Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr2.3764 Acer truncatum HOM05D000435 ORTHO05D037936 6.4e-35 150.2 76 100.0
Atru.chr2.3749 Acer truncatum HOM05D000435 ORTHO05D000430 3.9e-32 141.0 75 92.0
Atru.chr2.3763 Acer truncatum HOM05D000435 ORTHO05D000430 5.2e-29 130.6 75 88.0
Gohir.A08G025300 Gossypium hirsutum HOM05D000435 ORTHO05D000430 7.5e-28 126.7 75 82.7
Gorai.004G033800 Gossypium raimondii HOM05D000435 ORTHO05D000430 7.5e-28 126.7 75 82.7
Gohir.D08G035800 Gossypium hirsutum HOM05D000435 ORTHO05D000430 2.2e-27 125.2 75 81.3
Manes.03G143200 Manihot esculenta HOM05D000435 ORTHO05D000430 9.2e-26 119.8 73 78.1
Dinv10357 Davidia involucrata HOM05D000435 ORTHO05D000430 1.2e-25 119.4 73 79.5
Thecc.07G008500 Theobroma cacao HOM05D000435 ORTHO05D000430 2.7e-25 118.2 75 78.7
GSVIVG01014733001 Vitis vinifera HOM05D000435 ORTHO05D000430 6.0e-25 117.1 72 75.0
Cfa016927 Carpinus fangiana HOM05D000435 ORTHO05D000430 1.3e-24 115.9 75 74.7
COL.COLO4_07733 Corchorus olitorius HOM05D003572 ORTHO05D004118 1.3e-24 115.9 76 77.6
CSS0004404 Camellia sinensis var. sinensis HOM05D000435 ORTHO05D000430 2.3e-24 115.2 73 78.1
CSS0032781 Camellia sinensis var. sinensis HOM05D000435 ORTHO05D000430 2.3e-24 115.2 73 78.1
Cpa.g.sc12.135 Carica papaya HOM05D000435 ORTHO05D000430 5.0e-24 114.0 75 74.7
Potri.001G370600 Populus trichocarpa HOM05D000435 ORTHO05D000430 8.6e-24 113.2 74 75.7
Ciclev10010223m.g Citrus clementina HOM05D000435 ORTHO05D000430 1.1e-23 112.8 74 78.4
CiPaw.11G206300 Carya illinoinensis HOM05D000435 ORTHO05D000430 1.5e-23 112.5 75 70.7
Nn2g15498 Nelumbo nucifera HOM05D000435 ORTHO05D000430 1.5e-23 112.5 72 72.2
Sabra16G0243600 Salix brachista HOM05D000435 ORTHO05D000430 1.5e-23 112.5 74 75.7
Haze_09858 Corylus avellana HOM05D000435 ORTHO05D000430 1.9e-23 112.1 73 74.0
MD11G1036200 Malus domestica HOM05D000435 ORTHO05D000430 1.9e-23 112.1 77 75.3
TAR627G0575 Trochodendron aralioides HOM05D003572 ORTHO05D004118 1.9e-23 112.1 74 73.0
Duzib170G0379 Durio zibethinus HOM05D000435 ORTHO05D000430 2.5e-23 111.7 74 75.7
vmacro09627 Vaccinium macrocarpon HOM05D000435 ORTHO05D000430 2.5e-23 111.7 73 75.3
A01p40340 Brassica napus HOM05D000435 ORTHO05D000430 5.6e-23 110.5 75 72.0
C01p51870 Brassica napus HOM05D000435 ORTHO05D000430 5.6e-23 110.5 75 72.0
BolC1t05135H Brassica oleracea HOM05D000435 ORTHO05D000430 5.6e-23 110.5 75 72.0
BraA01t04069Z Brassica rapa HOM05D000435 ORTHO05D000430 5.6e-23 110.5 75 72.0
Oeu005470.2 Olea europaea HOM05D000435 ORTHO05D000430 7.3e-23 110.2 75 70.7
Lj1A893T55 Lonicera japonica HOM05D000435 ORTHO05D000430 9.5e-23 109.8 73 68.5
TWI39G0143 Tripterygium wilfordii HOM05D000435 ORTHO05D000430 9.5e-23 109.8 76 71.1
Prupe.6G027000 Prunus persica HOM05D000435 ORTHO05D000430 1.6e-22 109.0 77 71.4
RcHm_v2.0_Chr5g0075901 Rosa chinensis HOM05D000435 ORTHO05D000430 2.8e-22 108.2 75 70.7
Thhalv10020198m.g Eutrema salsugineum HOM05D000435 ORTHO05D000430 4.7e-22 107.5 75 69.3
FAN25G2805 Fragaria x ananassa HOM05D000435 ORTHO05D000430 4.7e-22 107.5 75 70.7
FvH4_3g42410 Fragaria vesca HOM05D000435 ORTHO05D000430 6.2e-22 107.1 75 70.7
FAN11G3608 Fragaria x ananassa HOM05D000435 ORTHO05D000430 6.2e-22 107.1 75 70.7
FAN28G0967 Fragaria x ananassa HOM05D000435 ORTHO05D000430 6.2e-22 107.1 75 70.7
CARHR087810 Cardamine hirsuta HOM05D000435 ORTHO05D000430 8.1e-22 106.7 75 69.3
Sp3g11390 Schrenkiella parvula HOM05D000435 ORTHO05D000430 8.1e-22 106.7 75 68.0
FAN16G3565 Fragaria x ananassa HOM05D000435 ORTHO05D000430 1.1e-21 106.3 75 70.7
Carub.0003s1257 Capsella rubella HOM05D000435 ORTHO05D000430 1.4e-21 105.9 75 70.7
FAN21G0356 Fragaria x ananassa HOM05D000435 ORTHO05D000430 1.4e-21 105.9 75 69.3
Actinidia03625 Actinidia chinensis HOM05D000435 ORTHO05D000430 2.3e-21 105.1 73 69.9
Sc03g0011590 Simmondsia chinensis HOM05D000435 ORTHO05D000430 2.3e-21 105.1 74 63.5
QL08p003237 Quercus lobata HOM05D000435 ORTHO05D000430 3.1e-21 104.8 73 69.9
Glyma.18G074800 Glycine max HOM05D000435 ORTHO05D000430 5.2e-21 104.0 73 69.9
AT3G13220 Arabidopsis thaliana HOM05D000435 ORTHO05D000430 8.9e-21 103.2 75 68.0
CANSAT11G0821 Cannabis sativa HOM05D000435 ORTHO05D000430 8.9e-21 103.2 75 65.3
Medtr5g096390 Medicago truncatula HOM05D000435 ORTHO05D000430 1.2e-20 102.8 72 68.1
THA.LOC104815690 Tarenaya hassleriana HOM05D000435 ORTHO05D000430 1.2e-20 102.8 76 68.4
AL3G24980 Arabidopsis lyrata HOM05D000435 ORTHO05D000430 1.5e-20 102.4 75 68.0
AUR62035671 Chenopodium quinoa HOM05D000435 ORTHO05D000430 2.0e-20 102.1 73 65.8
Migut.M01629 Erythranthe guttata HOM05D000435 ORTHO05D000430 2.0e-20 102.1 74 68.9
Glyma.08G332100 Glycine max HOM05D000435 ORTHO05D000430 2.0e-20 102.1 73 68.5
Glyma.14G012000 Glycine max HOM05D000435 ORTHO05D000430 2.0e-20 102.1 72 69.4
AUR62017136 Chenopodium quinoa HOM05D000435 ORTHO05D000430 2.6e-20 101.7 73 65.8
ClCG10G004470 Citrullus lanatus HOM05D000435 ORTHO05D000430 2.6e-20 101.7 71 66.2
CsaV3_3G004300 Cucumis sativus L. HOM05D000435 ORTHO05D000430 3.4e-20 101.3 71 66.2
Lj6g0002997 Lotus japonicus HOM05D000435 ORTHO05D000430 4.4e-20 100.9 72 66.7
Phvul.006G059212 Phaseolus vulgaris HOM05D000435 ORTHO05D000430 4.4e-20 100.9 73 67.1
Ca_06413_v3 Cicer arietinum L. HOM05D000435 ORTHO05D000430 5.8e-20 100.5 72 69.4
MELO3C014121.2 Cucumis melo HOM05D000435 ORTHO05D000430 5.8e-20 100.5 71 66.2
HanXRQChr04g0114551 Helianthus annuus HOM05D000435 ORTHO05D000430 5.8e-20 100.5 73 64.4
Psat0s4150g0240 Pisum sativum HOM05D000435 ORTHO05D000430 5.8e-20 100.5 72 68.1
HanXRQChr11g0334421 Helianthus annuus HOM05D000435 ORTHO05D000430 7.5e-20 100.1 75 61.3
Lalb_Chr20g0114061 Lupinus albus HOM05D000435 ORTHO05D000430 9.9e-20 99.8 72 68.1
Sed0013125 Sechium edule HOM05D000435 ORTHO05D000430 1.3e-19 99.4 71 66.2
Glyma.02G302200 Glycine max HOM05D000435 ORTHO05D000430 1.7e-19 99.0 72 68.1
PSO541G1261 Papaver somniferum HOM05D000435 ORTHO05D000430 1.7e-19 99.0 75 65.3
PSO675G1718 Papaver somniferum HOM05D000435 ORTHO05D000430 2.2e-19 98.6 69 66.7
DCAR_017069 Daucus carota HOM05D000435 ORTHO05D000430 2.9e-19 98.2 75 62.7
Aa31LG8G420 Aethionema arabicum HOM05D000435 ORTHO05D000430 3.7e-19 97.8 75 64.0
Cc05_g15220 Coffea canephora HOM05D000435 ORTHO05D000430 3.7e-19 97.8 72 66.7
DCAR_013252 Daucus carota HOM05D000435 ORTHO05D000430 3.7e-19 97.8 75 64.0
Lsat_1_v5_gn_7_114141 Lactuca sativa HOM05D000435 ORTHO05D000430 4.9e-19 97.4 73 60.3
Peaxi162Scf00139g01031 Petunia axillaris HOM05D000435 ORTHO05D000430 4.9e-19 97.4 70 67.1
Phvul.008G280800 Phaseolus vulgaris HOM05D000435 ORTHO05D000430 6.4e-19 97.1 72 62.5
arahy.Tifrunner.gnm1.ann1.D8MFXN Arachis hypogaea HOM05D000435 ORTHO05D000430 1.1e-18 96.3 72 65.3
arahy.Tifrunner.gnm1.ann1.GGDJ84 Arachis hypogaea HOM05D000435 ORTHO05D000430 1.1e-18 96.3 72 65.3
SGA_v2.0_scaffold171G38846 Striga asiatica HOM05D000435 ORTHO05D000430 1.1e-18 96.3 76 65.8
Aqoxy3G03979 Aquilegia oxysepala HOM05D000435 ORTHO05D000430 1.4e-18 95.9 75 61.3
arahy.Tifrunner.gnm1.ann1.64V7P3 Arachis hypogaea HOM05D000435 ORTHO05D000430 2.4e-18 95.1 72 63.9
Ca_12447_v3 Cicer arietinum L. HOM05D000435 ORTHO05D000430 2.4e-18 95.1 74 68.9
VMungo0647G0856 Vigna mungo HOM05D000435 ORTHO05D000430 2.4e-18 95.1 72 61.1
Lalb_Chr10g0107501 Lupinus albus HOM05D000435 ORTHO05D000430 3.2e-18 94.7 82 61.0
Nitab4.5_0010643g0020 Nicotiana tabacum HOM05D000435 ORTHO05D000430 4.1e-18 94.4 70 67.1
Eucgr.F03676 Eucalyptus grandis HOM05D000435 ORTHO05D000430 5.4e-18 94.0 75 64.0
TPR.G1291 Trifolium pratense HOM05D000435 ORTHO05D000430 7.1e-18 93.6 73 63.0
Potri.011G094650 Populus trichocarpa HOM05D000435 ORTHO05D000430 9.2e-18 93.2 74 66.2
arahy.Tifrunner.gnm1.ann1.1C3JIX Arachis hypogaea HOM05D000435 ORTHO05D000430 1.2e-17 92.8 72 68.1
EL10Ac4g07534 Beta vulgaris HOM05D000435 ORTHO05D000430 1.2e-17 92.8 75 64.0
arahy.Tifrunner.gnm1.ann1.2NP6SE Arachis hypogaea HOM05D000435 ORTHO05D000430 1.6e-17 92.4 72 66.7
MBI15_g38526_MAGBIO Magnolia biondii HOM05D000435 ORTHO05D000430 3.5e-17 91.3 75 64.0
ATR0751G105 Amborella trichopoda HOM05D000435 ORTHO05D000430 6.0e-17 90.5 75 58.7
Sopen07g033980 Solanum pennellii HOM05D003572 ORTHO05D004118 6.0e-17 90.5 70 65.7
Psat0s3858g0080 Pisum sativum HOM05D000435 ORTHO05D000430 1.3e-16 89.4 74 66.2
Actinidia00846 Actinidia chinensis HOM05D000435 ORTHO05D037936 2.3e-16 88.6 68 64.7
Solyc07g065780.2 Solanum lycopersicum HOM05D000435 ORTHO05D000430 3.0e-16 88.2 70 64.3
Hund23056 Selenicereus undatus HOM05D000435 ORTHO05D000430 6.6e-16 87.0 75 60.0
TPR.G17959 Trifolium pratense HOM05D000435 ORTHO05D000430 1.1e-15 86.3 70 64.3
BcaB04g21003 Brassica carinata HOM05D000435 ORTHO05D000430 1.5e-15 85.9 74 62.2
PGR031G0181 Punica granatum HOM05D000435 ORTHO05D000430 1.5e-15 85.9 73 56.2
CDE02G3494 Ceratophyllum demersum HOM05D000435 ORTHO05D000430 2.5e-15 85.1 70 60.0
HPP92_026181 Vanilla planifolia HOM05D000435 ORTHO05D000430 2.5e-15 85.1 73 54.8
LjContig00081g0009877 Lotus japonicus HOM05D000435 ORTHO05D000430 4.3e-15 84.3 72 58.3
VMungo0540G1677 Vigna mungo HOM05D003572 ORTHO05D004118 4.3e-15 84.3 73 58.9
SalBow8G3343 Salvia bowleyana HOM05D000435 ORTHO05D000430 7.3e-15 83.6 68 60.3
SalBow8G4079 Salvia bowleyana HOM05D000435 ORTHO05D000430 7.3e-15 83.6 68 60.3
Rhsim04G0010800 Rhododendron simsii HOM05D000435 ORTHO05D000430 6.2e-14 80.5 57 68.4
ECA236G1471 Erigeron canadensis HOM05D000435 ORTHO05D000430 2.0e-12 75.5 53 66.0
SEGI_19381 Sequoiadendron giganteum HOM05D000435 ORTHO05D000430 2.0e-12 75.5 76 48.7
unitig_62.g23307 Utricularia gibba HOM05D000435 ORTHO05D000430 5.8e-12 73.9 70 55.7
Nitab4.5_0000152g0410 Nicotiana tabacum HOM05D000435 ORTHO05D000430 7.6e-12 73.6 53 66.0
PGSC0003DMG400022268 Solanum tuberosum HOM05D003572 ORTHO05D004118 7.6e-12 73.6 53 67.9
Zm00001eb386540 Zea mays HOM05D000435 ORTHO05D000430 7.6e-12 73.6 65 53.8
CAN.G623.32 Capsicum annuum HOM05D000435 ORTHO05D000430 2.2e-11 72.0 53 66.0
SMO118G0275 Selaginella moellendorffii HOM05D000435 ORTHO05D000430 2.9e-11 71.6 71 50.7
Sp1g41420 Schrenkiella parvula HOM05D000435 ORTHO05D371061 6.4e-11 70.5 67 53.7
SHI27706 Sapria himalayana HOM05D000435 ORTHO05D000430 3.2e-10 68.2 109 36.7
Pp3c11_25800 Physcomitrium patens HOM05D000435 ORTHO05D000430 7.8e-09 63.5 87 43.7
BcaC02g09266 Brassica carinata HOM05D002241 ORTHO05D000430 1.3e-08 62.8 80 45.0
C04p40670 Brassica napus HOM05D002241 ORTHO05D000430 1.3e-08 62.8 80 45.0
BolC4t25650H Brassica oleracea HOM05D000435 ORTHO05D000430 1.3e-08 62.8 80 45.0
A04p07090 Brassica napus HOM05D002241 ORTHO05D000430 3.0e-08 61.6 76 47.4
Os06g0607700 Oryza sativa ssp. japonica HOM05D000435 ORTHO05D000430 1.1e-07 59.7 66 48.5
BcaB02g08578 Brassica carinata HOM05D000435 ORTHO05D000430 1.5e-07 59.3 80 42.5
BraA04t16406Z Brassica rapa HOM05D002241 ORTHO05D000430 1.9e-07 58.9 90 41.1
CANSAT64G1430 Cannabis sativa HOM05D000435 ORTHO05D000430 1.9e-07 58.9 80 41.2
Sed0023924 Sechium edule HOM05D000435 ORTHO05D000430 1.9e-07 58.9 81 46.9
Sp5g09950 Schrenkiella parvula HOM05D000435 ORTHO05D000430 2.5e-07 58.5 81 44.4
MBI11_g26201_MAGBIO Magnolia biondii HOM05D000435 ORTHO05D000430 3.3e-07 58.2 80 42.5
AL5G32940 Arabidopsis lyrata HOM05D000435 ORTHO05D000430 4.3e-07 57.8 78 43.6
CARHR162080 Cardamine hirsuta HOM05D000435 ORTHO05D000430 4.3e-07 57.8 74 41.9
Ciclev10011143m.g Citrus clementina HOM05D000435 ORTHO05D000430 4.3e-07 57.8 80 41.2
PSO210G2592 Papaver somniferum HOM05D000435 ORTHO05D000430 4.3e-07 57.8 80 42.5
BcaC03g13164 Brassica carinata HOM05D000435 ORTHO05D000430 5.6e-07 57.4 80 42.5
C02p02740 Brassica napus HOM05D000435 ORTHO05D000430 5.6e-07 57.4 80 42.5
HPP92_002244 Vanilla planifolia HOM05D000435 ORTHO05D000430 5.6e-07 57.4 79 40.5
GSVIVG01022526001 Vitis vinifera HOM05D000435 ORTHO05D000430 5.6e-07 57.4 80 41.2
Nitab4.5_0000429g0030 Nicotiana tabacum HOM05D000435 ORTHO05D000430 1.6e-06 55.8 80 41.2
THA.LOC104823509 Tarenaya hassleriana HOM05D000435 ORTHO05D000430 1.6e-06 55.8 80 42.5
CAN.G388.50 Capsicum annuum HOM05D000435 ORTHO05D000430 2.1e-06 55.5 80 41.2
Cpa.g.sc222.15 Carica papaya HOM05D000435 ORTHO05D000430 2.1e-06 55.5 80 42.5
Nitab4.5_0002599g0030 Nicotiana tabacum HOM05D000435 ORTHO05D000430 2.1e-06 55.5 80 41.2
PSO339G0312 Papaver somniferum HOM05D000435 ORTHO05D000430 2.1e-06 55.5 81 45.7
SEGI_03685 Sequoiadendron giganteum HOM05D000435 ORTHO05D000430 2.1e-06 55.5 82 40.2
BolC2t06239H Brassica oleracea HOM05D000435 ORTHO05D000430 2.8e-06 55.1 81 42.0
DCAR_020679 Daucus carota HOM05D000435 ORTHO05D000430 2.8e-06 55.1 81 43.2
FAN09G4773 Fragaria x ananassa HOM05D000435 ORTHO05D000430 2.8e-06 55.1 80 41.2
Manes.09G041900 Manihot esculenta HOM05D000435 ORTHO05D000430 2.8e-06 55.1 80 41.2
Nn5g28666 Nelumbo nucifera HOM05D000435 ORTHO05D000430 2.8e-06 55.1 78 46.2
TAR633G1978 Trochodendron aralioides HOM05D000435 ORTHO05D000430 2.8e-06 55.1 80 41.2
Aa31LG10G7400 Aethionema arabicum HOM05D000435 ORTHO05D000430 3.6e-06 54.7 78 42.3
AagrBONN_evm.TU.Sc2ySwM_344.1314 Anthoceros agrestis HOM05D000435 ORTHO05D000430 3.6e-06 54.7 99 37.4
BcaB05g21665 Brassica carinata HOM05D000435 ORTHO05D000430 3.6e-06 54.7 80 42.5
Carub.0005s1867 Capsella rubella HOM05D000435 ORTHO05D000430 3.6e-06 54.7 80 41.2
Thhalv10010138m.g Eutrema salsugineum HOM05D000435 ORTHO05D000430 3.6e-06 54.7 83 39.8
FvH4_6g21010 Fragaria vesca HOM05D000435 ORTHO05D000430 3.6e-06 54.7 80 41.2
FAN02G3368 Fragaria x ananassa HOM05D000435 ORTHO05D000430 3.6e-06 54.7 80 41.2
FAN05G2031 Fragaria x ananassa HOM05D000435 ORTHO05D000430 3.6e-06 54.7 80 41.2
FAN05G4339 Fragaria x ananassa HOM05D000435 ORTHO05D000430 3.6e-06 54.7 80 41.2
FAN14G0489 Fragaria x ananassa HOM05D000435 ORTHO05D000430 3.6e-06 54.7 80 41.2
HanXRQChr01g0026181 Helianthus annuus HOM05D000435 ORTHO05D000430 3.6e-06 54.7 80 45.0
QL07p026386 Quercus lobata HOM05D000435 ORTHO05D000430 3.6e-06 54.7 78 42.3
RcHm_v2.0_Chr3g0477391 Rosa chinensis HOM05D000435 ORTHO05D000430 3.6e-06 54.7 80 41.2
AL6G16620 Arabidopsis lyrata HOM05D000435 ORTHO05D000430 4.7e-06 54.3 80 41.2
AT5G06530 Arabidopsis thaliana HOM05D000435 ORTHO05D000430 4.7e-06 54.3 80 41.2
Carub.0006s0541 Capsella rubella HOM05D000435 ORTHO05D000430 4.7e-06 54.3 80 41.2
DCAR_013460 Daucus carota HOM05D000435 ORTHO05D000430 4.7e-06 54.3 78 46.2
Eucgr.K01911 Eucalyptus grandis HOM05D000435 ORTHO05D000430 4.7e-06 54.3 80 38.8
Sed0005222 Sechium edule HOM05D000435 ORTHO05D000430 4.7e-06 54.3 80 41.2
THA.LOC104826788 Tarenaya hassleriana HOM05D000435 ORTHO05D000430 4.7e-06 54.3 80 41.2
Ah.12g059590 Amaranthus hybridus HOM05D000435 ORTHO05D000430 6.2e-06 53.9 80 38.8
MELO3C009572.2 Cucumis melo HOM05D000435 ORTHO05D000430 6.2e-06 53.9 80 40.0
CsaV3_3G038310 Cucumis sativus L. HOM05D000435 ORTHO05D000430 6.2e-06 53.9 80 40.0
Dinv25080 Davidia involucrata HOM05D000059 ORTHO05D000430 6.2e-06 53.9 80 40.0
ECA248G3236 Erigeron canadensis HOM05D000435 ORTHO05D000430 6.2e-06 53.9 38 68.4
Hund10796 Selenicereus undatus HOM05D000435 ORTHO05D000430 6.2e-06 53.9 81 40.7
Solyc01g006720.4 Solanum lycopersicum HOM05D000435 ORTHO05D000430 6.2e-06 53.9 80 38.8
Sopen01g002710 Solanum pennellii HOM05D000435 ORTHO05D000430 6.2e-06 53.9 80 38.8
Atru.chr8.1286 Acer truncatum HOM05D000435 ORTHO05D000430 8.1e-06 53.5 80 41.2
CARHR206670 Cardamine hirsuta HOM05D000435 ORTHO05D000430 8.1e-06 53.5 80 41.2
Potri.016G065900 Populus trichocarpa HOM05D000435 ORTHO05D000430 8.1e-06 53.5 80 41.2
vmacro07511 Vaccinium macrocarpon HOM05D000435 ORTHO05D000430 8.1e-06 53.5 80 40.0


User provided reference genes

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