Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr2.496 Acer truncatum HOM05D003767 ORTHO05D004507 1.2e-208 729.6 363 100.0
Ciclev10000728m.g Citrus clementina HOM05D003767 ORTHO05D004507 3.6e-184 648.3 363 88.2
Potri.013G026800 Populus trichocarpa HOM05D003767 ORTHO05D004507 8.2e-181 637.1 363 84.0
Duzib147G0043 Durio zibethinus HOM05D003767 ORTHO05D004507 7.7e-179 630.6 363 84.3
CSS0007130 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 1.0e-178 630.2 363 83.7
Gohir.A11G224810 Gossypium hirsutum HOM05D003767 ORTHO05D004507 7.2e-177 624.0 363 83.2
GSVIVG01022056001 Vitis vinifera HOM05D003767 ORTHO05D004507 9.4e-177 623.6 382 79.8
Thecc.02G212900 Theobroma cacao HOM05D003767 ORTHO05D004507 7.9e-176 620.5 363 82.1
Potri.005G038100 Populus trichocarpa HOM05D003767 ORTHO05D004507 1.8e-175 619.4 363 80.7
Gohir.D11G232600 Gossypium hirsutum HOM05D003767 ORTHO05D004507 5.1e-175 617.8 363 82.6
Gorai.003G066300 Gossypium raimondii HOM05D003767 ORTHO05D004507 2.6e-174 615.5 367 82.0
CiPaw.08G167300 Carya illinoinensis HOM05D003767 ORTHO05D004507 4.4e-174 614.8 363 82.1
TAR365G0614 Trochodendron aralioides HOM05D003767 ORTHO05D004507 4.4e-174 614.8 363 80.7
Manes.09G162900 Manihot esculenta HOM05D003767 ORTHO05D004507 1.3e-173 613.2 361 81.7
Cfa006539 Carpinus fangiana HOM05D003767 ORTHO05D004507 2.2e-173 612.5 363 82.6
TWI56G0745 Tripterygium wilfordii HOM05D003767 ORTHO05D004507 3.1e-172 608.6 363 80.4
Prupe.6G331000 Prunus persica HOM05D003767 ORTHO05D004507 9.1e-172 607.1 363 79.9
CANSAT54G0870 Cannabis sativa HOM05D003767 ORTHO05D004507 1.2e-171 606.7 363 80.2
Eucgr.H04452 Eucalyptus grandis HOM05D003767 ORTHO05D004507 7.7e-171 604.0 363 80.2
Actinidia23606 Actinidia chinensis HOM05D003767 ORTHO05D004507 2.2e-170 602.4 363 79.9
Manes.08G123500 Manihot esculenta HOM05D003767 ORTHO05D004507 2.2e-170 602.4 363 79.3
PGR031G1040 Punica granatum HOM05D003767 ORTHO05D004507 2.2e-170 602.4 363 79.6
vmacro05036 Vaccinium macrocarpon HOM05D003767 ORTHO05D004507 1.1e-169 600.1 363 80.7
Hma1.2p1_0666F.1_g199390 Hydrangea macrophylla HOM05D003767 ORTHO05D004507 1.4e-169 599.7 363 79.1
Sc09g0003380 Simmondsia chinensis HOM05D003767 ORTHO05D004507 1.9e-169 599.4 362 79.3
FvH4_6g05260 Fragaria vesca HOM05D003767 ORTHO05D004507 1.2e-168 596.7 363 78.8
Aqoxy5G00559 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 1.5e-166 589.7 362 79.8
Sp2g20600 Schrenkiella parvula HOM05D003767 ORTHO05D004507 5.7e-166 587.8 363 77.7
Oeu027914.1 Olea europaea HOM05D003767 ORTHO05D004507 9.7e-166 587.0 363 78.5
ECA238G2357 Erigeron canadensis HOM05D003767 ORTHO05D004507 2.2e-165 585.9 363 77.7
Thhalv10003956m.g Eutrema salsugineum HOM05D003767 ORTHO05D004507 1.1e-164 583.6 363 77.4
A09p05240 Brassica napus HOM05D003767 ORTHO05D004507 4.1e-164 581.6 363 76.3
CARHR185970 Cardamine hirsuta HOM05D003767 ORTHO05D004507 1.2e-163 580.1 363 76.9
PSO832G1867 Papaver somniferum HOM05D003767 ORTHO05D004507 1.2e-163 580.1 363 77.7
MELO3C015345.2 Cucumis melo HOM05D003767 ORTHO05D004507 1.6e-163 579.7 363 78.5
DCAR_029443 Daucus carota HOM05D003767 ORTHO05D004507 2.6e-163 578.9 363 75.8
DCAR_005538 Daucus carota HOM05D003767 ORTHO05D004507 3.5e-163 578.6 363 76.3
Glyma.19G237900 Glycine max HOM05D003767 ORTHO05D004507 5.9e-163 577.8 363 76.3
Sed0026847 Sechium edule HOM05D003767 ORTHO05D004507 7.7e-163 577.4 363 76.3
arahy.Tifrunner.gnm1.ann1.1T3PYK Arachis hypogaea HOM05D003767 ORTHO05D004507 1.7e-162 576.2 392 72.7
Phvul.006G094600 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 6.5e-162 574.3 363 74.9
C09p05700 Brassica napus HOM05D003767 ORTHO05D004507 8.5e-162 573.9 363 76.0
Glyma.19G237800 Glycine max HOM05D003767 ORTHO05D004507 8.5e-162 573.9 363 75.8
MD04G1210100 Malus domestica HOM05D003767 ORTHO05D004507 8.5e-162 573.9 363 76.3
Medtr7g113890 Medicago truncatula HOM05D003767 ORTHO05D004507 8.5e-162 573.9 363 74.4
THA.LOC104821704 Tarenaya hassleriana HOM05D003767 ORTHO05D004507 1.1e-161 573.5 363 76.0
BolC7t44598H Brassica oleracea HOM05D003767 ORTHO05D004507 1.5e-161 573.2 367 75.2
RcHm_v2.0_Chr3g0453991 Rosa chinensis HOM05D003767 ORTHO05D004507 9.4e-161 570.5 395 71.4
PSO210G1178 Papaver somniferum HOM05D003767 ORTHO05D004507 1.6e-160 569.7 363 76.6
RhsimUnG0080300 Rhododendron simsii HOM05D003767 ORTHO05D004507 1.6e-160 569.7 363 76.9
arahy.Tifrunner.gnm1.ann1.RYM43V Arachis hypogaea HOM05D003767 ORTHO05D004507 2.1e-160 569.3 392 72.2
TPR.G33164 Trifolium pratense HOM05D003767 ORTHO05D004507 4.7e-160 568.2 363 74.9
BcaNung02467 Brassica carinata HOM05D003767 ORTHO05D004507 6.1e-160 567.8 363 75.2
C07p40700 Brassica napus HOM05D003767 ORTHO05D004507 6.1e-160 567.8 363 75.2
Cpa.g.sc48.5 Carica papaya HOM05D003767 ORTHO05D004507 2.3e-159 565.8 363 77.1
BraA09t36163Z Brassica rapa HOM05D003767 ORTHO05D004507 4.0e-159 565.1 366 74.6
AL6G39640 Arabidopsis lyrata HOM05D003767 ORTHO05D004507 6.7e-159 564.3 363 74.4
A06p37610 Brassica napus HOM05D003767 ORTHO05D004507 8.8e-159 563.9 363 74.7
BraA06t26680Z Brassica rapa HOM05D003767 ORTHO05D004507 8.8e-159 563.9 363 74.7
Carub.0006s2517 Capsella rubella HOM05D003767 ORTHO05D004507 2.0e-158 562.8 363 73.6
Lj1g0009738 Lotus japonicus HOM05D003767 ORTHO05D004507 2.0e-158 562.8 363 74.4
Solyc01g098610.4 Solanum lycopersicum HOM05D003767 ORTHO05D004507 2.6e-158 562.4 363 76.0
PGSC0003DMG400028599 Solanum tuberosum HOM05D003767 ORTHO05D004507 3.3e-158 562.0 363 75.8
Ca_09376_v3 Cicer arietinum L. HOM05D003767 ORTHO05D004507 4.4e-158 561.6 361 74.5
Rhsim07G0179200 Rhododendron simsii HOM05D003767 ORTHO05D004507 5.7e-158 561.2 363 75.8
BcaNung04364 Brassica carinata HOM05D003767 ORTHO05D004507 7.5e-158 560.8 363 74.9
AUR62000859 Chenopodium quinoa HOM05D003767 ORTHO05D004507 7.5e-158 560.8 384 72.9
Migut.F01584 Erythranthe guttata HOM05D003767 ORTHO05D004507 7.5e-158 560.8 363 75.5
QL03p004251 Quercus lobata HOM05D003767 ORTHO05D004507 1.3e-157 560.1 380 74.2
ECA238G1346 Erigeron canadensis HOM05D003767 ORTHO05D004507 1.7e-157 559.7 363 74.7
MSTRG.8108 Avicennia marina HOM05D003767 ORTHO05D004507 2.2e-157 559.3 363 75.5
Aa31LG11G9150 Aethionema arabicum HOM05D003767 ORTHO05D004507 3.7e-157 558.5 363 74.4
Phvul.006G094700 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 4.8e-157 558.1 377 71.9
FAN14G0860 Fragaria x ananassa HOM05D003767 ORTHO05D004507 8.2e-157 557.4 363 75.5
FAN14G3644 Fragaria x ananassa HOM05D003767 ORTHO05D004507 8.2e-157 557.4 363 75.5
Lj1g0000488 Lotus japonicus HOM05D003767 ORTHO05D004507 1.1e-156 557.0 363 70.8
AT5G27380 Arabidopsis thaliana HOM05D003767 ORTHO05D004507 1.4e-156 556.6 361 74.0
Sopen01g042160 Solanum pennellii HOM05D003767 ORTHO05D004507 4.1e-156 555.1 378 73.5
Os11g0642800 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 5.3e-156 554.7 362 74.0
Lj9A681G36 Lonicera japonica HOM05D003767 ORTHO05D004507 1.2e-155 553.5 363 74.7
CSS0020414 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 1.7e-154 549.7 356 76.4
AUR62005115 Chenopodium quinoa HOM05D003767 ORTHO05D004507 2.2e-154 549.3 384 71.6
FAN05G2944 Fragaria x ananassa HOM05D003767 ORTHO05D004507 8.5e-154 547.4 363 74.4
EL10Ac4g09299 Beta vulgaris HOM05D003767 ORTHO05D004507 1.5e-153 546.6 361 75.1
Ca_09375_v3 Cicer arietinum L. HOM05D003767 ORTHO05D004507 1.5e-153 546.6 363 70.0
Lalb_Chr18g0045501 Lupinus albus HOM05D003767 ORTHO05D004507 1.9e-153 546.2 408 66.9
Zm00001eb137820 Zea mays HOM05D003767 ORTHO05D004507 2.5e-153 545.8 362 71.5
Cc02_g32590 Coffea canephora HOM05D003767 ORTHO05D004507 3.2e-153 545.4 363 74.7
MD12G1224500 Malus domestica HOM05D003767 ORTHO05D004507 5.5e-153 544.7 363 73.6
TPR.G33204 Trifolium pratense HOM05D003767 ORTHO05D004507 7.2e-153 544.3 391 67.5
Os12g0528400 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 1.2e-152 543.5 362 71.3
Aqoxy2G03198 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 2.7e-152 542.3 375 72.0
Nitab4.5_0004940g0030 Nicotiana tabacum HOM05D003767 ORTHO05D004507 8.0e-152 540.8 371 73.3
BcaC04g23683 Brassica carinata HOM05D003767 ORTHO05D004507 1.2e-150 537.0 363 72.2
BolC9t53499H Brassica oleracea HOM05D003767 ORTHO05D004507 5.7e-150 534.6 363 71.9
COL.COLO4_12128 Corchorus olitorius HOM05D003767 ORTHO05D004507 7.5e-150 534.3 363 73.8
Zm00001eb115490 Zea mays HOM05D003767 ORTHO05D004507 1.7e-149 533.1 362 72.4
Hund07038 Selenicereus undatus HOM05D003767 ORTHO05D004507 2.8e-149 532.3 361 72.6
Psat3g009920 Pisum sativum HOM05D003767 ORTHO05D004507 3.7e-149 531.9 363 68.6
BcaB04g19665 Brassica carinata HOM05D003767 ORTHO05D004507 4.8e-149 531.6 363 71.6
DCAR_002932 Daucus carota HOM05D003767 ORTHO05D004507 1.8e-148 529.6 363 72.2
unitig_26.g9470 Utricularia gibba HOM05D003767 ORTHO05D004507 1.8e-148 529.6 371 70.6
CSS0005723 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 3.5e-147 525.4 356 74.2
Medtr7g113880 Medicago truncatula HOM05D003767 ORTHO05D004507 7.7e-147 524.2 363 68.6
Glyma.03G240600 Glycine max HOM05D003767 ORTHO05D004507 8.6e-146 520.8 363 67.5
Glyma.19G237700 Glycine max HOM05D003767 ORTHO05D004507 8.6e-146 520.8 363 67.2
Lsat_1_v5_gn_2_64341 Lactuca sativa HOM05D003767 ORTHO05D004507 7.2e-145 517.7 360 71.7
Sabra05G0038000 Salix brachista HOM05D003767 ORTHO05D004507 7.2e-145 517.7 326 76.7
FAN09G3025 Fragaria x ananassa HOM05D003767 ORTHO05D004507 9.5e-145 517.3 363 70.8
SGA_v2.0_scaffold13G06464 Striga asiatica HOM05D003767 ORTHO05D004507 9.5e-145 517.3 364 71.4
CAN.G1134.12 Capsicum annuum HOM05D003767 ORTHO05D004507 4.7e-144 515.0 363 71.9
Phvul.006G094500 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 1.0e-143 513.8 363 66.7
VMungo0540G2084 Vigna mungo HOM05D003767 ORTHO05D004507 8.9e-143 510.8 364 69.2
Actinidia05727 Actinidia chinensis HOM05D003767 ORTHO05D004507 9.8e-142 507.3 363 70.8
SalBow6G1775 Salvia bowleyana HOM05D003767 ORTHO05D003551 2.8e-141 505.8 351 71.2
ClCG03G016760 Citrullus lanatus HOM05D003767 ORTHO05D004507 4.9e-141 505.0 503 55.9
Os12g0263000 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 6.3e-141 504.6 363 66.7
Nitab4.5_0001423g0150 Nicotiana tabacum HOM05D003767 ORTHO05D004507 1.4e-140 503.4 361 71.5
Psat3g009360 Pisum sativum HOM05D003767 ORTHO05D004507 7.5e-134 481.1 363 66.7
VMungo0540G0577 Vigna mungo HOM05D003767 ORTHO05D004507 1.7e-133 479.9 363 64.5
Ah.06g190170 Amaranthus hybridus HOM05D003767 ORTHO05D004507 1.8e-132 476.5 318 73.6
MBI17_g18114_MAGBIO Magnolia biondii HOM05D003767 ORTHO05D004507 3.2e-132 475.7 416 61.3
Nn1g08367 Nelumbo nucifera HOM05D003767 ORTHO05D004507 1.0e-130 470.7 289 76.8
HPP92_001826 Vanilla planifolia HOM05D003767 ORTHO05D004507 6.6e-130 468.0 363 65.0
Peaxi162Scf00434g00336 Petunia axillaris HOM05D003767 ORTHO05D004507 3.2e-124 449.1 363 65.0
Mapoly0002s0041 Marchantia polymorpha HOM05D003767 ORTHO05D004507 2.0e-118 429.9 366 58.2
FAN05G1904 Fragaria x ananassa HOM05D003767 ORTHO05D004507 4.6e-115 418.7 325 64.6
Pp3c1_36280 Physcomitrium patens HOM05D003767 ORTHO05D004507 1.0e-114 417.5 359 56.8
SMO271G0026 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 2.5e-113 412.9 358 57.0
HanXRQChr10g0295061 Helianthus annuus HOM05D003767 ORTHO05D004507 1.8e-111 406.8 243 79.0
HanXRQChr14g0446461 Helianthus annuus HOM05D003767 ORTHO05D004507 7.6e-102 374.8 215 80.5
Lalb_Chr15g0077051 Lupinus albus HOM05D003767 ORTHO05D004507 1.5e-97 360.5 219 78.5
ATR0626G007 Amborella trichopoda HOM05D003767 ORTHO05D004507 1.7e-93 347.1 216 76.9
Cre17.g708800 Chlamydomonas reinhardtii HOM05D003767 ORTHO05D004507 1.1e-92 344.4 370 50.5
PRCOL_00004575 Prasinoderma coloniale HOM05D003767 ORTHO05D004507 6.9e-87 325.1 361 47.9
CsaV3_1G039210 Cucumis sativus L. HOM05D003767 ORTHO05D004507 1.6e-83 313.9 210 74.3
MCO07G639 Micromonas commoda HOM05D003767 ORTHO05D004507 7.6e-78 295.0 385 44.2
Actinidia24503 Actinidia chinensis HOM05D003767 ORTHO05D004507 2.2e-69 266.9 270 55.2
Haze_04251 Corylus avellana HOM05D003767 ORTHO05D004507 4.2e-60 236.1 170 71.8
VMungo0540G2112 Vigna mungo HOM05D003767 ORTHO05D004507 5.5e-60 235.7 170 67.6
SMO304G0030 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 2.4e-55 220.3 277 47.7
Cfa024552 Carpinus fangiana HOM05D003767 ORTHO05D004507 1.1e-52 211.5 387 36.2
Eucgr.H04446 Eucalyptus grandis HOM05D003767 ORTHO05D004507 5.2e-50 202.6 114 80.7
Nn1g02104 Nelumbo nucifera HOM05D003767 ORTHO05D004507 7.4e-49 198.7 125 69.6
CBR_g15993 Chara braunii HOM05D003767 ORTHO05D004507 8.2e-48 195.3 367 34.1
CDE02G2107 Ceratophyllum demersum HOM05D000488 ORTHO05D000347 5.9e-46 189.1 124 69.4
ATR0626G021 Amborella trichopoda HOM05D003767 ORTHO05D004507 1.2e-43 181.4 121 71.1
FAN02G0487 Fragaria x ananassa HOM05D003767 ORTHO05D004507 1.2e-43 181.4 121 74.4
Nn1g08361 Nelumbo nucifera HOM05D003767 ORTHO05D004507 4.7e-43 179.5 121 70.2
SEGI_31082 Sequoiadendron giganteum HOM05D003767 ORTHO05D004507 4.0e-42 176.4 137 62.0
HanXRQChr14g0446471 Helianthus annuus HOM05D003767 ORTHO05D004507 6.7e-42 175.6 121 71.9
HanXRQChr10g0295071 Helianthus annuus HOM05D003767 ORTHO05D004507 4.4e-41 172.9 121 71.9
AagrBONN_evm.TU.Sc2ySwM_117.2518 Anthoceros agrestis HOM05D003767 ORTHO05D004507 6.3e-40 169.1 164 53.0
SGA_v2.0_scaffold499G52492 Striga asiatica HOM05D003767 ORTHO05D004507 8.3e-40 168.7 147 59.9
COL.COLO4_24985 Corchorus olitorius HOM05D003767 ORTHO05D004507 9.1e-39 165.2 110 77.3
COL.COLO4_10335 Corchorus olitorius HOM05D003767 ORTHO05D004507 2.9e-37 160.2 110 75.5
CSS0000499 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 8.8e-34 148.7 80 88.8
Lalb_Chr15g0077061 Lupinus albus HOM05D003767 ORTHO05D004507 3.7e-32 143.3 95 71.6
CAN.G299.1 Capsicum annuum HOM05D003767 ORTHO05D004507 3.1e-31 140.2 88 73.9
TAR636G2499 Trochodendron aralioides HOM05D003767 ORTHO05D004507 2.0e-30 137.5 77 83.1
TAR636G1925 Trochodendron aralioides HOM05D003767 ORTHO05D004507 2.9e-29 133.7 76 80.3
BcaC05g27416 Brassica carinata HOM05D003767 ORTHO05D004507 5.2e-26 122.9 83 69.9
Psat1g075760 Pisum sativum HOM05D003767 ORTHO05D004507 1.3e-24 118.2 84 64.3
RcHm_v2.0_Chr2g0172961 Rosa chinensis HOM05D003767 ORTHO05D004507 1.1e-23 115.2 61 88.5
Sabra13G0027500 Salix brachista HOM05D004613 ORTHO05D006095 5.4e-23 112.8 64 82.8
RcHm_v2.0_Chr2g0172971 Rosa chinensis HOM05D003767 ORTHO05D004507 1.9e-20 104.4 64 70.3
CAN.G73.7 Capsicum annuum HOM05D003767 ORTHO05D000047 2.0e-17 94.4 55 76.4
Sabra05G0037900 Salix brachista HOM05D003767 ORTHO05D004507 4.9e-16 89.7 53 84.9
BolC5t32099H Brassica oleracea HOM05D003767 ORTHO05D041347 9.2e-15 85.5 62 72.6
C05p33690 Brassica napus HOM05D003767 ORTHO05D041347 2.7e-14 84.0 46 87.0
RcHm_v2.0_Chr2g0172951 Rosa chinensis HOM05D003767 ORTHO05D004507 6.0e-14 82.8 51 68.6
SMO304G0024 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 2.5e-12 77.4 163 36.8
SEGI_25900 Sequoiadendron giganteum HOM05D003767 ORTHO05D004507 4.7e-11 73.2 55 65.5
SMO164G0207 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 6.2e-11 72.8 111 41.4


User provided reference genes

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