Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr2.1290 Acer truncatum HOM05D004184 ORTHO05D004863 7.1e-22 106.3 51 100.0
Pp3c3_27450 Physcomitrium patens HOM05D004184 ORTHO05D004863 1.8e-09 65.1 47 72.3
CBR_g26311 Chara braunii HOM05D004184 ORTHO05D004863 4.0e-09 63.9 47 70.2
Cre17.g725050 Chlamydomonas reinhardtii HOM05D004184 ORTHO05D004863 4.0e-09 63.9 47 70.2
AagrBONN_evm.TU.Sc2ySwM_369.241 Anthoceros agrestis HOM05D004184 ORTHO05D004863 5.3e-09 63.5 46 71.7
HanXRQChr14g0452711 Helianthus annuus HOM05D004184 ORTHO05D004863 5.3e-09 63.5 46 71.7
Lj3g0017390 Lotus japonicus HOM05D004184 ORTHO05D004863 5.3e-09 63.5 46 71.7
Potri.004G211600 Populus trichocarpa HOM05D004184 ORTHO05D004863 5.3e-09 63.5 46 71.7
Manes.11G146400 Manihot esculenta HOM05D004184 ORTHO05D004863 6.9e-09 63.2 46 71.7
Thecc.09G341900 Theobroma cacao HOM05D004184 ORTHO05D004863 6.9e-09 63.2 46 71.7
AL5G23710 Arabidopsis lyrata HOM05D004184 ORTHO05D004863 1.2e-08 62.4 47 68.1
SMO347G0051 Selaginella moellendorffii HOM05D004184 ORTHO05D004863 1.2e-08 62.4 47 70.2
Atru.chr3.3614 Acer truncatum HOM05D004184 ORTHO05D004863 1.5e-08 62.0 46 71.7
COL.COLO4_18323 Corchorus olitorius HOM05D004184 ORTHO05D004863 1.5e-08 62.0 46 69.6
MD03G1119300 Malus domestica HOM05D004184 ORTHO05D004863 2.0e-08 61.6 46 69.6
Cpa.g.sc65.3 Carica papaya HOM05D004184 ORTHO05D004863 2.6e-08 61.2 46 69.6
Thhalv10002757m.g Eutrema salsugineum HOM05D004184 ORTHO05D004863 2.6e-08 61.2 46 69.6
Mapoly0065s0096 Marchantia polymorpha HOM05D004184 ORTHO05D004863 2.6e-08 61.2 47 66.0
MCO15G432 Micromonas commoda HOM05D004184 ORTHO05D004863 2.6e-08 61.2 46 69.6
Os11g0145400 Oryza sativa ssp. japonica HOM05D004184 ORTHO05D004863 2.6e-08 61.2 46 69.6
Os12g0143100 Oryza sativa ssp. japonica HOM05D004184 ORTHO05D004863 2.6e-08 61.2 46 69.6
Duzib106G2042 Durio zibethinus HOM05D004184 ORTHO05D004863 3.4e-08 60.8 46 71.7
Duzib114G0898 Durio zibethinus HOM05D004184 ORTHO05D004863 3.4e-08 60.8 46 71.7
Duzib128G1839 Durio zibethinus HOM05D004184 ORTHO05D004863 3.4e-08 60.8 46 71.7
Gohir.A06G167700 Gossypium hirsutum HOM05D004184 ORTHO05D004863 3.4e-08 60.8 46 71.7
Gohir.D06G175000 Gossypium hirsutum HOM05D004184 ORTHO05D004863 3.4e-08 60.8 46 71.7
Gohir.D06G175100 Gossypium hirsutum HOM05D004184 ORTHO05D004863 3.4e-08 60.8 46 71.7
Gorai.010G205400 Gossypium raimondii HOM05D004184 ORTHO05D004863 3.4e-08 60.8 46 71.7
Gorai.010G205500 Gossypium raimondii HOM05D004184 ORTHO05D004863 3.4e-08 60.8 46 71.7
Medtr3g084140 Medicago truncatula HOM05D004184 ORTHO05D004863 3.4e-08 60.8 46 69.6
Thecc.10G075300 Theobroma cacao HOM05D004184 ORTHO05D004863 3.4e-08 60.8 46 71.7
arahy.Tifrunner.gnm1.ann1.97XRIQ Arachis hypogaea HOM05D004184 ORTHO05D004863 4.4e-08 60.5 46 69.6
arahy.Tifrunner.gnm1.ann1.AT8ALT Arachis hypogaea HOM05D004184 ORTHO05D004863 4.4e-08 60.5 46 69.6
arahy.Tifrunner.gnm1.ann1.D4REW6 Arachis hypogaea HOM05D004184 ORTHO05D004863 4.4e-08 60.5 46 69.6
arahy.Tifrunner.gnm1.ann1.JTH4ZG Arachis hypogaea HOM05D004184 ORTHO05D004863 4.4e-08 60.5 46 69.6
arahy.Tifrunner.gnm1.ann1.R2A6R9 Arachis hypogaea HOM05D004184 ORTHO05D004863 4.4e-08 60.5 46 69.6
Cfa011309 Carpinus fangiana HOM05D004184 ORTHO05D004863 4.4e-08 60.5 46 69.6
Ca_16404_v3 Cicer arietinum L. HOM05D004184 ORTHO05D004863 4.4e-08 60.5 46 69.6
Ca_16412_v3 Cicer arietinum L. HOM05D004184 ORTHO05D004863 4.4e-08 60.5 46 69.6
DCAR_018804 Daucus carota HOM05D004184 ORTHO05D004863 4.4e-08 60.5 46 69.6
Migut.D02230 Erythranthe guttata HOM05D004184 ORTHO05D004863 4.4e-08 60.5 46 69.6
FvH4_3g32020 Fragaria vesca HOM05D004184 ORTHO05D004863 4.4e-08 60.5 46 69.6
FAN11G0673 Fragaria x ananassa HOM05D004184 ORTHO05D004863 4.4e-08 60.5 46 69.6
Glyma.13G221100 Glycine max HOM05D004184 ORTHO05D004863 4.4e-08 60.5 46 69.6
Glyma.15G091400 Glycine max HOM05D004184 ORTHO05D004863 4.4e-08 60.5 46 69.6
Gohir.D08G216100 Gossypium hirsutum HOM05D004184 ORTHO05D004863 4.4e-08 60.5 46 69.6
Gorai.004G230000 Gossypium raimondii HOM05D004184 ORTHO05D004863 4.4e-08 60.5 46 69.6
Lalb_Chr15g0086671 Lupinus albus HOM05D004184 ORTHO05D004863 4.4e-08 60.5 46 69.6
Manes.08G007500 Manihot esculenta HOM05D004184 ORTHO05D004863 4.4e-08 60.5 46 71.7
Manes.09G068300 Manihot esculenta HOM05D004184 ORTHO05D004863 4.4e-08 60.5 46 71.7
Nn3g19559 Nelumbo nucifera HOM05D004184 ORTHO05D004863 4.4e-08 60.5 46 69.6
Phvul.006G167900 Phaseolus vulgaris HOM05D004184 ORTHO05D004863 4.4e-08 60.5 46 69.6
Psat5g100120 Pisum sativum HOM05D004184 ORTHO05D004863 4.4e-08 60.5 46 69.6
TPR.G25376 Trifolium pratense HOM05D004184 ORTHO05D004863 4.4e-08 60.5 46 69.6
Ah.13g077000 Amaranthus hybridus HOM05D004184 ORTHO05D004863 5.8e-08 60.1 46 69.6
Cpa.g.sc53.87 Carica papaya HOM05D004184 ORTHO05D004863 5.8e-08 60.1 46 69.6
AUR62024961 Chenopodium quinoa HOM05D004184 ORTHO05D004863 5.8e-08 60.1 46 69.6
AUR62035681 Chenopodium quinoa HOM05D004184 ORTHO05D004863 5.8e-08 60.1 46 69.6
AUR62042195 Chenopodium quinoa HOM05D004184 ORTHO05D004863 5.8e-08 60.1 46 69.6
Gohir.A08G198700 Gossypium hirsutum HOM05D004184 ORTHO05D004863 5.8e-08 60.1 46 69.6
Nn2g10813 Nelumbo nucifera HOM05D004184 ORTHO05D004863 5.8e-08 60.1 46 69.6
Nn2g13109 Nelumbo nucifera HOM05D004184 ORTHO05D004863 5.8e-08 60.1 46 69.6
Potri.010G223100 Populus trichocarpa HOM05D004184 ORTHO05D004863 5.8e-08 60.1 46 69.6
PGR142G3512 Punica granatum HOM05D004184 ORTHO05D004863 5.8e-08 60.1 46 69.6
Sabra10G0172500 Salix brachista HOM05D004184 ORTHO05D004863 5.8e-08 60.1 46 69.6
TPR.G11596 Trifolium pratense HOM05D004184 ORTHO05D004863 5.8e-08 60.1 46 69.6
HPP92_005153 Vanilla planifolia HOM05D004184 ORTHO05D004863 5.8e-08 60.1 46 69.6
PSO063G1298 Papaver somniferum HOM05D004184 ORTHO05D004863 7.6e-08 59.7 47 68.1
PSO339G1327 Papaver somniferum HOM05D004184 ORTHO05D004863 7.6e-08 59.7 47 68.1
PSO339G3297 Papaver somniferum HOM05D004184 ORTHO05D004863 7.6e-08 59.7 47 68.1
PSO384G0873 Papaver somniferum HOM05D004184 ORTHO05D004863 7.6e-08 59.7 47 68.1
CAN.G219.65 Capsicum annuum HOM05D004184 ORTHO05D004863 9.9e-08 59.3 46 69.6
Cc01_g11050 Coffea canephora HOM05D004184 ORTHO05D004863 9.9e-08 59.3 46 69.6
FvH4_6g15950 Fragaria vesca HOM05D004184 ORTHO05D004863 9.9e-08 59.3 46 69.6
FAN02G1153 Fragaria x ananassa HOM05D004184 ORTHO05D004863 9.9e-08 59.3 46 69.6
FAN02G3659 Fragaria x ananassa HOM05D004184 ORTHO05D004863 9.9e-08 59.3 46 69.6
FAN05G1209 Fragaria x ananassa HOM05D004184 ORTHO05D004863 9.9e-08 59.3 46 69.6
FAN09G4380 Fragaria x ananassa HOM05D004184 ORTHO05D004863 9.9e-08 59.3 46 69.6
FAN14G0292 Fragaria x ananassa HOM05D004184 ORTHO05D004863 9.9e-08 59.3 46 69.6
MD04G1097200 Malus domestica HOM05D004184 ORTHO05D004863 9.9e-08 59.3 46 69.6
MD12G1118400 Malus domestica HOM05D004184 ORTHO05D004863 9.9e-08 59.3 46 69.6
Nitab4.5_0000707g0150 Nicotiana tabacum HOM05D004184 ORTHO05D004863 9.9e-08 59.3 46 69.6
Nitab4.5_0004053g0030 Nicotiana tabacum HOM05D004184 ORTHO05D004863 9.9e-08 59.3 46 69.6
Prupe.6G236300 Prunus persica HOM05D004184 ORTHO05D004863 9.9e-08 59.3 46 69.6
RcHm_v2.0_Chr3g0469651 Rosa chinensis HOM05D004184 ORTHO05D004863 9.9e-08 59.3 46 69.6
Solyc01g087620.3 Solanum lycopersicum HOM05D004184 ORTHO05D004863 9.9e-08 59.3 46 69.6
Sopen01g034590 Solanum pennellii HOM05D004184 ORTHO05D004863 9.9e-08 59.3 46 69.6
AT3G45180 Arabidopsis thaliana HOM05D004184 ORTHO05D004863 1.3e-07 58.9 46 67.4
CSS0007140 Camellia sinensis var. sinensis HOM05D004184 ORTHO05D004863 1.3e-07 58.9 46 69.6
CSS0014649 Camellia sinensis var. sinensis HOM05D004184 ORTHO05D004863 1.3e-07 58.9 46 69.6
CSS0037040 Camellia sinensis var. sinensis HOM05D004184 ORTHO05D004863 1.3e-07 58.9 46 69.6
CANSAT56G0430 Cannabis sativa HOM05D004184 ORTHO05D004863 1.3e-07 58.9 46 67.4
CANSAT56G0757 Cannabis sativa HOM05D004184 ORTHO05D004863 1.3e-07 58.9 46 67.4
CANSAT56G0833 Cannabis sativa HOM05D004184 ORTHO05D004863 1.3e-07 58.9 46 67.4
CANSAT56G3079 Cannabis sativa HOM05D004184 ORTHO05D004863 1.3e-07 58.9 46 67.4
FAN25G3531 Fragaria x ananassa HOM05D004184 ORTHO05D004863 1.3e-07 58.9 46 67.4
Os02g0628800 Oryza sativa ssp. japonica HOM05D004184 ORTHO05D004863 1.3e-07 58.9 47 66.0
Rhsim03G0120100 Rhododendron simsii HOM05D004184 ORTHO05D004863 1.3e-07 58.9 46 69.6
Rhsim09G0151300 Rhododendron simsii HOM05D004184 ORTHO05D004863 1.3e-07 58.9 46 69.6
TAR623G0434 Trochodendron aralioides HOM05D004184 ORTHO05D004863 1.3e-07 58.9 46 67.4
vmacro04867 Vaccinium macrocarpon HOM05D004184 ORTHO05D004863 1.3e-07 58.9 46 69.6
Atru.chr12.761 Acer truncatum HOM05D004184 ORTHO05D004863 1.7e-07 58.5 46 67.4
Atru.chr12.785 Acer truncatum HOM05D004184 ORTHO05D004863 1.7e-07 58.5 46 67.4
Ah.02g113080 Amaranthus hybridus HOM05D004184 ORTHO05D004863 1.7e-07 58.5 46 67.4
ATR0665G147 Amborella trichopoda HOM05D004184 ORTHO05D004863 1.7e-07 58.5 46 67.4
EL10Ac6g13388 Beta vulgaris HOM05D004184 ORTHO05D004863 1.7e-07 58.5 46 67.4
EL10Ac6g15231 Beta vulgaris HOM05D004184 ORTHO05D004863 1.7e-07 58.5 46 67.4
EL10Ac9g22532 Beta vulgaris HOM05D004184 ORTHO05D004863 1.7e-07 58.5 46 67.4
CiPaw.13G114000 Carya illinoinensis HOM05D004184 ORTHO05D004863 1.7e-07 58.5 46 67.4
CDE06G0371 Ceratophyllum demersum HOM05D004184 ORTHO05D004863 1.7e-07 58.5 46 67.4
Ciclev10033494m.g Citrus clementina HOM05D004184 ORTHO05D004863 1.7e-07 58.5 46 67.4
Duzib170G0173 Durio zibethinus HOM05D004184 ORTHO05D004863 1.7e-07 58.5 46 67.4
ECA238G0827 Erigeron canadensis HOM05D004184 ORTHO05D004863 1.7e-07 58.5 46 67.4
Migut.N02593 Erythranthe guttata HOM05D004184 ORTHO05D004863 1.7e-07 58.5 46 67.4
Eucgr.J00924 Eucalyptus grandis HOM05D004184 ORTHO05D004863 1.7e-07 58.5 46 67.4
HanXRQChr16g0532931 Helianthus annuus HOM05D004184 ORTHO05D004863 1.7e-07 58.5 46 67.4
Lsat_1_v5_gn_2_112360 Lactuca sativa HOM05D004184 ORTHO05D004863 1.7e-07 58.5 46 67.4
Lalb_Chr18g0055181 Lupinus albus HOM05D004184 ORTHO05D004863 1.7e-07 58.5 46 67.4
Mapoly0159s0011 Marchantia polymorpha HOM05D004184 ORTHO05D004863 1.7e-07 58.5 47 66.0
Oeu013466.1 Olea europaea HOM05D004184 ORTHO05D004863 1.7e-07 58.5 46 67.4
Oeu056307.1 Olea europaea HOM05D004184 ORTHO05D004863 1.7e-07 58.5 46 67.4
Prupe.6G102700 Prunus persica HOM05D004184 ORTHO05D004863 1.7e-07 58.5 46 67.4
QL01p021954 Quercus lobata HOM05D004184 ORTHO05D004863 1.7e-07 58.5 46 67.4
QL07p044373 Quercus lobata HOM05D004184 ORTHO05D004863 1.7e-07 58.5 46 67.4
Sc15g0001480 Simmondsia chinensis HOM05D004184 ORTHO05D004863 1.7e-07 58.5 45 66.7
Sc20g0001810 Simmondsia chinensis HOM05D004184 ORTHO05D004863 1.7e-07 58.5 46 67.4
THA.LOC109117042 Tarenaya hassleriana HOM05D004184 ORTHO05D004863 1.7e-07 58.5 46 67.4
THA.LOC109117094 Tarenaya hassleriana HOM05D004184 ORTHO05D004863 1.7e-07 58.5 46 67.4
TWI53G0713 Tripterygium wilfordii HOM05D004184 ORTHO05D004863 1.7e-07 58.5 46 67.4
TAR369G0716 Trochodendron aralioides HOM05D004184 ORTHO05D004863 1.7e-07 58.5 46 67.4
Aa31LG9G12410 Aethionema arabicum HOM05D004184 ORTHO05D004863 2.2e-07 58.2 46 67.4
AL8G19320 Arabidopsis lyrata HOM05D004184 ORTHO05D004863 2.2e-07 58.2 46 67.4
AT5G42300 Arabidopsis thaliana HOM05D004184 ORTHO05D004863 2.2e-07 58.2 46 67.4
BcaB02g08018 Brassica carinata HOM05D004184 ORTHO05D004863 2.2e-07 58.2 46 67.4
BcaB04g20523 Brassica carinata HOM05D004184 ORTHO05D004863 2.2e-07 58.2 46 67.4
BcaC09g49169 Brassica carinata HOM05D004184 ORTHO05D004863 2.2e-07 58.2 46 67.4
A01p32830 Brassica napus HOM05D004184 ORTHO05D004863 2.2e-07 58.2 46 67.4
C01p41920 Brassica napus HOM05D004184 ORTHO05D004863 2.2e-07 58.2 46 67.4
BolC1t04148H Brassica oleracea HOM05D004184 ORTHO05D004863 2.2e-07 58.2 46 67.4
BraA01t03406Z Brassica rapa HOM05D004184 ORTHO05D004863 2.2e-07 58.2 46 67.4
Carub.0008s0690 Capsella rubella HOM05D004184 ORTHO05D004863 2.2e-07 58.2 46 67.4
CARHR284900 Cardamine hirsuta HOM05D004184 ORTHO05D004863 2.2e-07 58.2 46 67.4
ClCG01G013620 Citrullus lanatus HOM05D004184 ORTHO05D004863 2.2e-07 58.2 46 67.4
ClCG08G007540 Citrullus lanatus HOM05D004184 ORTHO05D004863 2.2e-07 58.2 46 67.4
MELO3C019800.2 Cucumis melo HOM05D004184 ORTHO05D004863 2.2e-07 58.2 46 67.4
MELO3C035361.2 Cucumis melo HOM05D004184 ORTHO05D004863 2.2e-07 58.2 46 67.4
CsaV3_6G036470 Cucumis sativus L. HOM05D004184 ORTHO05D004863 2.2e-07 58.2 46 67.4
DCAR_019101 Daucus carota HOM05D004184 ORTHO05D004863 2.2e-07 58.2 46 67.4
Potri.008G039100 Populus trichocarpa HOM05D004184 ORTHO05D004863 2.2e-07 58.2 46 67.4
Sp7g08300 Schrenkiella parvula HOM05D004184 ORTHO05D004863 2.2e-07 58.2 46 67.4
Sed0000683 Sechium edule HOM05D004184 ORTHO05D004863 2.2e-07 58.2 46 67.4
Sed0011709 Sechium edule HOM05D004184 ORTHO05D004863 2.2e-07 58.2 46 67.4
CARHR150790 Cardamine hirsuta HOM05D004184 ORTHO05D004863 2.9e-07 57.8 44 65.9
Cpa.g.sc3.475 Carica papaya HOM05D004184 ORTHO05D004863 4.9e-07 57.0 46 63.0
QL07p044403 Quercus lobata HOM05D004184 ORTHO05D004863 6.4e-07 56.6 46 65.2
HPP92_028504 Vanilla planifolia HOM05D004184 ORTHO05D004863 8.4e-07 56.2 45 66.7


User provided reference genes

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