Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr2.3536 Acer truncatum HOM05D004295 ORTHO05D004901 0.0e+00 1664.8 868 100.0
Atru.chr2.3555 Acer truncatum HOM05D004295 ORTHO05D004901 0.0e+00 1572.0 868 95.3
Ciclev10007504m.g Citrus clementina HOM05D004295 ORTHO05D004901 1.4e-271 939.9 892 61.1
Thecc.07G027600 Theobroma cacao HOM05D004295 ORTHO05D004901 9.3e-231 804.3 868 54.1
COL.COLO4_09741 Corchorus olitorius HOM05D004295 ORTHO05D004901 2.9e-216 756.1 866 52.5
Gohir.A08G024300 Gossypium hirsutum HOM05D004295 ORTHO05D004901 1.3e-213 747.3 833 52.2
Gorai.004G032700 Gossypium raimondii HOM05D004295 ORTHO05D004901 2.3e-213 746.5 875 50.9
Gohir.D08G034800 Gossypium hirsutum HOM05D004295 ORTHO05D004901 5.1e-213 745.3 875 50.7
TWI38G1745 Tripterygium wilfordii HOM05D004295 ORTHO05D004901 2.5e-207 726.5 851 52.4
Dinv40798 Davidia involucrata HOM05D004295 ORTHO05D004901 2.1e-206 723.4 874 50.1
QL08p007634 Quercus lobata HOM05D004295 ORTHO05D004901 1.8e-205 720.3 855 50.4
Manes.15G066000 Manihot esculenta HOM05D004295 ORTHO05D004901 2.3e-205 719.9 882 49.9
TWI39G0230 Tripterygium wilfordii HOM05D004295 ORTHO05D004901 1.1e-202 711.1 859 51.5
Cfa020273 Carpinus fangiana HOM05D004295 ORTHO05D004901 9.0e-202 708.0 818 51.6
Dinv22227 Davidia involucrata HOM05D004295 ORTHO05D004901 2.2e-200 703.4 846 50.0
Potri.001G358900 Populus trichocarpa HOM05D004295 ORTHO05D004901 2.3e-197 693.3 818 50.2
CANSAT11G1231 Cannabis sativa HOM05D004295 ORTHO05D004901 4.1e-194 682.6 883 47.9
Haze_09750 Corylus avellana HOM05D004295 ORTHO05D004901 1.2e-193 681.0 842 49.6
Sabra16G0236700 Salix brachista HOM05D004295 ORTHO05D004901 8.5e-192 674.9 822 49.5
Glyma.02G295400 Glycine max HOM05D004295 ORTHO05D004901 3.2e-191 672.9 827 49.5
Glyma.14G018000 Glycine max HOM05D004295 ORTHO05D004901 9.1e-186 654.8 824 47.9
arahy.Tifrunner.gnm1.ann1.9RR6WG Arachis hypogaea HOM05D004295 ORTHO05D004901 5.5e-183 645.6 819 47.3
arahy.Tifrunner.gnm1.ann1.WPCM0F Arachis hypogaea HOM05D004295 ORTHO05D004901 2.7e-182 643.3 825 47.3
CSS0006554 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 7.9e-182 641.7 884 46.9
Phvul.008G272900 Phaseolus vulgaris HOM05D004295 ORTHO05D004901 3.9e-181 639.4 819 47.6
Ca_06350_v3 Cicer arietinum L. HOM05D004295 ORTHO05D004901 8.2e-179 631.7 818 46.5
CSS0022956 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 3.1e-178 629.8 827 47.6
Lalb_Chr10g0107181 Lupinus albus HOM05D004295 ORTHO05D004901 3.1e-178 629.8 833 46.7
Psat2g010080 Pisum sativum HOM05D004295 ORTHO05D004901 1.0e-176 624.8 824 46.6
TPR.G30656 Trifolium pratense HOM05D004295 ORTHO05D004901 2.5e-175 620.2 822 46.0
Medtr5g093940 Medicago truncatula HOM05D004295 ORTHO05D004901 7.2e-175 618.6 832 45.8
Hma1.2p1_0036F.1_g023080 Hydrangea macrophylla HOM05D004295 ORTHO05D004901 2.7e-174 616.7 870 46.2
MD03G1193000 Malus domestica HOM05D004295 ORTHO05D004901 8.0e-174 615.1 1032 40.8
Rhsim04G0016300 Rhododendron simsii HOM05D004295 ORTHO05D004901 8.0e-174 615.1 858 46.0
TAR629G3495 Trochodendron aralioides HOM05D004295 ORTHO05D004901 2.3e-173 613.6 874 45.2
MD11G1209200 Malus domestica HOM05D004295 ORTHO05D004901 5.7e-172 609.0 1025 41.1
vmacro09687 Vaccinium macrocarpon HOM05D004295 ORTHO05D004901 2.2e-171 607.1 867 44.9
FvH4_3g23572 Fragaria vesca HOM05D004295 ORTHO05D004901 1.2e-169 601.3 940 42.8
TAR724G0001 Trochodendron aralioides HOM05D004295 ORTHO05D004901 1.6e-169 600.9 830 45.9
VMungo0647G0514 Vigna mungo HOM05D004295 ORTHO05D004901 1.6e-169 600.9 823 45.7
FAN21G2245 Fragaria x ananassa HOM05D004295 ORTHO05D004901 2.0e-164 583.9 941 41.8
Nn7g37915 Nelumbo nucifera HOM05D004295 ORTHO05D004901 2.2e-163 580.5 890 43.8
Eucgr.F03507 Eucalyptus grandis HOM05D004295 ORTHO05D004901 2.8e-163 580.1 880 42.5
RcHm_v2.0_Chr5g0041571 Rosa chinensis HOM05D004295 ORTHO05D004901 5.9e-161 572.4 1071 38.7
Cc05_g14350 Coffea canephora HOM05D004295 ORTHO05D004901 1.0e-157 561.6 850 44.1
MSTRG.6962 Avicennia marina HOM05D004295 ORTHO05D004901 2.3e-157 560.5 863 43.6
CSS0023200 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 2.3e-157 560.5 822 43.9
Lj8A173T74 Lonicera japonica HOM05D004295 ORTHO05D004901 1.5e-156 557.8 839 43.7
PGR031G2569 Punica granatum HOM05D004295 ORTHO05D004901 2.3e-152 543.9 919 41.0
Actinidia10753 Actinidia chinensis HOM05D004295 ORTHO05D004901 2.9e-152 543.5 812 44.5
Aqoxy1G04109 Aquilegia oxysepala HOM05D004295 ORTHO05D004901 5.0e-152 542.7 874 41.4
Migut.M01703 Erythranthe guttata HOM05D004295 ORTHO05D004901 2.8e-150 537.0 854 42.0
FAN11G1876 Fragaria x ananassa HOM05D004295 ORTHO05D004901 1.8e-149 534.3 978 39.3
Solyc12g014540.2 Solanum lycopersicum HOM05D004295 ORTHO05D004901 2.3e-149 533.9 863 40.4
MELO3C014171.2 Cucumis melo HOM05D004295 ORTHO05D004901 5.2e-149 532.7 813 41.7
Sopen12g007410 Solanum pennellii HOM05D004295 ORTHO05D004901 8.9e-149 531.9 863 40.6
Nn1g03330 Nelumbo nucifera HOM05D004295 ORTHO05D004901 2.6e-148 530.4 871 41.4
ClCG10G005040 Citrullus lanatus HOM05D004295 ORTHO05D004901 1.3e-147 528.1 907 39.6
CAN.G791.3 Capsicum annuum HOM05D004295 ORTHO05D004901 1.1e-146 525.0 824 41.7
Sed0002209 Sechium edule HOM05D004295 ORTHO05D004901 2.3e-144 517.3 807 41.5
Lsat_1_v5_gn_5_2601 Lactuca sativa HOM05D004295 ORTHO05D004901 8.6e-144 515.4 815 42.5
LjContig00272g0028044 Lotus japonicus HOM05D004295 ORTHO05D004901 8.6e-144 515.4 801 40.9
Peaxi162Scf00339g01131 Petunia axillaris HOM05D004295 ORTHO05D004901 3.3e-143 513.5 872 40.1
Nitab4.5_0005221g0010 Nicotiana tabacum HOM05D004295 ORTHO05D004901 9.5e-143 511.9 840 41.3
Nn1g07354 Nelumbo nucifera HOM05D003850 ORTHO05D004515 2.8e-142 510.4 830 42.4
Solyc07g065000.3 Solanum lycopersicum HOM05D004295 ORTHO05D004901 5.2e-141 506.1 841 40.7
DCAR_013201 Daucus carota HOM05D004295 ORTHO05D004901 2.6e-140 503.8 813 40.2
Sopen07g033210 Solanum pennellii HOM05D004295 ORTHO05D004901 4.4e-140 503.1 837 40.1
Sc16g0005710 Simmondsia chinensis HOM05D004295 ORTHO05D004901 4.9e-139 499.6 861 40.1
PGSC0003DMG402022202 Solanum tuberosum HOM05D004295 ORTHO05D004901 6.4e-139 499.2 871 39.7
Nitab4.5_0001160g0060 Nicotiana tabacum HOM05D004295 ORTHO05D004901 5.4e-138 496.1 897 39.6
PSO302G0053 Papaver somniferum HOM05D004295 ORTHO05D004901 9.2e-138 495.4 875 40.6
PSO210G3166 Papaver somniferum HOM05D004295 ORTHO05D004901 7.8e-137 492.3 876 40.9
CAN.G337.52 Capsicum annuum HOM05D004295 ORTHO05D004901 3.9e-136 490.0 839 40.0
CiPaw.11G195000 Carya illinoinensis HOM05D004295 ORTHO05D004901 3.9e-136 490.0 584 49.7
CsaV3_3G004720 Cucumis sativus L. HOM05D004295 ORTHO05D004901 4.3e-135 486.5 813 39.9
HanXRQChr05g0159731 Helianthus annuus HOM05D004295 ORTHO05D004901 4.3e-135 486.5 831 40.2
Oeu005986.1 Olea europaea HOM05D004295 ORTHO05D004901 9.5e-135 485.3 823 40.3
DCAR_022592 Daucus carota HOM05D004295 ORTHO05D004901 1.4e-130 471.5 941 35.9
AUR62020337 Chenopodium quinoa HOM05D004295 ORTHO05D004901 2.4e-130 470.7 859 38.4
Prupe.4G224000 Prunus persica HOM05D004295 ORTHO05D004901 1.6e-129 468.0 685 43.9
SGA_v2.0_scaffold168G38508 Striga asiatica HOM05D004295 ORTHO05D004901 4.6e-129 466.5 890 38.1
Hund01951 Selenicereus undatus HOM05D004295 ORTHO05D004901 6.6e-128 462.6 844 38.6
Nitab4.5_0003989g0010 Nicotiana tabacum HOM05D004295 ORTHO05D004901 3.3e-127 460.3 817 38.7
AUR62015886 Chenopodium quinoa HOM05D004295 ORTHO05D004901 6.2e-126 456.1 857 37.6
SHI26565 Sapria himalayana HOM05D004295 ORTHO05D004901 2.2e-123 447.6 770 39.1
EL10Ac4g07685 Beta vulgaris HOM05D004295 ORTHO05D004901 3.8e-123 446.8 870 38.4
ECA246G1209 Erigeron canadensis HOM05D004295 ORTHO05D004901 1.9e-122 444.5 835 37.7
Lj1A881T81 Lonicera japonica HOM05D004295 ORTHO05D004901 2.5e-119 434.1 745 40.5
MBI16_g42268_MAGBIO Magnolia biondii HOM05D004295 ORTHO05D004901 7.3e-119 432.6 893 37.2
Peaxi162Scf00235g00827 Petunia axillaris HOM05D004295 ORTHO05D004901 1.1e-117 428.7 786 38.2
FAN16G0173 Fragaria x ananassa HOM05D004295 ORTHO05D004901 4.4e-116 423.3 861 37.6
Cpa.g.sc12.236 Carica papaya HOM05D004295 ORTHO05D004901 1.3e-112 411.8 483 48.9
FAN25G1926 Fragaria x ananassa HOM05D004295 ORTHO05D004901 3.9e-112 410.2 647 43.1
Psat0s5g0080 Pisum sativum HOM05D004295 ORTHO05D004901 9.6e-111 405.6 648 42.0
Oeu007994.1 Olea europaea HOM05D004295 ORTHO05D004901 5.3e-109 399.8 737 39.8
Ah.06g182200 Amaranthus hybridus HOM05D004295 ORTHO05D004901 9.9e-108 395.6 828 35.4
ECA240G3846 Erigeron canadensis HOM05D004295 ORTHO05D004901 4.6e-105 386.7 799 35.7
HanXRQChr13g0408281 Helianthus annuus HOM05D004295 ORTHO05D004901 1.5e-103 381.7 790 35.3
Psat0s5g0040 Pisum sativum HOM05D004295 ORTHO05D004901 5.5e-98 363.2 673 38.9
TPR.G18377 Trifolium pratense HOM05D004295 ORTHO05D004901 1.1e-93 349.0 516 41.5
CiPaw.12G133900 Carya illinoinensis HOM05D004295 ORTHO05D004901 7.6e-92 342.8 570 40.4
Hma1.2p1_1332F.1_g276160 Hydrangea macrophylla HOM05D004295 ORTHO05D004901 1.9e-87 328.2 650 38.5
THA.LOC104810240 Tarenaya hassleriana HOM05D004295 ORTHO05D004901 4.3e-87 327.0 536 42.0
CDE06G2452 Ceratophyllum demersum HOM05D004295 ORTHO05D004901 4.3e-79 300.4 734 35.8
Aa31LG10G3720 Aethionema arabicum HOM05D005922 ORTHO05D006934 2.9e-75 287.7 617 36.0
A05p20040 Brassica napus HOM05D004295 ORTHO05D004901 4.2e-74 283.9 468 39.7
BraA05t20910Z Brassica rapa HOM05D004295 ORTHO05D004901 4.2e-74 283.9 468 39.7
Sp1g37440 Schrenkiella parvula HOM05D004295 ORTHO05D004901 1.2e-73 282.3 466 39.3
CARHR040670 Cardamine hirsuta HOM05D004295 ORTHO05D004901 7.9e-73 279.6 469 39.9
Thhalv10011311m.g Eutrema salsugineum HOM05D004295 ORTHO05D004901 1.0e-72 279.3 546 37.7
BcaB02g11165 Brassica carinata HOM05D004295 ORTHO05D004901 5.1e-72 276.9 464 39.2
HPP92_015777 Vanilla planifolia HOM05D004295 ORTHO05D004901 2.0e-71 275.0 869 28.7
Os06g0309000 Oryza sativa ssp. japonica HOM05D004295 ORTHO05D004901 3.3e-71 274.2 812 29.9
Carub.0001s3966 Capsella rubella HOM05D004295 ORTHO05D004901 7.4e-71 273.1 492 38.8
Aa31LG8G7090 Aethionema arabicum HOM05D004295 ORTHO05D004901 3.7e-70 270.8 490 39.6
AL1G58280 Arabidopsis lyrata HOM05D004295 ORTHO05D004901 6.3e-70 270.0 467 38.8
BolC5t32077H Brassica oleracea HOM05D004295 ORTHO05D004901 1.5e-68 265.4 613 34.6
AT1G50620 Arabidopsis thaliana HOM05D004295 ORTHO05D004901 4.5e-68 263.8 467 37.9
BcaC05g27404 Brassica carinata HOM05D004295 ORTHO05D004901 2.9e-67 261.2 613 34.6
Sp3g18310 Schrenkiella parvula HOM05D004295 ORTHO05D004901 6.5e-67 260.0 561 36.0
TAR626G0993 Trochodendron aralioides HOM05D004295 ORTHO05D004901 4.2e-66 257.3 448 39.5
C05p33520 Brassica napus HOM05D004295 ORTHO05D004901 5.5e-66 256.9 657 33.2
Nitab4.5_0002338g0050 Nicotiana tabacum HOM05D004295 ORTHO05D004901 2.1e-65 255.0 819 30.2
AT3G20280 Arabidopsis thaliana HOM05D004295 ORTHO05D004901 6.1e-65 253.4 464 36.2
CDE04G3193 Ceratophyllum demersum HOM05D004295 ORTHO05D004901 1.0e-64 252.7 822 31.3
Carub.0003s2023 Capsella rubella HOM05D004295 ORTHO05D004901 1.1e-63 249.2 633 32.4
BraA05t21740Z Brassica rapa HOM05D004295 ORTHO05D004901 2.6e-63 248.1 530 35.1
CARHR095900 Cardamine hirsuta HOM05D004295 ORTHO05D004901 2.9e-59 234.6 586 34.3
ATR0561G279 Amborella trichopoda HOM05D004295 ORTHO05D004901 2.5e-58 231.5 871 28.6
A05p28640 Brassica napus HOM05D004295 ORTHO05D004901 4.7e-57 227.3 592 32.8
unitig_62.g23290 Utricularia gibba HOM05D004295 ORTHO05D004901 8.0e-57 226.5 748 29.7
SEGI_01734 Sequoiadendron giganteum HOM05D004295 ORTHO05D004901 1.8e-56 225.3 871 28.5
C05p44040 Brassica napus HOM05D004295 ORTHO05D004901 2.3e-56 224.9 595 31.9
BolC5t33127H Brassica oleracea HOM05D004295 ORTHO05D004901 2.3e-56 224.9 595 31.9
Actinidia37372 Actinidia chinensis HOM05D004295 ORTHO05D004901 8.3e-54 216.5 426 39.2
AL3G34000 Arabidopsis lyrata HOM05D004295 ORTHO05D004901 1.4e-53 215.7 628 31.4
Cpa.g.sc12.238 Carica papaya HOM05D004295 ORTHO05D004901 3.5e-52 211.1 288 47.9
Actinidia37373 Actinidia chinensis HOM05D004295 ORTHO05D004901 7.7e-52 209.9 367 38.1
GSVIVG01037732001 Vitis vinifera HOM05D004295 ORTHO05D004901 8.5e-51 206.5 303 45.5
CARHR040590 Cardamine hirsuta HOM05D004295 ORTHO05D004901 3.0e-48 198.0 483 31.7
CiPaw.11G195100 Carya illinoinensis HOM05D004295 ORTHO05D004901 6.8e-48 196.8 194 56.7
Mapoly0085s0079 Marchantia polymorpha HOM05D004295 ORTHO05D004901 2.6e-47 194.9 475 30.3
Zm00001eb189420 Zea mays HOM05D004295 ORTHO05D004901 1.1e-42 179.5 620 31.1
Zm00001eb252930 Zea mays HOM05D004295 ORTHO05D004901 1.2e-41 176.0 628 30.4
GSVIVG01037731001 Vitis vinifera HOM05D004295 ORTHO05D004901 2.0e-36 158.7 101 65.3
SMO356G0590 Selaginella moellendorffii HOM05D004295 ORTHO05D004901 1.9e-34 152.1 471 26.3
Pp3c24_16720 Physcomitrium patens HOM05D004295 ORTHO05D004901 7.3e-34 150.2 800 24.0
Oeu007995.1 Olea europaea HOM05D004295 ORTHO05D004901 2.6e-31 141.7 103 60.2
PSO210G5678 Papaver somniferum HOM05D004295 ORTHO05D004901 1.6e-28 132.5 421 33.0
PSO302G0213 Papaver somniferum HOM05D004295 ORTHO05D004901 8.0e-25 120.2 435 31.3
TAR362G0197 Trochodendron aralioides HOM05D004295 ORTHO05D004901 2.0e-23 115.5 108 51.9
Atru.chr9.507 Acer truncatum HOM05D004295 ORTHO05D004901 4.1e-21 107.8 81 75.3
AagrBONN_evm.TU.Sc2ySwM_344.2809 Anthoceros agrestis HOM05D004295 ORTHO05D004901 8.6e-19 100.1 256 27.3
AagrBONN_evm.TU.Sc2ySwM_117.2763 Anthoceros agrestis HOM05D004295 ORTHO05D004901 1.6e-17 95.9 739 21.7
PGSC0003DMG400012847 Solanum tuberosum HOM05D004295 ORTHO05D004901 3.6e-17 94.7 97 52.6
Pp3c10_22120 Physcomitrium patens HOM05D004295 ORTHO05D004901 8.3e-14 83.6 78 46.2
SEGI_19418 Sequoiadendron giganteum HOM05D004295 ORTHO05D004901 1.1e-10 73.2 70 45.7
Pp3c20_14020 Physcomitrium patens HOM05D004295 ORTHO05D004901 1.6e-09 69.3 72 38.9
BcaB07g30968 Brassica carinata HOM05D004295 ORTHO05D004901 2.8e-09 68.6 81 46.9
Nn4g24851 Nelumbo nucifera HOM05D003564 ORTHO05D004901 3.4e-07 61.6 51 66.7
CBR_g29301 Chara braunii HOM05D000019 ORTHO05D000048 4.9e-06 57.8 97 32.0


User provided reference genes

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