Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr2.3913 Acer truncatum HOM05D004098 ORTHO05D005215 0.0e+00 1266.9 637 100.0
Ciclev10007566m.g Citrus clementina HOM05D004098 ORTHO05D005215 3.7e-283 978.0 634 79.2
Manes.01G008000 Manihot esculenta HOM05D004098 ORTHO05D005215 6.5e-272 940.6 640 76.4
Prupe.6G036900 Prunus persica HOM05D004098 ORTHO05D005215 5.7e-268 927.5 638 75.1
Rhsim04G0006500 Rhododendron simsii HOM05D004098 ORTHO05D005215 5.7e-268 927.5 663 71.9
COL.COLO4_07798 Corchorus olitorius HOM05D004098 ORTHO05D005215 7.5e-268 927.2 627 75.9
Potri.011G170000 Populus trichocarpa HOM05D004098 ORTHO05D005215 1.3e-267 926.4 637 75.7
Dinv42526 Davidia involucrata HOM05D004098 ORTHO05D005215 3.7e-267 924.9 642 75.2
Dinv19633 Davidia involucrata HOM05D004098 ORTHO05D005215 1.6e-265 919.5 644 75.8
TAR626G1397 Trochodendron aralioides HOM05D004098 ORTHO05D005215 1.1e-263 913.3 652 73.9
Cfa016972 Carpinus fangiana HOM05D004098 ORTHO05D005215 2.5e-263 912.1 641 75.5
MD11G1047800 Malus domestica HOM05D004098 ORTHO05D005215 1.0e-261 906.7 637 73.3
TWI14G0432 Tripterygium wilfordii HOM05D004098 ORTHO05D005215 1.5e-260 902.9 635 74.6
TWI39G0299 Tripterygium wilfordii HOM05D004098 ORTHO05D005215 1.5e-260 902.9 635 74.6
Manes.05G203450 Manihot esculenta HOM05D004098 ORTHO05D005215 2.6e-260 902.1 642 74.3
MD03G1045600 Malus domestica HOM05D004098 ORTHO05D005215 7.5e-260 900.6 636 73.0
CiPaw.11G211200 Carya illinoinensis HOM05D004098 ORTHO05D005215 2.4e-258 895.6 647 74.2
Actinidia37106 Actinidia chinensis HOM05D004098 ORTHO05D005215 4.5e-257 891.3 644 72.5
Duzib268G0918 Durio zibethinus HOM05D004098 ORTHO05D005215 1.0e-256 890.2 633 73.6
Potri.001G473100 Populus trichocarpa HOM05D004098 ORTHO05D005215 1.0e-256 890.2 633 73.9
GSVIVG01014864001 Vitis vinifera HOM05D004098 ORTHO05D005215 1.3e-256 889.8 630 74.8
Oeu052018.2 Olea europaea HOM05D004098 ORTHO05D005215 3.3e-255 885.2 664 69.9
Hma1.2p1_0321F.1_g124430 Hydrangea macrophylla HOM05D004098 ORTHO05D005215 1.6e-254 882.9 639 73.6
PGR083G2418 Punica granatum HOM05D004098 ORTHO05D005215 2.1e-254 882.5 635 71.5
CANSAT11G1316 Cannabis sativa HOM05D004098 ORTHO05D005215 2.8e-254 882.1 641 71.9
Aqoxy4G02276 Aquilegia oxysepala HOM05D004098 ORTHO05D005215 2.3e-253 879.0 647 71.3
Gorai.009G455400 Gossypium raimondii HOM05D004098 ORTHO05D005215 2.3e-253 879.0 633 73.1
Thecc.07G000300 Theobroma cacao HOM05D004098 ORTHO05D005215 2.3e-253 879.0 631 72.7
Cc05_g15840 Coffea canephora HOM05D004098 ORTHO05D005215 3.0e-253 878.6 632 72.3
Gohir.D05G388800 Gossypium hirsutum HOM05D004098 ORTHO05D005215 6.8e-253 877.5 633 73.0
Peaxi162Scf00018g00064 Petunia axillaris HOM05D004098 ORTHO05D005215 2.6e-252 875.5 680 68.5
Gohir.A04G000400 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.8e-251 872.1 633 72.8
Gohir.D05G388750 Gossypium hirsutum HOM05D004098 ORTHO05D005215 4.9e-251 871.3 633 72.8
Sabra11G0137000 Salix brachista HOM05D004098 ORTHO05D005215 1.1e-250 870.2 712 67.0
FvH4_3g41350 Fragaria vesca HOM05D004098 ORTHO05D005215 4.5e-249 864.8 637 72.1
FAN16G0876 Fragaria x ananassa HOM05D004098 ORTHO05D005215 5.9e-249 864.4 637 71.6
FAN11G1160 Fragaria x ananassa HOM05D004098 ORTHO05D005215 1.0e-248 863.6 637 71.9
Phvul.005G006500 Phaseolus vulgaris HOM05D004098 ORTHO05D005215 1.0e-248 863.6 633 71.1
Lj3g0001916 Lotus japonicus HOM05D004098 ORTHO05D005215 2.9e-248 862.1 635 70.6
FAN21G3119 Fragaria x ananassa HOM05D004098 ORTHO05D005215 1.9e-247 859.4 637 71.4
Nitab4.5_0000611g0190 Nicotiana tabacum HOM05D004098 ORTHO05D005215 1.9e-247 859.4 689 67.8
arahy.Tifrunner.gnm1.ann1.36GALV Arachis hypogaea HOM05D004098 ORTHO05D005215 2.5e-247 859.0 658 70.2
RcHm_v2.0_Chr5g0074241 Rosa chinensis HOM05D004098 ORTHO05D005215 2.1e-246 855.9 637 71.6
VMungo1080G0600 Vigna mungo HOM05D004098 ORTHO05D005215 3.6e-246 855.1 636 71.2
arahy.Tifrunner.gnm1.ann1.FI1VU9 Arachis hypogaea HOM05D004098 ORTHO05D005215 1.0e-245 853.6 636 71.5
Lj8C185G3 Lonicera japonica HOM05D004098 ORTHO05D005215 1.4e-245 853.2 735 63.1
Eucgr.F01979 Eucalyptus grandis HOM05D004098 ORTHO05D005215 3.1e-245 852.0 637 70.5
DCAR_019936 Daucus carota HOM05D004098 ORTHO05D005215 6.8e-245 850.9 694 65.1
PSO675G3414 Papaver somniferum HOM05D004098 ORTHO05D005215 8.9e-245 850.5 652 70.2
Sc03g0011840 Simmondsia chinensis HOM05D004098 ORTHO05D005215 2.0e-244 849.4 645 68.1
FAN25G0546 Fragaria x ananassa HOM05D004098 ORTHO05D005215 3.4e-244 848.6 662 69.2
Nn2g14376 Nelumbo nucifera HOM05D004098 ORTHO05D005215 2.9e-243 845.5 647 70.6
QL08p000136 Quercus lobata HOM05D004098 ORTHO05D005215 4.9e-243 844.7 653 70.9
PSO541G4185 Papaver somniferum HOM05D004098 ORTHO05D005215 8.3e-243 844.0 652 69.5
THA.LOC104813473 Tarenaya hassleriana HOM05D004098 ORTHO05D005215 3.2e-242 842.0 632 70.1
Glyma.04G116700 Glycine max HOM05D004098 ORTHO05D005215 9.2e-242 840.5 635 70.1
SalBow8G2465 Salvia bowleyana HOM05D004098 ORTHO05D005215 4.6e-241 838.2 655 67.8
Glyma.06G320100 Glycine max HOM05D004098 ORTHO05D005215 3.3e-239 832.0 634 69.9
Lalb_Chr15g0079811 Lupinus albus HOM05D004098 ORTHO05D005215 4.3e-239 831.6 639 69.3
PGSC0003DMG400011237 Solanum tuberosum HOM05D004098 ORTHO05D005215 1.2e-238 830.1 644 69.4
Solyc10g005650.3 Solanum lycopersicum HOM05D004098 ORTHO05D005215 1.6e-238 829.7 638 69.7
Sopen10g001620 Solanum pennellii HOM05D004098 ORTHO05D005215 1.1e-237 827.0 638 69.6
DCAR_016814 Daucus carota HOM05D004098 ORTHO05D005215 1.4e-237 826.6 669 64.4
Migut.M01572 Erythranthe guttata HOM05D004098 ORTHO05D005215 3.1e-237 825.5 636 67.9
Lalb_Chr18g0048751 Lupinus albus HOM05D004098 ORTHO05D005215 1.2e-236 823.5 641 68.6
HanXRQChr05g0160701 Helianthus annuus HOM05D004098 ORTHO05D005215 9.8e-236 820.5 646 68.7
TPR.G16705 Trifolium pratense HOM05D004098 ORTHO05D005215 8.3e-235 817.4 640 69.2
Medtr3g009230 Medicago truncatula HOM05D004098 ORTHO05D005215 1.1e-234 817.0 632 69.6
Ca_14121_v3 Cicer arietinum L. HOM05D004098 ORTHO05D005215 7.1e-234 814.3 636 69.0
BraA03t10663Z Brassica rapa HOM05D004098 ORTHO05D005215 1.6e-233 813.1 669 63.8
CARHR269690 Cardamine hirsuta HOM05D004098 ORTHO05D005215 3.9e-232 808.5 651 65.4
CsaV3_3G003580 Cucumis sativus L. HOM05D004098 ORTHO05D005215 3.9e-232 808.5 641 68.5
Psat5g230760 Pisum sativum HOM05D004098 ORTHO05D005215 3.9e-232 808.5 640 68.4
MELO3C014028.2 Cucumis melo HOM05D004098 ORTHO05D005215 8.6e-232 807.4 642 68.2
Lsat_1_v5_gn_5_241 Lactuca sativa HOM05D004098 ORTHO05D005215 1.1e-231 807.0 646 68.1
BolC3t14019H Brassica oleracea HOM05D004098 ORTHO05D005215 7.3e-231 804.3 657 64.1
MSTRG.16125 Avicennia marina HOM05D004098 ORTHO05D005215 2.1e-230 802.7 650 65.1
Nitab4.5_0004488g0010 Nicotiana tabacum HOM05D004098 ORTHO05D005215 3.1e-229 798.9 687 64.0
C03p15880 Brassica napus HOM05D004098 ORTHO05D005215 1.2e-228 797.0 632 66.8
ECA246G1615 Erigeron canadensis HOM05D004098 ORTHO05D005215 3.4e-228 795.4 647 66.5
Thhalv10012791m.g Eutrema salsugineum HOM05D004098 ORTHO05D005215 7.6e-228 794.3 631 66.4
BcaB01g04390 Brassica carinata HOM05D004098 ORTHO05D005215 1.3e-227 793.5 632 66.8
AT5G56290 Arabidopsis thaliana HOM05D004098 ORTHO05D005215 8.3e-227 790.8 629 66.9
BraA10t43460Z Brassica rapa HOM05D004098 ORTHO05D005215 1.9e-226 789.6 663 63.2
AL8G31920 Arabidopsis lyrata HOM05D004098 ORTHO05D005215 2.4e-226 789.3 628 65.9
BcaC01g06414 Brassica carinata HOM05D004098 ORTHO05D005215 1.7e-224 783.1 632 66.0
Sp6g18140 Schrenkiella parvula HOM05D004098 ORTHO05D005215 8.6e-224 780.8 634 65.8
BolC9t57610H Brassica oleracea HOM05D004098 ORTHO05D005215 1.9e-223 779.6 636 65.1
Aa31LG3G12200 Aethionema arabicum HOM05D004098 ORTHO05D005215 5.6e-223 778.1 631 66.1
A03p13590 Brassica napus HOM05D004098 ORTHO05D005215 9.6e-223 777.3 632 66.0
ClCG10G003580 Citrullus lanatus HOM05D004098 ORTHO05D005215 2.1e-222 776.2 725 61.1
Carub.0008s1661 Capsella rubella HOM05D004098 ORTHO05D005215 2.4e-221 772.7 629 65.7
CAN.G492.64 Capsicum annuum HOM05D004098 ORTHO05D005215 2.4e-221 772.7 646 65.9
A10p13580 Brassica napus HOM05D004098 ORTHO05D005215 3.1e-221 772.3 632 65.3
CSS0008075 Camellia sinensis var. sinensis HOM05D004098 ORTHO05D005215 1.7e-219 766.5 571 69.7
Actinidia35440 Actinidia chinensis HOM05D004098 ORTHO05D005215 2.5e-215 752.7 603 67.0
C09p47570 Brassica napus HOM05D004098 ORTHO05D005215 1.6e-214 750.0 633 64.6
unitig_749.g13703 Utricularia gibba HOM05D004098 ORTHO05D005215 1.4e-213 746.9 644 61.2
AUR62043123 Chenopodium quinoa HOM05D004098 ORTHO05D005215 2.2e-211 739.6 633 62.2
Haze_09929 Corylus avellana HOM05D004098 ORTHO05D005215 9.0e-205 717.6 674 60.2
BcaB05g22257 Brassica carinata HOM05D004098 ORTHO05D005215 1.3e-203 713.8 668 58.7
SGA_v2.0_scaffold7G03562 Striga asiatica HOM05D004098 ORTHO05D005215 1.1e-202 710.7 691 59.5
EL10Ac4g07494 Beta vulgaris HOM05D004098 ORTHO05D005215 1.6e-198 696.8 638 60.2
MSTRG.7048 Avicennia marina HOM05D004098 ORTHO05D005215 1.6e-193 680.2 633 57.8
BcaC04g20111 Brassica carinata HOM05D004098 ORTHO05D005215 7.9e-193 677.9 630 59.7
Sed0000599 Sechium edule HOM05D004098 ORTHO05D005215 1.8e-192 676.8 564 67.0
ClCG00G000320 Citrullus lanatus HOM05D004098 ORTHO05D005215 1.3e-184 650.6 540 66.3
Hma1.2p1_0321F.1_g124440 Hydrangea macrophylla HOM05D004098 ORTHO05D005215 3.4e-180 636.0 440 73.4
ATR0751G081 Amborella trichopoda HOM05D004098 ORTHO05D005215 1.0e-171 607.8 622 54.8
Mapoly0064s0022 Marchantia polymorpha HOM05D004098 ORTHO05D005215 5.7e-167 592.0 659 51.0
HPP92_017855 Vanilla planifolia HOM05D004098 ORTHO05D005215 2.0e-159 567.0 451 65.4
Pp3c14_5170 Physcomitrium patens HOM05D004098 ORTHO05D005215 2.4e-157 560.1 658 50.5
vmacro09792 Vaccinium macrocarpon HOM05D004098 ORTHO05D005215 2.1e-153 547.0 537 56.8
Os08g0500100 Oryza sativa ssp. japonica HOM05D004098 ORTHO05D005215 6.1e-153 545.4 634 51.7
Zm00001eb199560 Zea mays HOM05D004098 ORTHO05D005215 8.3e-150 535.0 643 50.7
SMO361G0081 Selaginella moellendorffii HOM05D004098 ORTHO05D005215 9.1e-149 531.6 655 49.3
Zm00001eb034080 Zea mays HOM05D004098 ORTHO05D005215 8.5e-147 525.0 645 50.1
SEGI_20896 Sequoiadendron giganteum HOM05D004098 ORTHO05D005215 1.1e-130 471.5 454 57.0
CBR_g45681 Chara braunii HOM05D004098 ORTHO05D005215 4.9e-118 429.5 661 43.0
AUR62017765 Chenopodium quinoa HOM05D004098 ORTHO05D005215 1.1e-109 401.7 381 57.5
Ah.04g164860 Amaranthus hybridus HOM05D004098 ORTHO05D005215 4.5e-95 353.2 259 69.5
Ah.04g164850 Amaranthus hybridus HOM05D000499 ORTHO05D002036 2.9e-94 350.5 383 52.2
CDE05G2641 Ceratophyllum demersum HOM05D004098 ORTHO05D005215 1.1e-93 348.6 261 69.3
AUR62017764 Chenopodium quinoa HOM05D004098 ORTHO05D005215 1.2e-92 345.1 274 68.2
CDE05G2368 Ceratophyllum demersum HOM05D004098 ORTHO05D005215 5.3e-88 329.7 335 57.6
vmacro09791 Vaccinium macrocarpon HOM05D004098 ORTHO05D005215 1.5e-87 328.2 189 84.1
Cpa.g.sc12.52 Carica papaya HOM05D004098 ORTHO05D005215 1.0e-78 298.9 220 67.3
Cre14.g616750 Chlamydomonas reinhardtii HOM05D004098 ORTHO05D005215 2.5e-74 284.3 740 32.8
MCO05G026 Micromonas commoda HOM05D004098 ORTHO05D005215 9.0e-72 275.8 731 32.3
BolC2t07653H Brassica oleracea HOM05D004098 ORTHO05D005215 1.5e-71 275.0 383 44.9
Gohir.A13G000950 Gossypium hirsutum HOM05D004098 ORTHO05D005215 5.7e-66 256.5 301 51.2
Gohir.A04G000600 Gossypium hirsutum HOM05D004098 ORTHO05D005215 3.2e-61 240.7 165 74.5
C02p15370 Brassica napus HOM05D004098 ORTHO05D005215 1.4e-56 225.3 377 40.1
Cpa.g.sc12.51 Carica papaya HOM05D004098 ORTHO05D005215 1.7e-54 218.4 148 79.1
PRCOL_00000784 Prasinoderma coloniale HOM05D004098 ORTHO05D005215 1.0e-51 209.1 688 31.1
Gohir.A03G000002 Gossypium hirsutum HOM05D004098 ORTHO05D005215 3.0e-43 181.0 227 48.5
Gorai.009G455200 Gossypium raimondii HOM05D004098 ORTHO05D005215 3.5e-39 167.5 227 47.6
Gohir.A06G201500 Gossypium hirsutum HOM05D004098 ORTHO05D005215 4.5e-39 167.2 98 83.7
Gohir.1Z049490 Gossypium hirsutum HOM05D004098 ORTHO05D005215 7.2e-37 159.8 90 85.6
Lsat_1_v5_gn_8_35540 Lactuca sativa HOM05D004098 ORTHO05D005215 6.1e-36 156.8 164 54.9
Gohir.A12G000850 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.0e-35 156.0 229 42.8
Lsat_1_v5_gn_8_153381 Lactuca sativa HOM05D004098 ORTHO05D005215 1.0e-35 156.0 142 59.9
Gohir.A08G253600 Gossypium hirsutum HOM05D004098 ORTHO05D005215 7.5e-34 149.8 82 90.2
Gohir.A01G000401 Gossypium hirsutum HOM05D004098 ORTHO05D005215 3.1e-32 144.4 82 84.1
Gohir.1Z049406 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.6e-31 142.1 115 65.2
Gohir.A11G000300 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.7e-30 138.7 84 82.1
Lsat_1_v5_gn_6_79681 Lactuca sativa HOM05D004098 ORTHO05D005215 5.0e-30 137.1 148 53.4
Haze_09931 Corylus avellana HOM05D000997 ORTHO05D000828 2.8e-28 131.3 109 69.7
A02p09220 Brassica napus HOM05D004098 ORTHO05D005215 5.2e-27 127.1 93 74.2
Gohir.A03G000007 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.2e-26 125.9 67 85.1
Lsat_1_v5_gn_2_71300 Lactuca sativa HOM05D004098 ORTHO05D005215 5.7e-26 123.6 90 70.0
Hma1.2p1_0321F.1_g124420 Hydrangea macrophylla HOM05D004098 ORTHO05D005215 7.5e-26 123.2 157 54.1
Gohir.A05G415701 Gossypium hirsutum HOM05D002376 ORTHO05D004654 1.2e-23 115.9 70 80.0
Gohir.A12G000500 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.0e-22 112.8 61 86.9
Gohir.D03G178425 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.3e-22 111.7 61 85.2
MBI15_g32219_MAGBIO Magnolia biondii HOM05D004098 ORTHO05D005215 1.5e-21 109.0 129 57.4
Gohir.A07G135000 Gossypium hirsutum HOM05D004098 ORTHO05D005215 3.3e-21 107.8 60 86.7
Lsat_1_v5_gn_3_67900 Lactuca sativa HOM05D004098 ORTHO05D005215 3.0e-19 101.3 187 39.0
HPP92_017856 Vanilla planifolia HOM05D004098 ORTHO05D005215 1.4e-16 92.4 119 52.1
Gohir.A06G201400 Gossypium hirsutum HOM05D002376 ORTHO05D004654 3.0e-14 84.7 44 88.6
Gohir.A08G000028 Gossypium hirsutum HOM05D002376 ORTHO05D004654 6.6e-14 83.6 42 90.5
Gohir.A09G249700 Gossypium hirsutum HOM05D004098 ORTHO05D021823 1.1e-13 82.8 44 86.4
BcaB05g22258 Brassica carinata HOM05D004098 ORTHO05D021823 1.9e-13 82.0 44 84.1
SEGI_28507 Sequoiadendron giganteum HOM05D004098 ORTHO05D021823 1.6e-12 79.0 44 81.8
Gohir.1Z049433 Gossypium hirsutum HOM05D004098 ORTHO05D021823 3.6e-12 77.8 44 81.8
Cpa.g.sc12.49 Carica papaya HOM05D004098 ORTHO05D021823 1.1e-11 76.3 43 86.0
Gohir.A03G081400 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.4e-11 75.9 60 68.3
Cfa024256 Carpinus fangiana HOM05D032100 ORTHO05D126575 2.3e-11 75.1 215 30.7
Hma1.2p1_1190F.1_g265410 Hydrangea macrophylla HOM05D001237 ORTHO05D001827 1.2e-10 72.8 56 58.9
Lsat_1_v5_gn_9_105500 Lactuca sativa HOM05D004098 ORTHO05D001482 1.5e-10 72.4 91 47.3
TPR.G8441 Trifolium pratense HOM05D004098 ORTHO05D021823 7.5e-10 70.1 45 75.6
Gohir.A05G415601 Gossypium hirsutum HOM05D004098 ORTHO05D005215 5.4e-08 63.9 78 44.9
Gohir.A11G265400 Gossypium hirsutum HOM05D000055 ORTHO05D013390 5.4e-08 63.9 45 71.1
Hund01805 Selenicereus undatus HOM05D004098 ORTHO05D005215 7.0e-08 63.5 41 73.2
C02p15380 Brassica napus HOM05D004098 ORTHO05D005215 1.0e-06 59.7 144 35.4
Gohir.1Z049608 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.3e-06 58.5 61 50.8
Lsat_1_v5_gn_3_135720 Lactuca sativa HOM05D004098 ORTHO05D005215 3.9e-06 57.8 35 82.9


User provided reference genes

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