Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr2.3555 Acer truncatum HOM05D004295 ORTHO05D004901 0.0e+00 1620.9 854 100.0
Atru.chr2.3536 Acer truncatum HOM05D004295 ORTHO05D004901 0.0e+00 1574.3 868 95.3
Ciclev10007504m.g Citrus clementina HOM05D004295 ORTHO05D004901 6.2e-272 941.0 878 62.0
Thecc.07G027600 Theobroma cacao HOM05D004295 ORTHO05D004901 2.4e-231 806.2 855 54.4
COL.COLO4_09741 Corchorus olitorius HOM05D004295 ORTHO05D004901 7.5e-217 758.1 853 52.8
Gohir.A08G024300 Gossypium hirsutum HOM05D004295 ORTHO05D004901 4.5e-214 748.8 818 52.7
Gorai.004G032700 Gossypium raimondii HOM05D004295 ORTHO05D004901 7.7e-214 748.0 860 51.3
Gohir.D08G034800 Gossypium hirsutum HOM05D004295 ORTHO05D004901 1.7e-213 746.9 860 51.2
Dinv40798 Davidia involucrata HOM05D004295 ORTHO05D004901 2.2e-208 729.9 861 50.8
Manes.15G066000 Manihot esculenta HOM05D004295 ORTHO05D004901 3.7e-208 729.2 869 50.4
TWI38G1745 Tripterygium wilfordii HOM05D004295 ORTHO05D004901 1.8e-207 726.9 838 52.7
QL08p007634 Quercus lobata HOM05D004295 ORTHO05D004901 1.5e-204 717.2 842 50.4
TWI39G0230 Tripterygium wilfordii HOM05D004295 ORTHO05D004901 1.0e-202 711.1 846 51.8
Dinv22227 Davidia involucrata HOM05D004295 ORTHO05D004901 3.1e-202 709.5 833 50.7
Cfa020273 Carpinus fangiana HOM05D004295 ORTHO05D004901 5.2e-202 708.8 805 51.9
Potri.001G358900 Populus trichocarpa HOM05D004295 ORTHO05D004901 6.8e-202 708.4 805 51.3
CANSAT11G1231 Cannabis sativa HOM05D004295 ORTHO05D004901 3.0e-197 693.0 870 48.6
Sabra16G0236700 Salix brachista HOM05D004295 ORTHO05D004901 1.1e-194 684.5 809 50.3
Haze_09750 Corylus avellana HOM05D004295 ORTHO05D004901 1.3e-192 677.6 829 49.9
Glyma.02G295400 Glycine max HOM05D004295 ORTHO05D004901 1.7e-192 677.2 814 49.9
Glyma.14G018000 Glycine max HOM05D004295 ORTHO05D004901 8.1e-187 658.3 811 48.2
CSS0006554 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 2.2e-184 650.2 871 47.4
Phvul.008G272900 Phaseolus vulgaris HOM05D004295 ORTHO05D004901 6.4e-184 648.7 806 48.1
arahy.Tifrunner.gnm1.ann1.9RR6WG Arachis hypogaea HOM05D004295 ORTHO05D004901 7.1e-183 645.2 806 47.4
arahy.Tifrunner.gnm1.ann1.WPCM0F Arachis hypogaea HOM05D004295 ORTHO05D004901 3.5e-182 642.9 812 47.4
CSS0022956 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 3.0e-181 639.8 814 48.3
Ca_06350_v3 Cicer arietinum L. HOM05D004295 ORTHO05D004901 3.6e-179 632.9 805 47.0
Psat2g010080 Pisum sativum HOM05D004295 ORTHO05D004901 3.6e-179 632.9 811 47.0
Hma1.2p1_0036F.1_g023080 Hydrangea macrophylla HOM05D004295 ORTHO05D004901 1.1e-178 631.3 857 47.3
Lalb_Chr10g0107181 Lupinus albus HOM05D004295 ORTHO05D004901 1.1e-178 631.3 820 47.1
TPR.G30656 Trifolium pratense HOM05D004295 ORTHO05D004901 2.0e-177 627.1 809 46.2
TAR629G3495 Trochodendron aralioides HOM05D004295 ORTHO05D004901 9.9e-177 624.8 861 46.0
Rhsim04G0016300 Rhododendron simsii HOM05D004295 ORTHO05D004901 8.4e-176 621.7 845 46.5
Medtr5g093940 Medicago truncatula HOM05D004295 ORTHO05D004901 5.4e-175 619.0 819 45.9
MD03G1193000 Malus domestica HOM05D004295 ORTHO05D004901 1.7e-173 614.0 1019 41.0
FvH4_3g23572 Fragaria vesca HOM05D004295 ORTHO05D004901 6.6e-173 612.1 927 43.4
vmacro09687 Vaccinium macrocarpon HOM05D004295 ORTHO05D004901 1.1e-172 611.3 854 45.2
MD11G1209200 Malus domestica HOM05D004295 ORTHO05D004901 1.9e-172 610.5 1012 41.3
TAR724G0001 Trochodendron aralioides HOM05D004295 ORTHO05D004901 3.6e-171 606.3 817 46.5
VMungo0647G0514 Vigna mungo HOM05D004295 ORTHO05D004901 1.2e-169 601.3 810 45.9
Nn7g37915 Nelumbo nucifera HOM05D004295 ORTHO05D004901 2.6e-169 600.1 876 45.2
FAN21G2245 Fragaria x ananassa HOM05D004295 ORTHO05D004901 7.4e-164 582.0 932 41.8
RcHm_v2.0_Chr5g0041571 Rosa chinensis HOM05D004295 ORTHO05D004901 9.6e-164 581.6 1058 39.0
Eucgr.F03507 Eucalyptus grandis HOM05D004295 ORTHO05D004901 1.3e-163 581.3 867 42.7
CSS0023200 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 2.4e-159 567.0 810 44.8
Lj8A173T74 Lonicera japonica HOM05D004295 ORTHO05D004901 7.9e-158 562.0 826 44.2
Cc05_g14350 Coffea canephora HOM05D004295 ORTHO05D004901 1.3e-157 561.2 837 44.2
MSTRG.6962 Avicennia marina HOM05D004295 ORTHO05D004901 8.7e-157 558.5 850 43.3
Aqoxy1G04109 Aquilegia oxysepala HOM05D004295 ORTHO05D004901 9.6e-156 555.1 861 42.4
Actinidia10753 Actinidia chinensis HOM05D004295 ORTHO05D004901 4.8e-155 552.7 799 45.2
Solyc12g014540.2 Solanum lycopersicum HOM05D004295 ORTHO05D004901 4.9e-152 542.7 850 40.9
FAN11G1876 Fragaria x ananassa HOM05D004295 ORTHO05D004901 1.9e-151 540.8 965 39.8
PGR031G2569 Punica granatum HOM05D004295 ORTHO05D004901 1.9e-151 540.8 907 40.9
Sopen12g007410 Solanum pennellii HOM05D004295 ORTHO05D004901 1.9e-151 540.8 850 41.1
Migut.M01703 Erythranthe guttata HOM05D004295 ORTHO05D004901 1.6e-150 537.7 841 42.1
CAN.G791.3 Capsicum annuum HOM05D004295 ORTHO05D004901 3.5e-150 536.6 811 42.7
Nn1g03330 Nelumbo nucifera HOM05D004295 ORTHO05D004901 3.5e-150 536.6 858 42.1
Nn1g07354 Nelumbo nucifera HOM05D003850 ORTHO05D004515 3.0e-149 533.5 817 44.1
MELO3C014171.2 Cucumis melo HOM05D004295 ORTHO05D004901 1.1e-146 525.0 800 42.2
Peaxi162Scf00339g01131 Petunia axillaris HOM05D004295 ORTHO05D004901 1.8e-146 524.2 859 40.7
ClCG10G005040 Citrullus lanatus HOM05D004295 ORTHO05D004901 4.1e-146 523.1 812 42.5
Lsat_1_v5_gn_5_2601 Lactuca sativa HOM05D004295 ORTHO05D004901 5.3e-146 522.7 802 43.0
Nitab4.5_0005221g0010 Nicotiana tabacum HOM05D004295 ORTHO05D004901 1.1e-143 515.0 827 41.6
LjContig00272g0028044 Lotus japonicus HOM05D004295 ORTHO05D004901 1.4e-143 514.6 788 40.9
Sed0002209 Sechium edule HOM05D004295 ORTHO05D004901 1.9e-143 514.2 794 41.9
DCAR_013201 Daucus carota HOM05D004295 ORTHO05D004901 2.5e-143 513.8 799 40.4
Solyc07g065000.3 Solanum lycopersicum HOM05D004295 ORTHO05D004901 2.3e-141 507.3 828 40.8
PSO302G0053 Papaver somniferum HOM05D004295 ORTHO05D004901 3.0e-141 506.9 863 41.4
Sc16g0005710 Simmondsia chinensis HOM05D004295 ORTHO05D004901 1.1e-140 505.0 848 40.3
Sopen07g033210 Solanum pennellii HOM05D004295 ORTHO05D004901 1.5e-140 504.6 824 40.3
PSO210G3166 Papaver somniferum HOM05D004295 ORTHO05D004901 5.7e-140 502.7 864 41.7
CiPaw.11G195000 Carya illinoinensis HOM05D004295 ORTHO05D004901 3.7e-139 500.0 571 50.6
HanXRQChr05g0159731 Helianthus annuus HOM05D004295 ORTHO05D004901 8.2e-139 498.8 818 40.7
Nitab4.5_0001160g0060 Nicotiana tabacum HOM05D004295 ORTHO05D004901 1.1e-138 498.4 884 39.6
PGSC0003DMG402022202 Solanum tuberosum HOM05D004295 ORTHO05D004901 1.4e-138 498.0 857 39.7
CAN.G337.52 Capsicum annuum HOM05D004295 ORTHO05D004901 7.7e-137 492.3 826 40.2
Oeu005986.1 Olea europaea HOM05D004295 ORTHO05D004901 4.2e-135 486.5 810 40.5
CsaV3_3G004720 Cucumis sativus L. HOM05D004295 ORTHO05D004901 4.6e-134 483.0 800 40.6
DCAR_022592 Daucus carota HOM05D004295 ORTHO05D004901 1.0e-133 481.9 926 36.3
AUR62020337 Chenopodium quinoa HOM05D004295 ORTHO05D004901 7.4e-132 475.7 851 39.0
Nitab4.5_0003989g0010 Nicotiana tabacum HOM05D004295 ORTHO05D004901 6.9e-130 469.2 804 39.2
SGA_v2.0_scaffold168G38508 Striga asiatica HOM05D004295 ORTHO05D004901 2.0e-129 467.6 876 38.2
Hund01951 Selenicereus undatus HOM05D004295 ORTHO05D004901 2.6e-129 467.2 831 39.2
AUR62015886 Chenopodium quinoa HOM05D004295 ORTHO05D004901 2.9e-128 463.8 849 38.5
Prupe.4G224000 Prunus persica HOM05D004295 ORTHO05D004901 5.0e-128 463.0 678 44.0
EL10Ac4g07685 Beta vulgaris HOM05D004295 ORTHO05D004901 4.7e-126 456.4 857 39.0
ECA246G1209 Erigeron canadensis HOM05D004295 ORTHO05D004901 2.6e-124 450.7 823 38.3
SHI26565 Sapria himalayana HOM05D004295 ORTHO05D004901 4.5e-121 439.9 753 38.9
MBI16_g42268_MAGBIO Magnolia biondii HOM05D004295 ORTHO05D004901 5.9e-121 439.5 880 37.6
Lj1A881T81 Lonicera japonica HOM05D004295 ORTHO05D004901 6.1e-118 429.5 747 40.4
FAN16G0173 Fragaria x ananassa HOM05D004295 ORTHO05D004901 2.0e-116 424.5 861 37.5
Peaxi162Scf00235g00827 Petunia axillaris HOM05D004295 ORTHO05D004901 1.0e-112 412.1 786 37.4
FAN25G1926 Fragaria x ananassa HOM05D004295 ORTHO05D004901 1.7e-112 411.4 647 43.0
Psat0s5g0080 Pisum sativum HOM05D004295 ORTHO05D004901 1.7e-112 411.4 635 42.0
Ah.06g182200 Amaranthus hybridus HOM05D004295 ORTHO05D004901 1.6e-110 404.8 826 36.3
Oeu007994.1 Olea europaea HOM05D004295 ORTHO05D004901 2.3e-109 401.0 750 39.3
Cpa.g.sc12.236 Carica papaya HOM05D004295 ORTHO05D004901 4.0e-109 400.2 483 48.0
HanXRQChr13g0408281 Helianthus annuus HOM05D004295 ORTHO05D004901 3.7e-107 393.7 777 36.4
ECA240G3846 Erigeron canadensis HOM05D004295 ORTHO05D004901 6.3e-107 392.9 784 36.1
Psat0s5g0040 Pisum sativum HOM05D004295 ORTHO05D004901 4.1e-98 363.6 669 38.4
TPR.G18377 Trifolium pratense HOM05D004295 ORTHO05D004901 1.8e-93 348.2 493 41.6
CiPaw.12G133900 Carya illinoinensis HOM05D004295 ORTHO05D004901 1.6e-89 335.1 568 40.0
Hma1.2p1_1332F.1_g276160 Hydrangea macrophylla HOM05D004295 ORTHO05D004901 3.9e-88 330.5 650 38.6
THA.LOC104810240 Tarenaya hassleriana HOM05D004295 ORTHO05D004901 7.3e-87 326.2 536 42.4
CDE06G2452 Ceratophyllum demersum HOM05D004295 ORTHO05D004901 2.1e-78 298.1 731 34.9
Aa31LG10G3720 Aethionema arabicum HOM05D005922 ORTHO05D006934 8.1e-78 296.2 617 36.3
Sp1g37440 Schrenkiella parvula HOM05D004295 ORTHO05D004901 1.3e-75 288.9 466 39.9
A05p20040 Brassica napus HOM05D004295 ORTHO05D004901 5.4e-74 283.5 468 39.5
BraA05t20910Z Brassica rapa HOM05D004295 ORTHO05D004901 5.4e-74 283.5 468 39.5
HPP92_015777 Vanilla planifolia HOM05D004295 ORTHO05D004901 5.4e-74 283.5 858 29.8
BcaB02g11165 Brassica carinata HOM05D004295 ORTHO05D004901 2.7e-73 281.2 464 40.5
CARHR040670 Cardamine hirsuta HOM05D004295 ORTHO05D004901 4.6e-73 280.4 471 39.7
Thhalv10011311m.g Eutrema salsugineum HOM05D004295 ORTHO05D004901 7.8e-73 279.6 546 37.9
Os06g0309000 Oryza sativa ssp. japonica HOM05D004295 ORTHO05D004901 7.8e-73 279.6 799 30.2
Carub.0001s3966 Capsella rubella HOM05D004295 ORTHO05D004901 2.3e-72 278.1 493 39.1
AL1G58280 Arabidopsis lyrata HOM05D004295 ORTHO05D004901 1.9e-71 275.0 465 39.1
Aa31LG8G7090 Aethionema arabicum HOM05D004295 ORTHO05D004901 1.2e-70 272.3 490 40.0
AT1G50620 Arabidopsis thaliana HOM05D004295 ORTHO05D004901 8.1e-70 269.6 462 38.7
BolC5t32077H Brassica oleracea HOM05D004295 ORTHO05D004901 4.0e-69 267.3 613 34.4
CDE04G3193 Ceratophyllum demersum HOM05D004295 ORTHO05D004901 6.8e-69 266.5 807 31.6
TAR626G0993 Trochodendron aralioides HOM05D004295 ORTHO05D004901 2.0e-68 265.0 435 40.7
BcaC05g27404 Brassica carinata HOM05D004295 ORTHO05D004901 7.6e-68 263.1 613 34.6
Nitab4.5_0002338g0050 Nicotiana tabacum HOM05D004295 ORTHO05D004901 9.9e-68 262.7 806 30.4
Sp3g18310 Schrenkiella parvula HOM05D004295 ORTHO05D004901 6.4e-67 260.0 561 36.0
C05p33520 Brassica napus HOM05D004295 ORTHO05D004901 1.4e-66 258.8 657 33.0
AT3G20280 Arabidopsis thaliana HOM05D004295 ORTHO05D004901 7.1e-66 256.5 464 36.9
BraA05t21740Z Brassica rapa HOM05D004295 ORTHO05D004901 3.0e-64 251.1 530 35.8
Carub.0003s2023 Capsella rubella HOM05D004295 ORTHO05D004901 3.9e-64 250.8 633 32.2
CARHR095900 Cardamine hirsuta HOM05D004295 ORTHO05D004901 1.3e-59 235.7 583 33.6
ATR0561G279 Amborella trichopoda HOM05D004295 ORTHO05D004901 2.2e-59 235.0 860 28.6
SEGI_01734 Sequoiadendron giganteum HOM05D004295 ORTHO05D004901 8.4e-59 233.0 862 29.4
C05p44040 Brassica napus HOM05D004295 ORTHO05D004901 2.4e-58 231.5 595 33.3
BolC5t33127H Brassica oleracea HOM05D004295 ORTHO05D004901 2.4e-58 231.5 595 33.3
A05p28640 Brassica napus HOM05D004295 ORTHO05D004901 4.2e-58 230.7 590 33.9
unitig_62.g23290 Utricularia gibba HOM05D004295 ORTHO05D004901 1.2e-57 229.2 742 30.2
AL3G34000 Arabidopsis lyrata HOM05D004295 ORTHO05D004901 1.1e-55 222.6 628 32.0
Actinidia37373 Actinidia chinensis HOM05D004295 ORTHO05D004901 1.8e-53 215.3 354 39.0
Cpa.g.sc12.238 Carica papaya HOM05D004295 ORTHO05D004901 1.5e-52 212.2 271 50.2
Actinidia37372 Actinidia chinensis HOM05D004295 ORTHO05D004901 2.0e-52 211.8 426 38.5
GSVIVG01037732001 Vitis vinifera HOM05D004295 ORTHO05D004901 8.4e-51 206.5 301 46.2
CARHR040590 Cardamine hirsuta HOM05D004295 ORTHO05D004901 7.1e-50 203.4 478 33.7
Mapoly0085s0079 Marchantia polymorpha HOM05D004295 ORTHO05D004901 4.6e-49 200.7 464 31.2
CiPaw.11G195100 Carya illinoinensis HOM05D004295 ORTHO05D004901 2.3e-48 198.4 194 57.2
Zm00001eb189420 Zea mays HOM05D004295 ORTHO05D004901 4.9e-43 180.6 625 31.2
Zm00001eb252930 Zea mays HOM05D004295 ORTHO05D004901 6.0e-41 173.7 632 30.1
SMO356G0590 Selaginella moellendorffii HOM05D004295 ORTHO05D004901 3.1e-37 161.4 460 27.6
Pp3c24_16720 Physcomitrium patens HOM05D004295 ORTHO05D004901 1.7e-35 155.6 778 23.7
GSVIVG01037731001 Vitis vinifera HOM05D004295 ORTHO05D004901 3.8e-35 154.5 101 63.4
Oeu007995.1 Olea europaea HOM05D004295 ORTHO05D004901 1.6e-30 139.0 103 59.2
PSO210G5678 Papaver somniferum HOM05D004295 ORTHO05D004901 1.3e-27 129.4 422 32.7
PSO302G0213 Papaver somniferum HOM05D004295 ORTHO05D004901 1.2e-25 122.9 435 31.7
TAR362G0197 Trochodendron aralioides HOM05D004295 ORTHO05D004901 3.3e-23 114.8 108 51.9
AagrBONN_evm.TU.Sc2ySwM_344.2809 Anthoceros agrestis HOM05D004295 ORTHO05D004901 1.8e-21 109.0 245 29.8
Atru.chr9.507 Acer truncatum HOM05D004295 ORTHO05D004901 4.1e-21 107.8 81 75.3
AagrBONN_evm.TU.Sc2ySwM_117.2763 Anthoceros agrestis HOM05D004295 ORTHO05D004901 5.0e-19 100.9 731 22.0
PGSC0003DMG400012847 Solanum tuberosum HOM05D004295 ORTHO05D004901 4.7e-17 94.4 97 52.6
Pp3c10_22120 Physcomitrium patens HOM05D004295 ORTHO05D004901 8.2e-14 83.6 78 46.2
SEGI_19418 Sequoiadendron giganteum HOM05D004295 ORTHO05D004901 3.8e-11 74.7 70 47.1
Pp3c20_14020 Physcomitrium patens HOM05D004295 ORTHO05D004901 1.6e-09 69.3 72 38.9
BcaB07g30968 Brassica carinata HOM05D004295 ORTHO05D004901 3.6e-09 68.2 81 46.9
Nn4g24851 Nelumbo nucifera HOM05D003564 ORTHO05D004901 3.3e-07 61.6 51 66.7
CBR_g29301 Chara braunii HOM05D000019 ORTHO05D000048 4.8e-06 57.8 97 32.0


User provided reference genes

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