Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr2.2937 Acer truncatum HOM05D002077 ORTHO05D000818 9.5e-240 833.2 442 100.0
Atru.chr2.2914 Acer truncatum HOM05D002077 ORTHO05D000818 8.5e-39 165.6 196 45.9
CSS0029340 Camellia sinensis var. sinensis HOM05D011823 ORTHO05D000818 9.4e-30 135.6 260 29.2
COL.COLO4_09460 Corchorus olitorius HOM05D036706 ORTHO05D000818 7.7e-24 115.9 179 38.5
COL.COLO4_16618 Corchorus olitorius HOM05D002077 ORTHO05D000818 1.3e-23 115.2 266 31.6
Aqoxy7G02866 Aquilegia oxysepala HOM05D011823 ORTHO05D014382 8.5e-23 112.5 262 29.8
Cfa000242 Carpinus fangiana HOM05D011823 ORTHO05D014382 2.7e-21 107.5 231 31.2
Aqoxy5G03957 Aquilegia oxysepala HOM05D002077 ORTHO05D000818 1.2e-19 102.1 258 24.4
TAR627G0443 Trochodendron aralioides HOM05D002077 ORTHO05D000818 7.5e-19 99.4 171 35.7
Aqoxy2G00144 Aquilegia oxysepala HOM05D011823 ORTHO05D014382 9.8e-19 99.0 262 28.2
Aqoxy2G00158 Aquilegia oxysepala HOM05D011823 ORTHO05D014382 2.2e-18 97.8 263 28.9
TWI14G1216 Tripterygium wilfordii HOM05D002077 ORTHO05D000818 2.8e-18 97.4 263 27.0
Eucgr.A02799 Eucalyptus grandis HOM05D002077 ORTHO05D000818 8.3e-18 95.9 259 25.1
Atru.chr1.476 Acer truncatum HOM05D002077 ORTHO05D000818 1.1e-17 95.5 267 28.5
Glyma.20G157500 Glycine max HOM05D002077 ORTHO05D000818 1.8e-17 94.7 264 27.3
RcHm_v2.0_Chr1g0377111 Rosa chinensis HOM05D002077 ORTHO05D000818 1.8e-17 94.7 263 28.1
arahy.Tifrunner.gnm1.ann1.KCRD8X Arachis hypogaea HOM05D002077 ORTHO05D000818 4.1e-17 93.6 260 26.2
Aqoxy7G02867 Aquilegia oxysepala HOM05D011823 ORTHO05D014382 5.4e-17 93.2 254 28.7
arahy.Tifrunner.gnm1.ann1.6H6H67 Arachis hypogaea HOM05D002077 ORTHO05D000818 1.2e-16 92.0 260 26.2
Glyma.10G236900 Glycine max HOM05D002077 ORTHO05D000818 1.2e-16 92.0 264 26.9
Lalb_Chr06g0161071 Lupinus albus HOM05D002077 ORTHO05D000818 1.2e-16 92.0 263 27.4
QL09p014520 Quercus lobata HOM05D002077 ORTHO05D000818 1.2e-16 92.0 258 24.8
Cc02_g03120 Coffea canephora HOM05D002077 ORTHO05D000818 1.6e-16 91.7 257 24.9
Dinv40739 Davidia involucrata HOM05D005684 ORTHO05D007427 1.6e-16 91.7 123 35.8
Manes.06G146400 Manihot esculenta HOM05D002077 ORTHO05D000818 2.7e-16 90.9 254 25.6
Prupe.2G293200 Prunus persica HOM05D002077 ORTHO05D000818 2.7e-16 90.9 264 26.1
Thecc.03G175300 Theobroma cacao HOM05D002077 ORTHO05D000818 2.7e-16 90.9 257 26.1
vmacro06694 Vaccinium macrocarpon HOM05D002077 ORTHO05D000818 2.7e-16 90.9 263 26.6
COL.COLO4_32276 Corchorus olitorius HOM05D037256 ORTHO05D000818 3.5e-16 90.5 171 33.3
GSVIVG01010544001 Vitis vinifera HOM05D002077 ORTHO05D000818 3.5e-16 90.5 290 24.5
FAN03G1828 Fragaria x ananassa HOM05D002077 ORTHO05D006729 4.5e-16 90.1 259 27.0
HanXRQChr07g0207061 Helianthus annuus HOM05D002077 ORTHO05D000818 4.5e-16 90.1 267 25.1
Nitab4.5_0000716g0180 Nicotiana tabacum HOM05D002077 ORTHO05D000818 4.5e-16 90.1 260 26.2
Peaxi162Scf00915g00025 Petunia axillaris HOM05D002077 ORTHO05D000818 4.5e-16 90.1 197 31.0
Actinidia34102 Actinidia chinensis HOM05D002077 ORTHO05D000818 5.9e-16 89.7 259 25.1
Gohir.A09G041000 Gossypium hirsutum HOM05D002077 ORTHO05D000818 5.9e-16 89.7 263 25.9
TAR636G1697 Trochodendron aralioides HOM05D002077 ORTHO05D000818 5.9e-16 89.7 262 26.0
COL.COLO4_14296 Corchorus olitorius HOM05D002077 ORTHO05D000818 7.7e-16 89.4 264 26.9
Nitab4.5_0003365g0050 Nicotiana tabacum HOM05D002077 ORTHO05D000818 7.7e-16 89.4 260 26.2
Atru.chr2.2845 Acer truncatum HOM05D002077 ORTHO05D000818 1.0e-15 89.0 98 46.9
Duzib205G0590 Durio zibethinus HOM05D002077 ORTHO05D000818 1.0e-15 89.0 258 24.8
Gohir.D09G041900 Gossypium hirsutum HOM05D002077 ORTHO05D000818 1.0e-15 89.0 263 25.9
Manes.02G024600 Manihot esculenta HOM05D002077 ORTHO05D000818 1.0e-15 89.0 261 28.0
Nn1g01424 Nelumbo nucifera HOM05D002077 ORTHO05D000818 1.0e-15 89.0 196 30.1
CAN.G913.3 Capsicum annuum HOM05D002077 ORTHO05D000818 1.3e-15 88.6 259 26.3
Ciclev10005501m.g Citrus clementina HOM05D002077 ORTHO05D000818 1.3e-15 88.6 259 26.3
FvH4_7g29350 Fragaria vesca HOM05D002077 ORTHO05D000818 1.3e-15 88.6 259 26.3
FAN06G1288 Fragaria x ananassa HOM05D002077 ORTHO05D006729 1.3e-15 88.6 259 26.3
FAN06G1718 Fragaria x ananassa HOM05D002077 ORTHO05D006729 1.3e-15 88.6 259 26.3
Gorai.006G048100 Gossypium raimondii HOM05D002077 ORTHO05D000818 1.3e-15 88.6 263 25.9
Solyc03g025920.4 Solanum lycopersicum HOM05D002077 ORTHO05D000818 2.3e-15 87.8 259 25.5
Sopen03g004730 Solanum pennellii HOM05D002077 ORTHO05D000818 2.3e-15 87.8 259 25.5
Medtr1g100707 Medicago truncatula HOM05D002077 ORTHO05D000818 2.9e-15 87.4 258 26.7
Aqoxy3G02725 Aquilegia oxysepala HOM05D002077 ORTHO05D000818 3.8e-15 87.0 258 25.2
Lsat_1_v5_gn_2_131821 Lactuca sativa HOM05D002077 ORTHO05D000818 3.8e-15 87.0 263 25.1
Rhsim13G0155700 Rhododendron simsii HOM05D011823 ORTHO05D014382 3.8e-15 87.0 270 28.5
PGSC0003DMG403014333 Solanum tuberosum HOM05D002077 ORTHO05D000818 3.8e-15 87.0 259 25.5
Dinv35206 Davidia involucrata HOM05D002077 ORTHO05D000818 5.0e-15 86.7 260 25.8
Eucgr.A02798 Eucalyptus grandis HOM05D002077 ORTHO05D000818 5.0e-15 86.7 258 25.2
VMungo0720G0161 Vigna mungo HOM05D002077 ORTHO05D000818 5.0e-15 86.7 262 25.6
TPR.G14327 Trifolium pratense HOM05D002077 ORTHO05D000818 6.6e-15 86.3 262 26.0
Cpa.g.sc107.40 Carica papaya HOM05D002077 ORTHO05D000818 8.6e-15 85.9 259 25.9
Medtr1g100697 Medicago truncatula HOM05D002077 ORTHO05D000818 8.6e-15 85.9 262 26.3
Rhsim03G0179600 Rhododendron simsii HOM05D002077 ORTHO05D000818 8.6e-15 85.9 258 24.8
Lj8A25T67 Lonicera japonica HOM05D002077 ORTHO05D000818 1.1e-14 85.5 262 24.8
QL09p041417 Quercus lobata HOM05D002077 ORTHO05D000818 1.1e-14 85.5 259 25.1
Ca_10779_v3 Cicer arietinum L. HOM05D002077 ORTHO05D000818 1.5e-14 85.1 261 24.5
Ciclev10021301m.g Citrus clementina HOM05D002077 ORTHO05D000818 1.5e-14 85.1 261 28.0
Dinv28453 Davidia involucrata HOM05D002077 ORTHO05D000818 1.5e-14 85.1 258 25.2
Phvul.007G069000 Phaseolus vulgaris HOM05D002077 ORTHO05D000818 1.9e-14 84.7 261 24.1
COL.COLO4_36569 Corchorus olitorius HOM05D002077 ORTHO05D000818 2.5e-14 84.3 315 22.5
Hund11495 Selenicereus undatus HOM05D002077 ORTHO05D000818 2.5e-14 84.3 256 25.4
FAN01G1848 Fragaria x ananassa HOM05D002077 ORTHO05D000818 3.3e-14 84.0 259 27.0
Aqoxy5G01533 Aquilegia oxysepala HOM05D011823 ORTHO05D014382 4.3e-14 83.6 260 25.8
DCAR_009358 Daucus carota HOM05D002077 ORTHO05D000818 4.3e-14 83.6 253 24.1
ECA232G3548 Erigeron canadensis HOM05D002077 ORTHO05D000818 4.3e-14 83.6 258 25.6
MBI18_g44743_MAGBIO Magnolia biondii HOM05D002077 ORTHO05D000818 7.2e-14 82.8 265 25.3
AL5G28390 Arabidopsis lyrata HOM05D002077 ORTHO05D000818 9.5e-14 82.4 207 28.5
AT3G48880 Arabidopsis thaliana HOM05D002077 ORTHO05D000818 9.5e-14 82.4 207 28.5
Cfa008309 Carpinus fangiana HOM05D002077 ORTHO05D000818 9.5e-14 82.4 259 23.6
Migut.F01126 Erythranthe guttata HOM05D002077 ORTHO05D000818 9.5e-14 82.4 258 21.3
Thhalv10010519m.g Eutrema salsugineum HOM05D002077 ORTHO05D000818 9.5e-14 82.4 207 28.5
Lj5g0027705 Lotus japonicus HOM05D002077 ORTHO05D000818 9.5e-14 82.4 260 24.6
PGSC0003DMG402014331 Solanum tuberosum HOM05D002077 ORTHO05D000818 9.5e-14 82.4 259 24.7
MD01G1199600 Malus domestica HOM05D002077 ORTHO05D000818 1.2e-13 82.0 262 26.7
PSO782G4919 Papaver somniferum HOM05D002077 ORTHO05D000818 1.2e-13 82.0 266 24.1
Sp5g13170 Schrenkiella parvula HOM05D002077 ORTHO05D000818 1.2e-13 82.0 207 28.5
CARHR157690 Cardamine hirsuta HOM05D002077 ORTHO05D000818 1.6e-13 81.6 207 29.0
Haze_13726 Corylus avellana HOM05D002077 ORTHO05D000818 1.6e-13 81.6 259 25.1
SalBow2G3420 Salvia bowleyana HOM05D002077 ORTHO05D000818 2.1e-13 81.3 263 22.8
CSS0043143 Camellia sinensis var. sinensis HOM05D002077 ORTHO05D000818 2.8e-13 80.9 259 23.6
SGA_v2.0_scaffold10G05344 Striga asiatica HOM05D002077 ORTHO05D000818 2.8e-13 80.9 261 23.0
CiPaw.03G105400 Carya illinoinensis HOM05D002077 ORTHO05D000818 3.6e-13 80.5 196 28.1
PSO063G0361 Papaver somniferum HOM05D002077 ORTHO05D000818 3.6e-13 80.5 265 23.8
Potri.015G139700 Populus trichocarpa HOM05D002077 ORTHO05D000818 3.6e-13 80.5 259 25.5
Carub.0005s1505 Capsella rubella HOM05D002077 ORTHO05D000818 4.7e-13 80.1 207 28.0
THA.LOC104824394 Tarenaya hassleriana HOM05D002077 ORTHO05D000818 4.7e-13 80.1 197 28.4
Aqoxy7G02717 Aquilegia oxysepala HOM05D011823 ORTHO05D014382 6.1e-13 79.7 144 29.9
PGSC0003DMG401014331 Solanum tuberosum HOM05D002077 ORTHO05D000818 8.0e-13 79.3 267 24.7
BcaC09g49912 Brassica carinata HOM05D002077 ORTHO05D000818 1.0e-12 79.0 259 25.1
BolC1t03074H Brassica oleracea HOM05D002077 ORTHO05D000818 1.0e-12 79.0 259 25.1
Aa31LG4G17390 Aethionema arabicum HOM05D002077 ORTHO05D000818 1.4e-12 78.6 269 23.8
QL12p002854 Quercus lobata HOM05D002077 ORTHO05D000818 1.4e-12 78.6 259 27.0
Solyc03g025930.4 Solanum lycopersicum HOM05D002077 ORTHO05D000818 1.4e-12 78.6 259 23.2
A01p25170 Brassica napus HOM05D002077 ORTHO05D000818 1.8e-12 78.2 201 27.9
BraA01t02425Z Brassica rapa HOM05D002077 ORTHO05D000818 1.8e-12 78.2 201 27.9
Prupe.2G293100 Prunus persica HOM05D002077 ORTHO05D000818 1.8e-12 78.2 263 26.2
PGSC0003DMG400014329 Solanum tuberosum HOM05D002077 ORTHO05D000818 1.8e-12 78.2 259 23.2
BcaB05g22980 Brassica carinata HOM05D002077 ORTHO05D000818 2.3e-12 77.8 259 25.1
C01p31370 Brassica napus HOM05D002077 ORTHO05D000818 2.3e-12 77.8 259 24.7
A06p18870 Brassica napus HOM05D002077 ORTHO05D000818 3.0e-12 77.4 207 29.5
MD07G1267400 Malus domestica HOM05D002077 ORTHO05D000818 3.0e-12 77.4 274 24.5
Sopen03g004750 Solanum pennellii HOM05D002077 ORTHO05D000818 8.9e-12 75.9 259 23.6
Sabra15G0150400 Salix brachista HOM05D002077 ORTHO05D000818 1.5e-11 75.1 259 24.7
HanXRQChr15g0495591 Helianthus annuus HOM05D002077 ORTHO05D000818 3.4e-11 73.9 262 21.4
Solyc03g025940.3 Solanum lycopersicum HOM05D002077 ORTHO05D000818 3.4e-11 73.9 259 22.8
Hma1.2p1_2482F.1_g323020 Hydrangea macrophylla HOM05D002077 ORTHO05D000818 4.4e-11 73.6 257 21.4
HPP92_008435 Vanilla planifolia HOM05D002077 ORTHO05D000818 4.4e-11 73.6 188 25.5
Hma1.2p1_3140F.1_g333050 Hydrangea macrophylla HOM05D002077 ORTHO05D000818 9.8e-11 72.4 258 21.7
HPP92_008461 Vanilla planifolia HOM05D002077 ORTHO05D000818 1.7e-10 71.6 188 25.0
Os10g0502900 Oryza sativa ssp. japonica HOM05D002077 ORTHO05D000818 2.9e-10 70.9 196 25.5
Potri.012G137700 Populus trichocarpa HOM05D002077 ORTHO05D000818 2.9e-10 70.9 259 24.7
C08p23850 Brassica napus HOM05D002077 ORTHO05D000818 3.7e-10 70.5 207 28.0
Haze_06779 Corylus avellana HOM05D002077 ORTHO05D000818 3.7e-10 70.5 134 35.1
BcaC07g39363 Brassica carinata HOM05D002077 ORTHO05D000818 4.9e-10 70.1 207 28.5
CSS0014052 Camellia sinensis var. sinensis HOM05D002077 ORTHO05D000818 6.4e-10 69.7 260 21.9
Zm00001eb044180 Zea mays HOM05D002077 ORTHO05D000818 8.3e-10 69.3 254 21.3
Psat6g199880 Pisum sativum HOM05D002077 ORTHO05D000818 1.1e-09 68.9 262 24.4
BolC8t50011H Brassica oleracea HOM05D002077 ORTHO05D000818 1.8e-09 68.2 207 27.5
BolC4t26591H Brassica oleracea HOM05D000710 ORTHO05D000336 2.4e-09 67.8 266 23.3
Sopen03g004760 Solanum pennellii HOM05D002077 ORTHO05D000818 2.4e-09 67.8 259 22.4
BcaB01g02685 Brassica carinata HOM05D002077 ORTHO05D000818 3.2e-09 67.4 272 22.4
BcaB01g02687 Brassica carinata HOM05D002077 ORTHO05D000818 3.2e-09 67.4 272 22.4
BcaB01g02690 Brassica carinata HOM05D002077 ORTHO05D000818 3.2e-09 67.4 272 22.4
BcaC02g08830 Brassica carinata HOM05D000710 ORTHO05D000336 4.1e-09 67.0 266 22.9
C04p49970 Brassica napus HOM05D000710 ORTHO05D000336 4.1e-09 67.0 266 22.9
BcaB01g02688 Brassica carinata HOM05D002077 ORTHO05D000818 5.4e-09 66.6 274 24.5
BraA04t17203Z Brassica rapa HOM05D000710 ORTHO05D000336 9.2e-09 65.9 268 23.9
COL.COLO4_28668 Corchorus olitorius HOM05D002077 ORTHO05D000818 9.2e-09 65.9 135 35.6
PGSC0003DMG400030222 Solanum tuberosum HOM05D002077 ORTHO05D000818 1.2e-08 65.5 197 24.9
TPR.G14717 Trifolium pratense HOM05D002077 ORTHO05D000818 1.6e-08 65.1 252 24.2
A04p15680 Brassica napus HOM05D000710 ORTHO05D000336 3.5e-08 63.9 265 24.2
BcaB06g27748 Brassica carinata HOM05D000710 ORTHO05D000336 4.6e-08 63.5 266 22.9
THA.LOC104806991 Tarenaya hassleriana HOM05D002077 ORTHO05D000818 4.6e-08 63.5 269 21.9
Thhalv10015605m.g Eutrema salsugineum HOM05D002077 ORTHO05D000818 5.9e-08 63.2 271 22.9
Prupe.1G012700 Prunus persica HOM05D002273 ORTHO05D000818 7.8e-08 62.8 275 25.1
Aqoxy2G00214 Aquilegia oxysepala HOM05D011823 ORTHO05D014382 1.0e-07 62.4 178 27.5
Sabra16G0021500 Salix brachista HOM05D002273 ORTHO05D000818 1.0e-07 62.4 273 22.7
RcHm_v2.0_Chr1g0377061 Rosa chinensis HOM05D002077 ORTHO05D000818 5.0e-07 60.1 134 24.6
THA.LOC104814386 Tarenaya hassleriana HOM05D002077 ORTHO05D000818 8.6e-07 59.3 253 19.8
QL08p005039 Quercus lobata HOM05D002273 ORTHO05D000818 1.5e-06 58.5 262 23.7
FvH4_5g01901 Fragaria vesca HOM05D002077 ORTHO05D000818 1.9e-06 58.2 256 18.8
AL6G46100 Arabidopsis lyrata HOM05D002077 ORTHO05D000818 2.5e-06 57.8 281 23.5
Aqoxy1G02125 Aquilegia oxysepala HOM05D002273 ORTHO05D000818 3.3e-06 57.4 271 23.6
BcaB01g00773 Brassica carinata HOM05D002077 ORTHO05D000818 3.3e-06 57.4 202 26.7


User provided reference genes

Program Settings