Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr2.3553 Acer truncatum HOM05D005375 ORTHO05D006598 3.2e-200 701.8 424 100.0
Atru.chr2.3534 Acer truncatum HOM05D005375 ORTHO05D006598 1.1e-195 686.8 432 96.3
Ciclev10008309m.g Citrus clementina HOM05D005375 ORTHO05D006598 2.6e-146 522.7 452 67.0
Manes.03G136300 Manihot esculenta HOM05D005375 ORTHO05D006598 3.1e-139 499.2 436 67.9
Cfa020276 Carpinus fangiana HOM05D005375 ORTHO05D006598 7.7e-138 494.6 458 64.8
TWI38G0072 Tripterygium wilfordii HOM05D005375 ORTHO05D006598 3.6e-135 485.7 449 65.5
CSS0031566 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 1.7e-132 476.9 453 65.6
Thecc.07G027900 Theobroma cacao HOM05D005375 ORTHO05D006598 7.0e-131 471.5 435 65.7
MD03G1294800 Malus domestica HOM05D005375 ORTHO05D006598 8.5e-129 464.5 457 57.8
Rhsim06G0223700 Rhododendron simsii HOM05D005375 ORTHO05D006598 6.1e-127 458.4 439 60.6
CSS0021148 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 8.0e-127 458.0 446 59.4
QL08p007584 Quercus lobata HOM05D005375 ORTHO05D006598 2.3e-126 456.4 450 60.9
Nitab4.5_0004445g0070 Nicotiana tabacum HOM05D005375 ORTHO05D006598 4.4e-125 452.2 440 58.6
CsaV3_3G004730 Cucumis sativus L. HOM05D005375 ORTHO05D006598 2.2e-124 449.9 435 63.2
PGSC0003DMG400022298 Solanum tuberosum HOM05D005375 ORTHO05D006598 2.2e-124 449.9 430 62.1
Gohir.A04G011700 Gossypium hirsutum HOM05D005375 ORTHO05D006598 2.8e-124 449.5 461 58.1
Gorai.009G443800 Gossypium raimondii HOM05D005375 ORTHO05D006598 2.8e-124 449.5 461 57.9
Gohir.D05G374900 Gossypium hirsutum HOM05D005375 ORTHO05D006598 3.7e-124 449.1 461 57.9
Sabra11G0065600 Salix brachista HOM05D005375 ORTHO05D006598 8.2e-124 448.0 472 60.8
Dinv22229 Davidia involucrata HOM05D005375 ORTHO05D006598 1.1e-123 447.6 435 60.5
MD00G1179000 Malus domestica HOM05D005375 ORTHO05D006598 3.1e-123 446.0 454 57.3
Duzib170G0122 Durio zibethinus HOM05D005375 ORTHO05D006598 4.1e-123 445.7 432 62.7
Nitab4.5_0007749g0010 Nicotiana tabacum HOM05D005375 ORTHO05D006598 4.1e-123 445.7 446 62.6
Potri.011G082000 Populus trichocarpa HOM05D005375 ORTHO05D006598 9.1e-123 444.5 444 63.3
CAN.G337.55 Capsicum annuum HOM05D005375 ORTHO05D006598 3.5e-122 442.6 449 61.0
Phvul.008G272700 Phaseolus vulgaris HOM05D005375 ORTHO05D006598 3.5e-122 442.6 489 58.9
Prupe.8G266900 Prunus persica HOM05D005375 ORTHO05D006598 1.0e-121 441.0 442 61.3
Nitab4.5_0001160g0010 Nicotiana tabacum HOM05D005375 ORTHO05D006598 1.3e-121 440.7 444 59.5
Nitab4.5_0005078g0020 Nicotiana tabacum HOM05D005375 ORTHO05D006598 3.8e-121 439.1 434 60.6
Glyma.02G295200 Glycine max HOM05D005375 ORTHO05D006598 1.5e-120 437.2 482 60.0
ClCG10G005050 Citrullus lanatus HOM05D005375 ORTHO05D006598 3.2e-120 436.0 463 55.7
CSS0047507 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 1.2e-119 434.1 435 57.5
FvH4_5g39180 Fragaria vesca HOM05D005375 ORTHO05D006598 1.2e-119 434.1 480 56.0
FAN18G4382 Fragaria x ananassa HOM05D005375 ORTHO05D006598 3.6e-119 432.6 480 56.7
TAR629G0374 Trochodendron aralioides HOM05D005375 ORTHO05D006598 3.6e-119 432.6 436 58.5
MELO3C014172.2 Cucumis melo HOM05D005375 ORTHO05D006598 6.1e-119 431.8 435 66.7
SGA_v2.0_scaffold8G04388 Striga asiatica HOM05D005375 ORTHO05D006598 8.0e-119 431.4 455 54.9
vmacro22307 Vaccinium macrocarpon HOM05D005375 ORTHO05D006598 8.0e-119 431.4 492 53.0
FAN13G1970 Fragaria x ananassa HOM05D005375 ORTHO05D006598 4.0e-118 429.1 479 57.2
Glyma.14G018200 Glycine max HOM05D005375 ORTHO05D006598 5.2e-118 428.7 496 56.5
CiPaw.11G194800 Carya illinoinensis HOM05D005375 ORTHO05D006598 6.7e-118 428.3 441 61.9
TAR627G0180 Trochodendron aralioides HOM05D005375 ORTHO05D006598 1.5e-117 427.2 448 60.5
FAN04G2161 Fragaria x ananassa HOM05D005375 ORTHO05D006598 2.0e-117 426.8 479 54.7
LjContig00272g0009776 Lotus japonicus HOM05D005375 ORTHO05D006598 3.3e-117 426.0 484 57.6
RcHm_v2.0_Chr7g0241441 Rosa chinensis HOM05D005375 ORTHO05D006598 1.7e-116 423.7 479 54.7
FAN08G1518 Fragaria x ananassa HOM05D005375 ORTHO05D006598 3.7e-116 422.5 480 56.7
Cc05_g14340 Coffea canephora HOM05D005375 ORTHO05D006598 2.4e-115 419.9 453 58.3
Dinv40796 Davidia involucrata HOM05D005375 ORTHO05D006598 1.2e-114 417.5 468 54.9
VMungo0647G1984 Vigna mungo HOM05D005375 ORTHO05D006598 4.5e-114 415.6 504 53.2
AUR62020339 Chenopodium quinoa HOM05D005375 ORTHO05D006598 1.7e-113 413.7 469 55.0
ECA240G0086 Erigeron canadensis HOM05D005375 ORTHO05D006598 1.1e-112 411.0 442 59.5
MSTRG.6961 Avicennia marina HOM05D005375 ORTHO05D006598 1.9e-112 410.2 449 54.8
AUR62015884 Chenopodium quinoa HOM05D005375 ORTHO05D006598 2.5e-112 409.8 443 57.1
HanXRQChr13g0408271 Helianthus annuus HOM05D005375 ORTHO05D006598 4.2e-112 409.1 450 59.8
MSTRG.12999 Avicennia marina HOM05D005375 ORTHO05D006598 3.6e-111 406.0 448 54.7
BolC1t02212H Brassica oleracea HOM05D005375 ORTHO05D006598 3.6e-111 406.0 464 56.0
HanXRQChr03g0076881 Helianthus annuus HOM05D005375 ORTHO05D006598 6.1e-111 405.2 452 55.8
Migut.M01705 Erythranthe guttata HOM05D005375 ORTHO05D006598 8.0e-111 404.8 438 56.6
EL10Ac4g07689 Beta vulgaris HOM05D005375 ORTHO05D006598 2.3e-110 403.3 464 55.0
Lj6g0028194 Lotus japonicus HOM05D005375 ORTHO05D006598 5.2e-110 402.1 468 58.3
Duzib268G0742 Durio zibethinus HOM05D005375 ORTHO05D006598 8.8e-110 401.4 436 59.9
Psat2g009920 Pisum sativum HOM05D005375 ORTHO05D006598 8.8e-110 401.4 510 53.5
Solyc07g064980.3 Solanum lycopersicum HOM05D005375 ORTHO05D006598 2.0e-109 400.2 436 58.3
Aqoxy1G04123 Aquilegia oxysepala HOM05D005375 ORTHO05D006598 5.7e-109 398.7 445 56.6
TPR.G35360 Trifolium pratense HOM05D005375 ORTHO05D006598 7.5e-109 398.3 516 52.5
Sopen07g033190 Solanum pennellii HOM05D005375 ORTHO05D006598 9.8e-109 397.9 436 58.5
Sp7g24730 Schrenkiella parvula HOM05D005375 ORTHO05D006598 1.1e-107 394.4 448 52.9
Carub.0007s1409 Capsella rubella HOM05D005375 ORTHO05D006598 1.8e-107 393.7 452 53.3
AL7G26080 Arabidopsis lyrata HOM05D005375 ORTHO05D006598 9.1e-107 391.3 445 54.4
Eucgr.F03508 Eucalyptus grandis HOM05D005375 ORTHO05D006598 1.2e-106 391.0 479 52.4
CARHR234370 Cardamine hirsuta HOM05D005375 ORTHO05D006598 1.3e-105 387.5 464 51.5
AT4G26750 Arabidopsis thaliana HOM05D005375 ORTHO05D006598 2.9e-105 386.3 447 54.8
PSO302G0025 Papaver somniferum HOM05D005375 ORTHO05D006598 2.9e-105 386.3 456 55.7
Aa31LG5G12180 Aethionema arabicum HOM05D005375 ORTHO05D006598 3.8e-105 386.0 449 51.2
unitig_747.g21591 Utricularia gibba HOM05D005375 ORTHO05D006598 6.6e-105 385.2 441 54.6
Gorai.002G093900 Gossypium raimondii HOM05D005375 ORTHO05D006598 2.5e-104 383.3 435 57.7
Peaxi162Scf00235g00721 Petunia axillaris HOM05D005375 ORTHO05D006598 3.3e-104 382.9 452 54.9
PSO210G0227 Papaver somniferum HOM05D005375 ORTHO05D006598 9.5e-104 381.3 472 55.3
DCAR_022591 Daucus carota HOM05D005375 ORTHO05D006598 2.8e-103 379.8 442 53.8
Ca_06349_v3 Cicer arietinum L. HOM05D005375 ORTHO05D006598 8.0e-103 378.3 427 52.5
Gohir.D01G071200 Gossypium hirsutum HOM05D005375 ORTHO05D006598 1.0e-102 377.9 435 57.2
BraA01t01755Z Brassica rapa HOM05D000504 ORTHO05D000403 1.8e-102 377.1 445 57.8
Hma1.2p1_1332F.1_g276150 Hydrangea macrophylla HOM05D005375 ORTHO05D006598 6.8e-102 375.2 437 57.0
Migut.H01791 Erythranthe guttata HOM05D005375 ORTHO05D006598 3.4e-101 372.9 425 53.2
Gohir.A01G084800 Gossypium hirsutum HOM05D005375 ORTHO05D006598 4.4e-101 372.5 435 56.6
Thhalv10025139m.g Eutrema salsugineum HOM05D005375 ORTHO05D006598 1.7e-100 370.5 466 52.1
COL.COLO4_09738 Corchorus olitorius HOM05D005375 ORTHO05D006598 2.2e-100 370.2 448 52.9
Lsat_1_v5_gn_9_90720 Lactuca sativa HOM05D005375 ORTHO05D006598 2.2e-100 370.2 449 57.0
THA.LOC104811633 Tarenaya hassleriana HOM05D005375 ORTHO05D006598 3.1e-99 366.3 454 51.1
CANSAT11G2127 Cannabis sativa HOM05D005375 ORTHO05D006598 7.0e-99 365.2 454 54.2
Actinidia05060 Actinidia chinensis HOM05D005375 ORTHO05D006598 1.6e-98 364.0 348 62.4
A01p18000 Brassica napus HOM05D000504 ORTHO05D000403 7.8e-98 361.7 463 52.1
C01p22820 Brassica napus HOM05D000504 ORTHO05D006598 5.0e-97 359.0 463 51.8
Lj1C881T5 Lonicera japonica HOM05D005375 ORTHO05D006598 4.3e-96 355.9 405 55.8
Medtr5g093880 Medicago truncatula HOM05D005375 ORTHO05D006598 1.4e-94 350.9 498 49.4
Os06g0308800 Oryza sativa ssp. japonica HOM05D005375 ORTHO05D006598 3.1e-94 349.7 489 48.1
CDE07G0643 Ceratophyllum demersum HOM05D005375 ORTHO05D006598 2.0e-93 347.1 463 49.7
CDE04G3304 Ceratophyllum demersum HOM05D005375 ORTHO05D006598 4.4e-93 345.9 427 50.8
Lalb_Chr04g0248131 Lupinus albus HOM05D005375 ORTHO05D006598 5.8e-93 345.5 512 50.6
Sed0014032 Sechium edule HOM05D005375 ORTHO05D006598 1.3e-92 344.4 401 52.9
PGR031G3708 Punica granatum HOM05D005375 ORTHO05D006598 6.4e-92 342.0 431 49.7
ATR1101G026 Amborella trichopoda HOM05D005375 ORTHO05D006598 3.5e-90 336.3 444 49.1
SEGI_32868 Sequoiadendron giganteum HOM05D005375 ORTHO05D006598 1.2e-87 327.8 493 45.4
GSVIVG01037729001 Vitis vinifera HOM05D005375 ORTHO05D006598 4.4e-85 319.3 198 82.3
Oeu054311.1 Olea europaea HOM05D005375 ORTHO05D006598 1.3e-84 317.8 453 47.7
Lalb_Chr00c48g0412951 Lupinus albus HOM05D005375 ORTHO05D006598 3.9e-81 306.2 284 68.3
Nn1g07350 Nelumbo nucifera HOM05D005375 ORTHO05D006598 7.3e-80 302.0 474 45.6
Zm00001eb281230 Zea mays HOM05D005375 ORTHO05D006598 6.2e-79 298.9 445 45.6
Cpa.g.sc284.2 Carica papaya HOM05D005375 ORTHO05D006598 8.1e-79 298.5 169 88.2
Haze_09747 Corylus avellana HOM05D005375 ORTHO05D006598 7.5e-77 292.0 482 48.1
SMO271G0101 Selaginella moellendorffii HOM05D005375 ORTHO05D006598 1.1e-75 288.1 435 49.4
CSS0025851 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 2.4e-75 287.0 392 46.4
TAR624G1027 Trochodendron aralioides HOM05D005375 ORTHO05D006598 9.2e-75 285.0 192 77.6
Lj8A173T72 Lonicera japonica HOM05D005375 ORTHO05D006598 1.2e-74 284.6 416 46.2
HPP92_015778 Vanilla planifolia HOM05D005375 ORTHO05D006598 3.9e-73 279.6 341 53.1
Pp3c12_1420 Physcomitrium patens HOM05D005375 ORTHO05D006598 6.2e-71 272.3 464 41.2
Mapoly0043s0080 Marchantia polymorpha HOM05D005375 ORTHO05D006598 8.1e-71 271.9 497 39.8
DCAR_016648 Daucus carota HOM05D005375 ORTHO05D006598 1.4e-70 271.2 396 46.5
BcaC09g52262 Brassica carinata HOM05D005375 ORTHO05D006598 4.4e-69 266.2 396 48.5
PGR031G2801 Punica granatum HOM05D005375 ORTHO05D006598 8.4e-60 235.3 363 45.7
TWI39G0687 Tripterygium wilfordii HOM05D005375 ORTHO05D006598 1.3e-57 228.0 128 86.7
Sc16g0005720 Simmondsia chinensis HOM05D005375 ORTHO05D006598 5.1e-57 226.1 328 47.6
Actinidia32285 Actinidia chinensis HOM05D005375 ORTHO05D006598 1.1e-56 224.9 301 51.8
SHI26566 Sapria himalayana HOM05D005375 ORTHO05D006598 3.4e-53 213.4 482 36.3
Lalb_Chr00c48g0413001 Lupinus albus HOM05D005375 ORTHO05D006598 4.6e-50 203.0 168 66.7
AagrBONN_evm.TU.Sc2ySwM_368.1760 Anthoceros agrestis HOM05D005375 ORTHO05D006598 3.7e-47 193.4 379 36.9
Nn1g03334 Nelumbo nucifera HOM05D005375 ORTHO05D006598 8.7e-41 172.2 393 39.9
CBR_g50394 Chara braunii HOM05D005375 ORTHO05D006598 1.6e-39 167.9 422 34.6
Cre03.g145227 Chlamydomonas reinhardtii HOM05D005375 ORTHO05D006598 1.2e-37 161.8 173 50.3
PRCOL_00004002 Prasinoderma coloniale HOM05D005375 ORTHO05D006598 4.9e-36 156.4 157 52.2
MCO03G124 Micromonas commoda HOM05D005375 ORTHO05D006598 9.0e-30 135.6 147 46.9
Actinidia37374 Actinidia chinensis HOM05D005375 ORTHO05D006598 7.9e-26 122.5 321 34.0
Ah.06g182230 Amaranthus hybridus HOM05D005375 ORTHO05D006598 8.8e-25 119.0 65 89.2
Hund23196 Selenicereus undatus HOM05D005375 ORTHO05D006598 5.0e-20 103.2 97 58.8
Zm00001eb381490 Zea mays HOM05D005375 ORTHO05D006598 5.0e-20 103.2 164 42.7
TAR624G1433 Trochodendron aralioides HOM05D005375 ORTHO05D006598 3.2e-19 100.5 120 70.8
C08p09960 Brassica napus HOM05D000504 ORTHO05D000403 4.4e-16 90.1 62 74.2
BolC8t48673H Brassica oleracea HOM05D000504 ORTHO05D000403 4.4e-16 90.1 62 74.2
CAN.G4023.1 Capsicum annuum HOM05D005375 ORTHO05D006598 7.4e-16 89.4 110 49.1
CAN.G396.4 Capsicum annuum HOM05D005375 ORTHO05D006598 9.7e-16 89.0 134 44.0
MCO09G798 Micromonas commoda HOM05D005375 ORTHO05D006598 2.8e-15 87.4 196 36.2
Actinidia20957 Actinidia chinensis HOM05D005375 ORTHO05D006598 1.4e-14 85.1 51 80.4
PGR044G1312 Punica granatum HOM05D003929 ORTHO05D004499 1.5e-13 81.6 49 75.5
CAN.G396.14 Capsicum annuum HOM05D005375 ORTHO05D006598 7.7e-13 79.3 70 55.7
EL10Ac4g10331 Beta vulgaris HOM05D000230 ORTHO05D000176 6.3e-07 59.7 126 31.0
BcaC08g44958 Brassica carinata HOM05D000230 ORTHO05D000176 6.3e-07 59.7 139 26.6
C06p25880 Brassica napus HOM05D000230 ORTHO05D000176 6.3e-07 59.7 139 26.6
BolC6t37750H Brassica oleracea HOM05D000230 ORTHO05D000176 6.3e-07 59.7 139 26.6
AUR62000045 Chenopodium quinoa HOM05D000230 ORTHO05D000176 6.3e-07 59.7 126 31.0
AUR62019215 Chenopodium quinoa HOM05D000230 ORTHO05D000176 6.3e-07 59.7 126 31.0
Sp5g03890 Schrenkiella parvula HOM05D000230 ORTHO05D000176 6.3e-07 59.7 139 26.6
Aa31LG10G13570 Aethionema arabicum HOM05D000230 ORTHO05D000176 8.2e-07 59.3 139 26.6
AT3G59100 Arabidopsis thaliana HOM05D000230 ORTHO05D000176 8.2e-07 59.3 139 26.6
Carub.0005s2586 Capsella rubella HOM05D000230 ORTHO05D000176 8.2e-07 59.3 139 26.6
Thhalv10005734m.g Eutrema salsugineum HOM05D000230 ORTHO05D000176 1.1e-06 58.9 139 26.6
AL5G40990 Arabidopsis lyrata HOM05D000230 ORTHO05D000176 1.4e-06 58.5 139 26.6
BcaB02g06841 Brassica carinata HOM05D000230 ORTHO05D000176 1.4e-06 58.5 146 28.1
A07p24480 Brassica napus HOM05D000230 ORTHO05D000176 1.4e-06 58.5 139 26.6
BraA07t30092Z Brassica rapa HOM05D000230 ORTHO05D000176 1.4e-06 58.5 139 26.6
Rhsim01G0186600 Rhododendron simsii HOM05D000230 ORTHO05D000176 1.4e-06 58.5 140 30.7
BcaB02g07484 Brassica carinata HOM05D000230 ORTHO05D000176 1.8e-06 58.2 139 26.6
Thhalv10006528m.g Eutrema salsugineum HOM05D000230 ORTHO05D000176 2.4e-06 57.8 146 28.1
Lsat_1_v5_gn_8_116700 Lactuca sativa HOM05D000230 ORTHO05D000176 3.1e-06 57.4 115 31.3
Sc16g0011980 Simmondsia chinensis HOM05D000230 ORTHO05D000176 3.1e-06 57.4 126 30.2
CAN.G129.45 Capsicum annuum HOM05D000230 ORTHO05D000176 4.1e-06 57.0 127 30.7
Potri.001G230000 Populus trichocarpa HOM05D000230 ORTHO05D000176 4.1e-06 57.0 132 28.8
Solyc01g073750.4 Solanum lycopersicum HOM05D000230 ORTHO05D000176 4.1e-06 57.0 127 30.7
Sopen01g033360 Solanum pennellii HOM05D000230 ORTHO05D000176 4.1e-06 57.0 127 30.7
BcaC05g24364 Brassica carinata HOM05D000230 ORTHO05D000176 5.3e-06 56.6 146 29.5
C05p03930 Brassica napus HOM05D000230 ORTHO05D000176 5.3e-06 56.6 146 29.5
BolC5t29170H Brassica oleracea HOM05D000230 ORTHO05D000176 5.3e-06 56.6 146 29.5
Sp1g04410 Schrenkiella parvula HOM05D000230 ORTHO05D000176 5.3e-06 56.6 146 27.4
Hund21655 Selenicereus undatus HOM05D000230 ORTHO05D000176 5.3e-06 56.6 126 29.4
THA.LOC104803323 Tarenaya hassleriana HOM05D000230 ORTHO05D000176 5.3e-06 56.6 139 25.9
BcaC07g38248 Brassica carinata HOM05D005375 ORTHO05D006598 7.0e-06 56.2 94 37.2
CiPaw.13G170400 Carya illinoinensis HOM05D000230 ORTHO05D000176 7.0e-06 56.2 128 28.1
FAN21G1634 Fragaria x ananassa HOM05D000230 ORTHO05D000176 7.0e-06 56.2 126 29.4
QL04p000645 Quercus lobata HOM05D000230 ORTHO05D000176 7.0e-06 56.2 127 29.9
A10p04280 Brassica napus HOM05D000230 ORTHO05D000176 9.1e-06 55.8 146 28.8
BraA10t42696Z Brassica rapa HOM05D000230 ORTHO05D000176 9.1e-06 55.8 146 28.8
ECA238G0891 Erigeron canadensis HOM05D000230 ORTHO05D000176 9.1e-06 55.8 139 24.5


User provided reference genes

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