Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr2.2718 Acer truncatum HOM05D006220 ORTHO05D007590 2.3e-145 520.0 584 100.0
Cfa020552 Carpinus fangiana HOM05D006220 ORTHO05D007590 4.3e-107 392.9 583 77.0
Thecc.07G079000 Theobroma cacao HOM05D006220 ORTHO05D007590 1.6e-106 391.0 585 78.1
arahy.Tifrunner.gnm1.ann1.BQ9KJC Arachis hypogaea HOM05D006220 ORTHO05D007590 1.8e-100 370.9 591 79.5
COL.COLO4_09426 Corchorus olitorius HOM05D006220 ORTHO05D007590 2.3e-100 370.5 584 77.7
TWI38G2391 Tripterygium wilfordii HOM05D006220 ORTHO05D007590 6.7e-100 369.0 583 77.4
Gohir.A13G145200 Gossypium hirsutum HOM05D006220 ORTHO05D007590 1.5e-99 367.9 585 74.9
arahy.Tifrunner.gnm1.ann1.LU5I8Y Arachis hypogaea HOM05D006220 ORTHO05D007590 1.9e-99 367.5 591 76.3
Lalb_Chr20g0109761 Lupinus albus HOM05D006220 ORTHO05D007590 9.7e-99 365.2 585 80.0
Glyma.13G278800 Glycine max HOM05D006220 ORTHO05D007590 1.6e-98 364.4 584 82.7
CANSAT56G4311 Cannabis sativa HOM05D006220 ORTHO05D007590 1.8e-97 360.9 583 80.8
Hund22942 Selenicereus undatus HOM05D006220 ORTHO05D007590 1.5e-96 357.8 581 74.9
GSVIVG01014371001 Vitis vinifera HOM05D006220 ORTHO05D007590 1.3e-95 354.8 585 75.7
Sp3g13670 Schrenkiella parvula HOM05D006220 ORTHO05D007590 1.7e-95 354.4 587 71.9
Lj3g0017554 Lotus japonicus HOM05D006220 ORTHO05D007590 2.9e-95 353.6 582 80.2
Ciclev10007835m.g Citrus clementina HOM05D006220 ORTHO05D007590 5.0e-95 352.8 584 79.6
Hma1.2p1_0148F.1_g066160 Hydrangea macrophylla HOM05D006220 ORTHO05D007590 8.5e-95 352.1 582 75.9
Gohir.D13G150000 Gossypium hirsutum HOM05D006220 ORTHO05D007590 1.4e-94 351.3 585 74.9
Gorai.013G167800 Gossypium raimondii HOM05D006220 ORTHO05D007590 3.2e-94 350.1 585 74.5
Manes.03G112900 Manihot esculenta HOM05D006220 ORTHO05D007590 1.6e-93 347.8 585 74.0
HanXRQChr03g0078511 Helianthus annuus HOM05D006220 ORTHO05D007590 6.1e-93 345.9 581 69.7
MD11G1243700 Malus domestica HOM05D006220 ORTHO05D007590 2.3e-92 344.0 587 68.3
Actinidia05212 Actinidia chinensis HOM05D006220 ORTHO05D007590 6.7e-92 342.4 585 80.5
Potri.011G121700 Populus trichocarpa HOM05D006220 ORTHO05D007590 6.7e-92 342.4 585 82.9
Prupe.4G184800 Prunus persica HOM05D006220 ORTHO05D007590 6.7e-92 342.4 583 68.1
CSS0010017 Camellia sinensis var. sinensis HOM05D006220 ORTHO05D007590 8.8e-92 342.0 585 74.0
RcHm_v2.0_Chr5g0034391 Rosa chinensis HOM05D006220 ORTHO05D007590 1.1e-91 341.7 583 73.9
PGR031G1387 Punica granatum HOM05D006220 ORTHO05D007590 1.5e-91 341.3 582 73.2
FvH4_3g20490 Fragaria vesca HOM05D006220 ORTHO05D007590 1.3e-90 338.2 584 83.0
FAN25G1684 Fragaria x ananassa HOM05D006220 ORTHO05D007590 2.2e-90 337.4 584 81.7
FAN16G3027 Fragaria x ananassa HOM05D006220 ORTHO05D007590 2.4e-89 334.0 584 82.5
CAN.G1110.52 Capsicum annuum HOM05D006220 ORTHO05D007590 4.1e-89 333.2 585 75.4
Solyc10g006930.4 Solanum lycopersicum HOM05D006220 ORTHO05D007590 6.9e-89 332.4 585 75.2
Sopen10g002840 Solanum pennellii HOM05D006220 ORTHO05D007590 6.9e-89 332.4 585 76.1
Glyma.12G222700 Glycine max HOM05D006220 ORTHO05D007590 9.1e-89 332.0 583 76.7
Cc05_g12250 Coffea canephora HOM05D006220 ORTHO05D007590 1.3e-87 328.2 583 75.3
FAN11G1997 Fragaria x ananassa HOM05D006220 ORTHO05D007590 1.4e-86 324.7 598 74.2
Zm00001eb259320 Zea mays HOM05D006220 ORTHO05D007590 4.2e-86 323.2 585 71.1
Os02g0826600 Oryza sativa ssp. japonica HOM05D006220 ORTHO05D007590 5.5e-86 322.8 584 68.3
TAR626G0245 Trochodendron aralioides HOM05D006220 ORTHO05D007590 7.2e-86 322.4 564 80.1
TPR.G38952 Trifolium pratense HOM05D006220 ORTHO05D007590 1.6e-85 321.2 598 72.7
Duzib213G0302 Durio zibethinus HOM05D006220 ORTHO05D007590 6.1e-85 319.3 499 76.6
AL3G27960 Arabidopsis lyrata HOM05D006220 ORTHO05D007590 6.7e-84 315.8 585 69.9
AT3G15410 Arabidopsis thaliana HOM05D006220 ORTHO05D007590 2.6e-83 313.9 585 69.2
Psat5g245040 Pisum sativum HOM05D006220 ORTHO05D007590 4.4e-83 313.2 585 78.6
Aqoxy4G01032 Aquilegia oxysepala HOM05D006220 ORTHO05D007590 2.2e-82 310.8 583 77.4
THA.LOC104810484 Tarenaya hassleriana HOM05D006220 ORTHO05D007590 2.8e-82 310.5 582 71.3
VMungo1080G0525 Vigna mungo HOM05D006220 ORTHO05D007590 1.4e-81 308.1 562 81.1
Sed0021838 Sechium edule HOM05D006220 ORTHO05D007590 2.4e-81 307.4 581 71.6
Carub.0003s1514 Capsella rubella HOM05D006220 ORTHO05D007590 3.1e-81 307.0 585 69.6
PSO210G4054 Papaver somniferum HOM05D006220 ORTHO05D007590 7.0e-81 305.8 582 77.3
MELO3C016523.2 Cucumis melo HOM05D006220 ORTHO05D007590 1.2e-80 305.1 583 68.1
Phvul.005G083000 Phaseolus vulgaris HOM05D006220 ORTHO05D007590 2.6e-80 303.9 586 79.2
BcaB06g29573 Brassica carinata HOM05D006220 ORTHO05D007590 3.5e-80 303.5 584 68.2
Rhsim06G0196800 Rhododendron simsii HOM05D006220 ORTHO05D007590 4.5e-80 303.1 602 75.4
Medtr2g079560 Medicago truncatula HOM05D006220 ORTHO05D007590 5.9e-80 302.8 591 76.5
CDE05G0932 Ceratophyllum demersum HOM05D006220 ORTHO05D007590 1.3e-79 301.6 587 73.8
ECA240G2314 Erigeron canadensis HOM05D006220 ORTHO05D007590 1.3e-79 301.6 584 65.2
CsaV3_3G006190 Cucumis sativus L. HOM05D006220 ORTHO05D007590 1.6e-77 294.7 583 66.4
AUR62034280 Chenopodium quinoa HOM05D006220 ORTHO05D007590 2.1e-77 294.3 574 59.6
Thhalv10020366m.g Eutrema salsugineum HOM05D006220 ORTHO05D007590 6.1e-77 292.7 609 65.2
Cpa.g.sc80.40 Carica papaya HOM05D006220 ORTHO05D007590 8.0e-77 292.4 590 67.5
PSO832G1845 Papaver somniferum HOM05D006220 ORTHO05D007590 1.0e-76 292.0 582 78.5
AUR62029364 Chenopodium quinoa HOM05D006220 ORTHO05D007590 1.4e-76 291.6 583 52.3
Dinv08311 Davidia involucrata HOM05D006220 ORTHO05D007590 1.4e-76 291.6 408 81.9
BraA05t22221Z Brassica rapa HOM05D006220 ORTHO05D007590 4.0e-76 290.0 590 66.8
DCAR_017149 Daucus carota HOM05D006220 ORTHO05D007590 5.2e-76 289.7 499 75.4
Nn1g06599 Nelumbo nucifera HOM05D006220 ORTHO05D007590 5.2e-76 289.7 630 71.1
CARHR090460 Cardamine hirsuta HOM05D006220 ORTHO05D007590 1.1e-75 288.5 585 68.0
Nitab4.5_0000207g0180 Nicotiana tabacum HOM05D006220 ORTHO05D007590 2.0e-75 287.7 655 57.9
Eucgr.F03334 Eucalyptus grandis HOM05D006220 ORTHO05D007590 4.4e-75 286.6 580 69.5
ATR0680G100 Amborella trichopoda HOM05D006220 ORTHO05D007590 5.7e-75 286.2 584 78.9
HPP92_022050 Vanilla planifolia HOM05D006220 ORTHO05D007590 7.5e-75 285.8 588 65.6
MD00G1090000 Malus domestica HOM05D006220 ORTHO05D007590 1.3e-71 275.0 555 65.9
Oeu008016.1 Olea europaea HOM05D006220 ORTHO05D007590 1.5e-70 271.6 318 65.4
BolC5t33860H Brassica oleracea HOM05D006220 ORTHO05D007590 2.5e-70 270.8 590 64.9
CiPaw.11G172800 Carya illinoinensis HOM05D006220 ORTHO05D007590 4.2e-70 270.0 431 80.0
Sabra11G0107700 Salix brachista HOM05D006220 ORTHO05D007590 4.2e-70 270.0 685 63.1
EL10Ac4g08136 Beta vulgaris HOM05D006220 ORTHO05D007590 1.4e-68 265.0 562 72.1
A05p33990 Brassica napus HOM05D006220 ORTHO05D007590 1.7e-66 258.1 563 65.4
Migut.H01927 Erythranthe guttata HOM05D006220 ORTHO05D007590 8.3e-66 255.8 583 68.8
MBI17_g46353_MAGBIO Magnolia biondii HOM05D006220 ORTHO05D007590 2.4e-65 254.2 407 72.7
Aa31LG8G2650 Aethionema arabicum HOM05D006220 ORTHO05D007590 9.1e-65 252.3 642 58.3
Lsat_1_v5_gn_9_97140 Lactuca sativa HOM05D006220 ORTHO05D007590 3.8e-63 246.9 498 61.0
BcaC05g29008 Brassica carinata HOM05D006220 ORTHO05D007590 8.5e-63 245.7 562 65.3
SGA_v2.0_scaffold9G04934 Striga asiatica HOM05D006220 ORTHO05D007590 1.9e-62 244.6 598 61.2
vmacro11856 Vaccinium macrocarpon HOM05D006220 ORTHO05D007590 7.2e-62 242.7 575 68.3
MSTRG.14365 Avicennia marina HOM05D006220 ORTHO05D007590 6.8e-60 236.1 585 63.9
ClCG10G006830 Citrullus lanatus HOM05D006220 ORTHO05D007590 4.4e-59 233.4 524 65.3
Sc16g0006920 Simmondsia chinensis HOM05D006220 ORTHO05D007590 2.8e-58 230.7 500 67.4
Peaxi162Scf00027g02813 Petunia axillaris HOM05D006220 ORTHO05D007590 7.0e-57 226.1 564 69.0
Hma1.2p1_0148F.1_g066170 Hydrangea macrophylla HOM05D006220 ORTHO05D007590 1.9e-54 218.0 323 66.6
Pp3c6_15930 Physcomitrium patens HOM05D006220 ORTHO05D007590 1.9e-54 218.0 594 61.1
Nitab4.5_0001320g0170 Nicotiana tabacum HOM05D006220 ORTHO05D007590 4.0e-52 210.3 315 55.6
Mapoly0029s0091 Marchantia polymorpha HOM05D006220 ORTHO05D007590 3.2e-49 200.7 588 61.7
Haze_09468 Corylus avellana HOM05D006220 ORTHO05D007590 2.7e-48 197.6 222 63.5
Lj1A847G19 Lonicera japonica HOM05D006220 ORTHO05D007590 1.2e-45 188.7 543 68.5
C05p51740 Brassica napus HOM05D006220 ORTHO05D007590 8.0e-45 186.0 518 65.6
SalBow7G3592 Salvia bowleyana HOM05D006220 ORTHO05D007590 1.4e-44 185.3 558 54.3
AagrBONN_evm.TU.Sc2ySwM_362.1464 Anthoceros agrestis HOM05D006220 ORTHO05D007590 1.2e-43 182.2 591 52.3
SMO200G0168 Selaginella moellendorffii HOM05D006220 ORTHO05D007590 2.9e-42 177.6 584 64.0
unitig_26.g9535 Utricularia gibba HOM05D006220 ORTHO05D007590 1.1e-41 175.6 558 34.8
arahy.Tifrunner.gnm1.ann1.XCJ8AH Arachis hypogaea HOM05D006220 ORTHO05D007590 8.6e-39 166.0 236 55.9
MD11G1243500 Malus domestica HOM05D006220 ORTHO05D007590 2.1e-32 144.8 198 64.1
Sabra11G0106700 Salix brachista HOM05D006220 ORTHO05D007590 1.2e-24 119.0 75 78.7
Sabra11G0107000 Salix brachista HOM05D006220 ORTHO05D007590 1.2e-24 119.0 75 78.7
Sabra11G0105900 Salix brachista HOM05D006220 ORTHO05D007590 3.5e-24 117.5 75 77.3
CBR_g29878 Chara braunii HOM05D006220 ORTHO05D007590 6.0e-24 116.7 236 42.4
Sabra11G0105600 Salix brachista HOM05D006220 ORTHO05D007590 7.8e-24 116.3 75 77.3
Nitab4.5_0001320g0180 Nicotiana tabacum HOM05D006220 ORTHO05D007590 5.6e-22 110.2 98 62.2
HPP92_027622 Vanilla planifolia HOM05D006220 ORTHO05D007590 6.2e-21 106.7 75 66.7
FAN11G3846 Fragaria x ananassa HOM05D000189 ORTHO05D007610 1.8e-20 105.1 142 43.0
Gohir.1Z049312 Gossypium hirsutum HOM05D006220 ORTHO05D007590 3.8e-18 97.4 80 67.5
vmacro07967 Vaccinium macrocarpon HOM05D004270 ORTHO05D007590 7.1e-17 93.2 64 68.8
Cc05_g12270 Coffea canephora HOM05D006220 ORTHO05D007590 2.1e-16 91.7 109 79.8
Cc05_g12290 Coffea canephora HOM05D006220 ORTHO05D007590 2.1e-16 91.7 109 79.8
Cc05_g12300 Coffea canephora HOM05D006220 ORTHO05D007590 2.1e-16 91.7 109 79.8
HanXRQChr09g0260971 Helianthus annuus HOM05D006220 ORTHO05D007590 7.8e-16 89.7 60 70.0
Haze_09464 Corylus avellana HOM05D006220 ORTHO05D007590 1.7e-15 88.6 53 77.4
Atru.chr2.2722 Acer truncatum HOM05D006220 ORTHO05D017154 2.3e-15 88.2 46 95.7
Thecc.07G078400 Theobroma cacao HOM05D006220 ORTHO05D007590 5.1e-15 87.0 102 74.5
CBR_g29877 Chara braunii HOM05D005358 ORTHO05D006384 6.2e-13 80.1 75 49.3
Lsat_1_v5_gn_9_85500 Lactuca sativa HOM05D006220 ORTHO05D007590 2.6e-11 74.7 102 44.1
Sc13g0008670 Simmondsia chinensis HOM05D006220 ORTHO05D007590 1.7e-10 72.0 98 68.4
AL230U10010 Arabidopsis lyrata HOM05D006220 ORTHO05D007590 8.4e-10 69.7 40 85.0
Cre01.g054100 Chlamydomonas reinhardtii HOM05D006220 ORTHO05D007590 1.1e-06 59.3 42 69.0


User provided reference genes

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