davidia involucrata HOM05D005899 ORTHO05D007445 2.4e-22 110.2 75 68.0
TAR636G1090 Trochodendron aralioides HOM05D005899 ORTHO05D007445 2.4e-22 110.2 102 52.9
AUR62000980 Chenopodium quinoa HOM05D005899 ORTHO05D007445 2.6e-21 106.7 86 62.8
Cfa006462 Carpinus fangiana HOM05D005899 ORTHO05D007445 7.2e-19 98.6 76 68.4
PRCOL_00001982 Prasinoderma coloniale HOM05D005899 ORTHO05D007445 2.6e-16 90.1 172 34.9
TAR625G0400 Trochodendron aralioides HOM05D005899 ORTHO05D007445 4.4e-16 89.4 87 50.6
FAN05G4786 Fragaria x ananassa HOM05D005899 ORTHO05D007445 5.9e-13 79.0 37 97.3
SGA_v2.0_scaffold31G12627 Striga asiatica HOM05D005899 ORTHO05D007445 1.7e-12 77.4 65 52.3
unitig_21.g20175 Utricularia gibba HOM05D005899 ORTHO05D007445 5.0e-12 75.9 64 60.9
TAR375G0306 Trochodendron aralioides HOM05D005899 ORTHO05D007445 1.9e-11 73.9 56 67.9
TAR365G0745 Trochodendron aralioides HOM05D005899 ORTHO05D007445 2.3e-09 67.0 54 55.6
FvH4_7g17710 Fragaria vesca HOM05D005899 ORTHO05D045384 6.7e-09 65.5 67 50.7
FAN06G4129 Fragaria x ananassa HOM05D005899 ORTHO05D045384 1.2e-08 64.7 69 47.8


User provided reference genes

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