Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr2.3247 Acer truncatum HOM05D006362 ORTHO05D008295 0.0e+00 1109.0 568 100.0
Ciclev10007871m.g Citrus clementina HOM05D006362 ORTHO05D008295 1.2e-279 966.1 569 86.5
Thecc.07G046200 Theobroma cacao HOM05D006362 ORTHO05D008295 1.5e-269 932.6 571 82.1
Potri.011G135800 Populus trichocarpa HOM05D006362 ORTHO05D008295 4.3e-269 931.0 567 82.7
Gorai.002G084800 Gossypium raimondii HOM05D006362 ORTHO05D008295 1.2e-268 929.5 569 81.4
GSVIVG01001989001 Vitis vinifera HOM05D006362 ORTHO05D008295 6.2e-268 927.2 568 82.2
Gohir.A01G076501 Gossypium hirsutum HOM05D006362 ORTHO05D008295 2.4e-267 925.2 569 81.0
QL08p012554 Quercus lobata HOM05D006362 ORTHO05D008295 5.2e-267 924.1 566 81.8
Dinv40729 Davidia involucrata HOM05D006362 ORTHO05D008295 9.0e-267 923.3 567 81.8
TWI38G1299 Tripterygium wilfordii HOM05D006362 ORTHO05D008295 9.0e-267 923.3 565 83.0
Manes.15G074800 Manihot esculenta HOM05D006362 ORTHO05D008295 2.6e-266 921.8 569 81.7
Gohir.D01G064000 Gossypium hirsutum HOM05D006362 ORTHO05D008295 3.5e-263 911.4 569 80.3
MD03G1209000 Malus domestica HOM05D006362 ORTHO05D008295 6.0e-263 910.6 561 81.3
Hma1.2p1_1344F.1_g277040 Hydrangea macrophylla HOM05D006362 ORTHO05D008295 7.8e-263 910.2 558 82.1
TAR626G1624 Trochodendron aralioides HOM05D006362 ORTHO05D008295 2.5e-261 905.2 566 81.1
CANSAT11G0353 Cannabis sativa HOM05D006362 ORTHO05D008295 3.3e-261 904.8 568 80.3
Cfa020397 Carpinus fangiana HOM05D006362 ORTHO05D008295 4.3e-261 904.4 636 73.9
Prupe.4G206200 Prunus persica HOM05D006362 ORTHO05D008295 6.9e-259 897.1 569 80.7
Duzib268G0905 Durio zibethinus HOM05D006362 ORTHO05D008295 1.5e-258 896.0 571 79.5
Sed0025840 Sechium edule HOM05D006362 ORTHO05D008295 2.4e-256 888.6 569 76.4
Glyma.06G271800 Glycine max HOM05D006362 ORTHO05D008295 3.2e-256 888.3 565 79.1
Eucgr.F03442 Eucalyptus grandis HOM05D006362 ORTHO05D008295 4.2e-256 887.9 569 78.4
CsaV3_1G044730 Cucumis sativus L. HOM05D006362 ORTHO05D008295 5.4e-256 887.5 569 77.2
RcHm_v2.0_Chr4g0399351 Rosa chinensis HOM05D006362 ORTHO05D008295 5.4e-256 887.5 565 80.2
MELO3C018085.2 Cucumis melo HOM05D006362 ORTHO05D008295 7.1e-256 887.1 569 76.8
FAN12G0341 Fragaria x ananassa HOM05D006362 ORTHO05D008295 7.1e-256 887.1 565 80.5
TPR.G25875 Trifolium pratense HOM05D006362 ORTHO05D008295 1.2e-255 886.3 569 77.7
FvH4_4g07170 Fragaria vesca HOM05D006362 ORTHO05D008295 1.6e-255 885.9 565 80.4
Nitab4.5_0002342g0020 Nicotiana tabacum HOM05D006362 ORTHO05D008295 1.0e-254 883.2 571 78.1
Lj3g0015245 Lotus japonicus HOM05D006362 ORTHO05D008295 2.3e-254 882.1 563 78.5
Lalb_Chr03g0030071 Lupinus albus HOM05D006362 ORTHO05D008295 3.3e-253 878.2 567 78.1
FAN22G0212 Fragaria x ananassa HOM05D006362 ORTHO05D008295 2.8e-252 875.2 574 78.9
Oeu021406.2 Olea europaea HOM05D006362 ORTHO05D008295 2.8e-252 875.2 572 76.9
Solyc10g006410.3 Solanum lycopersicum HOM05D006362 ORTHO05D008295 2.8e-252 875.2 561 78.4
arahy.Tifrunner.gnm1.ann1.Z96I2W Arachis hypogaea HOM05D006362 ORTHO05D008295 4.8e-252 874.4 565 77.3
Sopen10g002360 Solanum pennellii HOM05D006362 ORTHO05D008295 1.4e-251 872.8 568 77.8
Cc05_g13400 Coffea canephora HOM05D006362 ORTHO05D008295 2.4e-251 872.1 565 77.5
Phvul.011G136800 Phaseolus vulgaris HOM05D006362 ORTHO05D008295 3.1e-251 871.7 569 78.2
Medtr4g081050 Medicago truncatula HOM05D006362 ORTHO05D008295 1.2e-250 869.8 569 76.6
Psat7g162880 Pisum sativum HOM05D006362 ORTHO05D008295 9.9e-250 866.7 569 76.4
THA.LOC104818092 Tarenaya hassleriana HOM05D006362 ORTHO05D008295 1.3e-249 866.3 563 77.1
Haze_09637 Corylus avellana HOM05D006362 ORTHO05D008295 2.2e-249 865.5 628 72.5
CAN.G1781.12 Capsicum annuum HOM05D006362 ORTHO05D008295 6.4e-249 864.0 563 77.3
HanXRQChr13g0407741 Helianthus annuus HOM05D006362 ORTHO05D008295 1.9e-248 862.4 557 77.7
Nn1g07069 Nelumbo nucifera HOM05D006362 ORTHO05D008295 1.9e-248 862.4 550 79.5
PSO832G4364 Papaver somniferum HOM05D006362 ORTHO05D008295 2.4e-248 862.1 567 77.2
Sc14g0006480 Simmondsia chinensis HOM05D006362 ORTHO05D008295 5.5e-248 860.9 575 76.5
DCAR_022536 Daucus carota HOM05D006362 ORTHO05D008295 2.7e-247 858.6 589 74.9
PGR031G2573 Punica granatum HOM05D006362 ORTHO05D008295 2.5e-245 852.0 551 78.8
Ca_18860_v3 Cicer arietinum L. HOM05D006362 ORTHO05D008295 5.6e-245 850.9 553 77.8
Aqoxy1G03661 Aquilegia oxysepala HOM05D006362 ORTHO05D008295 7.4e-245 850.5 561 76.1
ECA240G1610 Erigeron canadensis HOM05D006362 ORTHO05D008295 9.6e-245 850.1 559 76.4
arahy.Tifrunner.gnm1.ann1.GJJ2CM Arachis hypogaea HOM05D006362 ORTHO05D008295 6.2e-244 847.4 549 77.8
Gorai.009G425700 Gossypium raimondii HOM05D006362 ORTHO05D008295 4.9e-241 837.8 571 75.5
CARHR090140 Cardamine hirsuta HOM05D006362 ORTHO05D008295 1.1e-240 836.6 568 76.2
Aa31LG8G2360 Aethionema arabicum HOM05D006362 ORTHO05D008295 2.1e-239 832.4 572 75.2
Carub.0003s1481 Capsella rubella HOM05D006362 ORTHO05D008295 2.1e-239 832.4 572 76.2
Thhalv10020417m.g Eutrema salsugineum HOM05D006362 ORTHO05D008295 6.0e-239 830.9 572 75.2
AL3G27550 Arabidopsis lyrata HOM05D006362 ORTHO05D008295 1.8e-238 829.3 572 75.5
BolC3t17030H Brassica oleracea HOM05D006362 ORTHO05D008295 3.9e-238 828.2 568 75.7
C03p47540 Brassica napus HOM05D006362 ORTHO05D008295 2.5e-237 825.5 568 75.4
COL.COLO4_09973 Corchorus olitorius HOM05D004186 ORTHO05D006965 2.5e-237 825.5 568 75.2
Sp3g13370 Schrenkiella parvula HOM05D006362 ORTHO05D008295 4.3e-237 824.7 570 74.4
AT3G15160 Arabidopsis thaliana HOM05D006362 ORTHO05D008295 5.7e-237 824.3 572 74.8
Peaxi162Scf00387g00613 Petunia axillaris HOM05D006362 ORTHO05D008295 1.3e-236 823.2 564 74.5
BraA03t13067Z Brassica rapa HOM05D006362 ORTHO05D008295 1.6e-236 822.8 568 75.0
ATR0697G203 Amborella trichopoda HOM05D006362 ORTHO05D008295 2.8e-236 822.0 563 74.8
A03p39180 Brassica napus HOM05D006362 ORTHO05D008295 3.7e-236 821.6 568 75.0
Rhsim06G0213400 Rhododendron simsii HOM05D006362 ORTHO05D008295 3.8e-233 811.6 614 70.4
Ah.06g182950 Amaranthus hybridus HOM05D006362 ORTHO05D008295 1.2e-231 806.6 578 70.8
AUR62020525 Chenopodium quinoa HOM05D006362 ORTHO05D008295 6.1e-231 804.3 552 74.6
Lj1C868T5 Lonicera japonica HOM05D006362 ORTHO05D008295 1.0e-230 803.5 538 77.0
Sabra11G0122000 Salix brachista HOM05D006362 ORTHO05D008295 8.8e-230 800.4 600 72.2
BcaC01g03890 Brassica carinata HOM05D006362 ORTHO05D008295 1.3e-228 796.6 590 71.0
HPP92_009387 Vanilla planifolia HOM05D006362 ORTHO05D008295 1.7e-228 796.2 567 71.4
Nitab4.5_0002229g0190 Nicotiana tabacum HOM05D006362 ORTHO05D008295 6.3e-228 794.3 592 70.6
ClCG05G014560 Citrullus lanatus HOM05D006362 ORTHO05D008295 1.4e-227 793.1 587 69.5
SGA_v2.0_scaffold80G25930 Striga asiatica HOM05D006362 ORTHO05D008295 1.4e-227 793.1 570 71.1
Gohir.A04G020300 Gossypium hirsutum HOM05D006362 ORTHO05D008295 3.1e-227 792.0 570 72.6
CDE05G0917 Ceratophyllum demersum HOM05D006362 ORTHO05D008295 7.2e-224 780.8 556 72.8
FAN17G1244 Fragaria x ananassa HOM05D006362 ORTHO05D008295 4.7e-223 778.1 572 72.9
AUR62015672 Chenopodium quinoa HOM05D006362 ORTHO05D008295 4.8e-220 768.1 580 69.3
Os04g0626900 Oryza sativa ssp. japonica HOM05D006362 ORTHO05D008295 8.2e-220 767.3 572 68.7
Lsat_1_v5_gn_5_81640 Lactuca sativa HOM05D006362 ORTHO05D008295 1.4e-219 766.5 551 72.4
Migut.M01793 Erythranthe guttata HOM05D006362 ORTHO05D008295 1.8e-219 766.1 568 69.0
EL10Ac4g07932 Beta vulgaris HOM05D006362 ORTHO05D008295 1.5e-218 763.1 564 69.9
CiPaw.11G185900 Carya illinoinensis HOM05D006362 ORTHO05D008295 1.5e-200 703.4 430 84.2
Hund23291 Selenicereus undatus HOM05D006362 ORTHO05D008295 1.9e-200 703.0 513 70.6
vmacro11753 Vaccinium macrocarpon HOM05D006362 ORTHO05D008295 1.5e-184 650.2 690 53.6
Mapoly0021s0009 Marchantia polymorpha HOM05D006362 ORTHO05D008295 7.5e-181 637.9 569 59.4
Gohir.D05G366200 Gossypium hirsutum HOM05D006362 ORTHO05D008295 4.1e-179 632.1 430 76.0
Pp3c24_12510 Physcomitrium patens HOM05D006362 ORTHO05D008295 1.2e-175 620.5 563 57.2
SMO115G0345 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 4.4e-165 585.5 556 57.6
AagrBONN_evm.TU.Sc2ySwM_117.2426 Anthoceros agrestis HOM05D006362 ORTHO05D008295 4.9e-156 555.4 569 51.5
Pp3c23_6050 Physcomitrium patens HOM05D006362 ORTHO05D008295 4.0e-150 535.8 553 54.2
BolC3t17019H Brassica oleracea HOM05D006362 ORTHO05D008295 1.8e-121 440.7 324 71.9
PGSC0003DMG403014396 Solanum tuberosum HOM05D006362 ORTHO05D008295 3.7e-119 433.0 274 78.5
HPP92_009392 Vanilla planifolia HOM05D006362 ORTHO05D008295 6.7e-105 385.6 275 72.0
Zm00001eb070060 Zea mays HOM05D006362 ORTHO05D008295 4.4e-96 356.3 283 64.0
CSS0013960 Camellia sinensis var. sinensis HOM05D006362 ORTHO05D008295 1.5e-91 341.3 222 79.7
PGSC0003DMG402014396 Solanum tuberosum HOM05D006362 ORTHO05D008295 1.5e-75 288.1 192 75.0
SEGI_18975 Sequoiadendron giganteum HOM05D006362 ORTHO05D008295 2.3e-57 227.6 166 69.9
Rhsim12G0205700 Rhododendron simsii HOM05D006362 ORTHO05D008295 6.4e-55 219.5 298 48.7
CBR_g57499 Chara braunii HOM05D006362 ORTHO05D008295 3.0e-52 210.7 240 45.0
Gorai.002G084600 Gossypium raimondii HOM05D006362 ORTHO05D008295 3.7e-47 193.7 120 78.3
Gohir.D01G063866 Gossypium hirsutum HOM05D006362 ORTHO05D008295 4.6e-45 186.8 120 76.7
SHI31860 Sapria himalayana HOM05D006362 ORTHO05D008295 5.6e-43 179.9 147 61.2
Cpa.g.sc131.92 Carica papaya HOM05D006362 ORTHO05D008295 5.2e-41 173.3 116 75.0
SEGI_13710 Sequoiadendron giganteum HOM05D006362 ORTHO05D008295 5.4e-38 163.3 132 60.6
VMungo0251G2436 Vigna mungo HOM05D006362 ORTHO05D008295 1.9e-35 154.8 115 71.3
Hma1.2p1_1609F.1_g293480 Hydrangea macrophylla HOM05D006362 ORTHO05D008295 4.2e-30 137.1 103 68.9
HPP92_009393 Vanilla planifolia HOM05D006362 ORTHO05D008295 6.2e-26 123.2 96 63.5
SMO347G0562 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 3.8e-23 114.0 178 41.0
CBR_g57501 Chara braunii HOM05D006362 ORTHO05D008295 1.0e-20 105.9 121 47.9
SMO228G0126 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 3.9e-20 104.0 191 37.7
HanXRQChr16g0507081 Helianthus annuus HOM05D006362 ORTHO05D008295 1.4e-17 95.5 82 61.0
SMO167G0061 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 1.4e-14 85.5 141 43.3
SMO111G0176 Selaginella moellendorffii HOM05D013632 ORTHO05D008295 2.5e-14 84.7 90 47.8
Cc02_g13940 Coffea canephora HOM05D006362 ORTHO05D008295 1.2e-13 82.4 55 80.0
BcaB04g20946 Brassica carinata HOM05D006362 ORTHO05D008295 4.8e-10 70.5 45 71.1
SMO009G0006 Selaginella moellendorffii HOM05D013632 ORTHO05D379378 1.1e-09 69.3 141 37.6
SMO014G0021 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 2.4e-09 68.2 179 34.1
SMO122G0015 Selaginella moellendorffii HOM05D006362 ORTHO05D374567 5.3e-09 67.0 96 40.6
Lsat_1_v5_gn_3_32440 Lactuca sativa HOM05D006362 ORTHO05D228842 4.5e-08 63.9 51 68.6
SMO118G0508 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 4.5e-08 63.9 210 28.6


User provided reference genes

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