Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr13.955 Acer truncatum HOM05D004775 ORTHO05D005351 3.2e-118 428.3 201 100.0
Duzib093G0042 Durio zibethinus HOM05D004775 ORTHO05D005351 1.8e-100 369.4 199 85.9
COL.COLO4_35296 Corchorus olitorius HOM05D004775 ORTHO05D005351 5.7e-99 364.4 199 84.4
Thecc.08G074700 Theobroma cacao HOM05D004775 ORTHO05D005351 2.8e-98 362.1 199 83.9
Gohir.A05G216900 Gossypium hirsutum HOM05D004775 ORTHO05D005351 8.2e-98 360.5 197 83.2
Gohir.D05G220600 Gossypium hirsutum HOM05D004775 ORTHO05D005351 4.1e-97 358.2 197 82.2
Ciclev10002525m.g Citrus clementina HOM05D004775 ORTHO05D005351 9.1e-97 357.1 203 81.8
Manes.18G057500 Manihot esculenta HOM05D004775 ORTHO05D005351 9.1e-97 357.1 199 82.4
CiPaw.07G162400 Carya illinoinensis HOM05D004775 ORTHO05D005351 7.7e-96 354.0 200 82.0
Potri.002G109800 Populus trichocarpa HOM05D004775 ORTHO05D005351 7.7e-96 354.0 201 81.6
QL12p039787 Quercus lobata HOM05D004775 ORTHO05D005351 1.3e-95 353.2 202 82.7
Gorai.002G138100 Gossypium raimondii HOM05D004775 ORTHO05D005351 2.9e-95 352.1 199 79.9
Prupe.1G538600 Prunus persica HOM05D004775 ORTHO05D005351 2.9e-95 352.1 197 82.2
Gohir.A01G125800 Gossypium hirsutum HOM05D004775 ORTHO05D005351 5.0e-95 351.3 199 79.4
Gohir.D01G113700 Gossypium hirsutum HOM05D004775 ORTHO05D005351 1.1e-94 350.1 199 79.4
TWI56G0975 Tripterygium wilfordii HOM05D004775 ORTHO05D005351 1.1e-94 350.1 205 79.0
Duzib116G0735 Durio zibethinus HOM05D004775 ORTHO05D005351 1.4e-94 349.7 193 82.9
Gorai.009G227600 Gossypium raimondii HOM05D004775 ORTHO05D005351 2.5e-94 349.0 197 81.7
Dinv42587 Davidia involucrata HOM05D004775 ORTHO05D005351 3.2e-94 348.6 199 79.4
Duzib041G0637 Durio zibethinus HOM05D004775 ORTHO05D005351 4.2e-94 348.2 219 75.3
MD15G1389500 Malus domestica HOM05D004775 ORTHO05D005351 1.6e-93 346.3 199 80.4
Cc10_g08310 Coffea canephora HOM05D004775 ORTHO05D005351 6.1e-93 344.4 199 79.9
TWI12G1154 Tripterygium wilfordii HOM05D004775 ORTHO05D005351 8.8e-92 340.5 193 80.3
PGR042G0432 Punica granatum HOM05D004775 ORTHO05D005351 2.6e-91 339.0 199 76.4
TWI36G1537 Tripterygium wilfordii HOM05D004775 ORTHO05D005351 4.4e-91 338.2 199 77.4
CANSAT25G1480 Cannabis sativa HOM05D004775 ORTHO05D005351 1.7e-90 336.3 195 79.0
Actinidia10268 Actinidia chinensis HOM05D004775 ORTHO05D005351 2.2e-90 335.9 200 79.5
CSS0014871 Camellia sinensis var. sinensis HOM05D004775 ORTHO05D005351 6.3e-90 334.3 201 79.1
Gohir.A06G030500 Gossypium hirsutum HOM05D004775 ORTHO05D005351 8.2e-90 334.0 198 76.8
Gorai.010G032800 Gossypium raimondii HOM05D004775 ORTHO05D005351 3.1e-89 332.0 198 76.3
Glyma.02G216500 Glycine max HOM05D004775 ORTHO05D005351 7.0e-89 330.9 200 75.0
MSTRG.932 Avicennia marina HOM05D004775 ORTHO05D005351 2.0e-88 329.3 201 73.6
MELO3C003503.2 Cucumis melo HOM05D004775 ORTHO05D005351 2.6e-88 328.9 207 76.3
MD08G1206200 Malus domestica HOM05D004775 ORTHO05D005351 2.6e-88 328.9 192 79.7
Gohir.D06G029800 Gossypium hirsutum HOM05D004775 ORTHO05D005351 3.4e-88 328.6 198 76.3
Lalb_Chr11g0064841 Lupinus albus HOM05D004775 ORTHO05D005351 3.4e-88 328.6 196 74.0
CsaV3_3G048130 Cucumis sativus L. HOM05D004775 ORTHO05D005351 4.5e-88 328.2 207 75.8
RcHm_v2.0_Chr7g0233601 Rosa chinensis HOM05D004775 ORTHO05D005351 4.5e-88 328.2 200 75.5
Nitab4.5_0018050g0020 Nicotiana tabacum HOM05D004775 ORTHO05D005351 1.7e-87 326.2 199 74.4
Peaxi162Scf00962g00039 Petunia axillaris HOM05D004775 ORTHO05D005351 1.7e-87 326.2 199 74.4
Glyma.14G183500 Glycine max HOM05D004775 ORTHO05D005351 2.9e-87 325.5 199 73.9
LjContig00408g0019215 Lotus japonicus HOM05D004775 ORTHO05D005351 3.8e-87 325.1 200 72.5
Nitab4.5_0003184g0020 Nicotiana tabacum HOM05D004775 ORTHO05D005351 5.0e-87 324.7 199 75.4
Solyc04g076670.3 Solanum lycopersicum HOM05D004775 ORTHO05D005351 2.5e-86 322.4 191 77.0
Sopen04g030390 Solanum pennellii HOM05D004775 ORTHO05D005351 2.5e-86 322.4 191 77.0
TPR.G27047 Trifolium pratense HOM05D004775 ORTHO05D005351 5.5e-86 321.2 198 72.7
FAN18G1173 Fragaria x ananassa HOM05D004775 ORTHO05D005351 1.6e-85 319.7 200 72.5
FAN08G1925 Fragaria x ananassa HOM05D004775 ORTHO05D005351 2.7e-85 318.9 200 72.0
Sed0023619 Sechium edule HOM05D004775 ORTHO05D005351 2.7e-85 318.9 204 73.0
Cpa.g.sc177.17 Carica papaya HOM05D004775 ORTHO05D005351 3.6e-85 318.5 201 75.1
MSTRG.24993 Avicennia marina HOM05D004775 ORTHO05D005351 4.7e-85 318.2 202 72.8
Sed0025083 Sechium edule HOM05D004775 ORTHO05D005351 4.7e-85 318.2 206 71.4
Sabra02G0086400 Salix brachista HOM05D004775 ORTHO05D005351 1.0e-84 317.0 272 58.8
CAN.G1104.13 Capsicum annuum HOM05D004775 ORTHO05D005351 2.3e-84 315.8 200 73.0
CAN.G723.7 Capsicum annuum HOM05D004775 ORTHO05D005351 1.1e-83 313.5 191 74.3
Lalb_Chr17g0344651 Lupinus albus HOM05D004775 ORTHO05D005351 1.1e-83 313.5 191 71.2
Ca_15537_v3 Cicer arietinum L. HOM05D000583 ORTHO05D000442 1.5e-83 313.2 195 73.3
FAN04G2969 Fragaria x ananassa HOM05D004775 ORTHO05D005351 2.6e-83 312.4 200 72.0
TAR381G0646 Trochodendron aralioides HOM05D004775 ORTHO05D005351 7.4e-83 310.8 199 71.4
Medtr5g066840 Medicago truncatula HOM05D004775 ORTHO05D005351 9.7e-83 310.5 197 70.1
arahy.Tifrunner.gnm1.ann1.ZY5S91 Arachis hypogaea HOM05D004775 ORTHO05D005351 1.3e-82 310.1 190 73.7
THA.LOC104823690 Tarenaya hassleriana HOM05D004775 ORTHO05D005351 6.3e-82 307.8 197 71.6
DCAR_020031 Daucus carota HOM05D004775 ORTHO05D005351 8.2e-82 307.4 199 70.9
Medtr3g111440 Medicago truncatula HOM05D004775 ORTHO05D005351 2.4e-81 305.8 195 71.3
Psat0s3268g0200 Pisum sativum HOM05D004775 ORTHO05D005351 7.0e-81 304.3 196 70.9
Hma1.2p1_0125F.1_g058660 Hydrangea macrophylla HOM05D004775 ORTHO05D005351 2.0e-80 302.8 189 75.7
Sc26g0003070 Simmondsia chinensis HOM05D004775 ORTHO05D005351 2.0e-80 302.8 191 70.2
Psat2g064440 Pisum sativum HOM05D004775 ORTHO05D005351 3.5e-80 302.0 201 69.2
Aqoxy6G00652 Aquilegia oxysepala HOM05D004775 ORTHO05D005351 4.5e-80 301.6 200 69.0
Solyc12g088070.2 Solanum lycopersicum HOM05D004775 ORTHO05D005351 4.5e-80 301.6 198 69.7
unitig_8.g4905 Utricularia gibba HOM05D004775 ORTHO05D005351 2.2e-79 299.3 198 71.2
THA.LOC104816787 Tarenaya hassleriana HOM05D004775 ORTHO05D005351 2.9e-79 298.9 198 68.7
Carub.0001s0930 Capsella rubella HOM05D004775 ORTHO05D005351 1.1e-78 297.0 197 70.6
Nn5g29801 Nelumbo nucifera HOM05D004775 ORTHO05D005351 1.1e-78 297.0 198 67.2
CARHR009970 Cardamine hirsuta HOM05D004775 ORTHO05D005351 1.5e-78 296.6 193 71.5
Ca_05476_v3 Cicer arietinum L. HOM05D004775 ORTHO05D005351 1.5e-78 296.6 195 69.7
Ca_30556_v3 Cicer arietinum L. HOM05D004775 ORTHO05D005351 1.5e-78 296.6 195 69.7
AL1G20520 Arabidopsis lyrata HOM05D004775 ORTHO05D005351 3.2e-78 295.4 190 72.6
PSO541G5225 Papaver somniferum HOM05D004775 ORTHO05D005351 5.5e-78 294.7 203 66.5
TPR.G12363 Trifolium pratense HOM05D004775 ORTHO05D005351 5.5e-78 294.7 197 67.0
AT1G09920 Arabidopsis thaliana HOM05D004775 ORTHO05D005351 7.2e-78 294.3 193 72.0
PSO532G0015 Papaver somniferum HOM05D004775 ORTHO05D005351 9.4e-78 293.9 203 66.0
ECA246G4228 Erigeron canadensis HOM05D004775 ORTHO05D005351 1.6e-77 293.1 200 67.0
unitig_578.g16108 Utricularia gibba HOM05D004775 ORTHO05D005351 1.6e-77 293.1 179 76.0
TAR625G1011 Trochodendron aralioides HOM05D004775 ORTHO05D005351 2.1e-77 292.7 195 69.2
Sopen12g030090 Solanum pennellii HOM05D004775 ORTHO05D005351 2.7e-77 292.4 198 68.7
PSO541G4289 Papaver somniferum HOM05D004775 ORTHO05D005351 1.8e-76 289.7 203 66.0
GSVIVG01009216001 Vitis vinifera HOM05D004775 ORTHO05D005351 1.8e-76 289.7 206 66.0
Dinv44879 Davidia involucrata HOM05D000583 ORTHO05D000442 4.0e-76 288.5 186 71.0
Oeu038164.1 Olea europaea HOM05D004775 ORTHO05D005351 6.7e-76 287.7 202 68.3
Thhalv10008829m.g Eutrema salsugineum HOM05D004775 ORTHO05D005351 2.0e-75 286.2 192 70.8
BolC5t29556H Brassica oleracea HOM05D004775 ORTHO05D005351 7.5e-75 284.3 194 67.5
vmacro21362 Vaccinium macrocarpon HOM05D004775 ORTHO05D005351 7.5e-75 284.3 273 54.6
Migut.C00072 Erythranthe guttata HOM05D004775 ORTHO05D005351 9.7e-75 283.9 204 66.7
Sp1g08560 Schrenkiella parvula HOM05D004775 ORTHO05D005351 2.8e-74 282.3 191 69.1
A08p34290 Brassica napus HOM05D004775 ORTHO05D005351 3.7e-74 282.0 188 69.1
BolC8t48959H Brassica oleracea HOM05D004775 ORTHO05D005351 4.8e-74 281.6 186 70.4
Aa31LG1G4980 Aethionema arabicum HOM05D000583 ORTHO05D000442 6.3e-74 281.2 197 66.5
BcaC07g38533 Brassica carinata HOM05D004775 ORTHO05D005351 8.2e-74 280.8 186 70.4
BcaC05g24832 Brassica carinata HOM05D004775 ORTHO05D005351 1.4e-73 280.0 195 66.7
BraA08t35340Z Brassica rapa HOM05D004775 ORTHO05D005351 2.4e-73 279.3 186 69.9
C05p08040 Brassica napus HOM05D004775 ORTHO05D005351 7.7e-72 274.2 180 70.6
C08p13270 Brassica napus HOM05D004775 ORTHO05D005351 5.0e-71 271.6 187 69.5
CAN.G1104.12 Capsicum annuum HOM05D004775 ORTHO05D005351 8.5e-71 270.8 191 63.9
Phvul.009G145000 Phaseolus vulgaris HOM05D004775 ORTHO05D005351 8.5e-71 270.8 199 65.3
ECA247G3351 Erigeron canadensis HOM05D004775 ORTHO05D005351 1.1e-70 270.4 192 64.1
A06p06630 Brassica napus HOM05D004775 ORTHO05D005351 1.9e-70 269.6 180 70.0
BraA06t23877Z Brassica rapa HOM05D004775 ORTHO05D005351 1.9e-70 269.6 180 70.0
Eucgr.F00443 Eucalyptus grandis HOM05D004775 ORTHO05D005351 9.4e-70 267.3 200 63.5
Lsat_1_v5_gn_6_107340 Lactuca sativa HOM05D004775 ORTHO05D005351 1.6e-69 266.5 178 68.5
GSVIVG01009218001 Vitis vinifera HOM05D004775 ORTHO05D005351 1.6e-69 266.5 210 62.9
Actinidia19256 Actinidia chinensis HOM05D004775 ORTHO05D005351 1.5e-67 260.0 146 80.1
ClCG11G014720 Citrullus lanatus HOM05D004775 ORTHO05D005351 3.4e-67 258.8 164 76.2
Nitab4.5_0000354g0090 Nicotiana tabacum HOM05D004775 ORTHO05D005351 4.4e-67 258.5 173 67.6
Phvul.008G183600 Phaseolus vulgaris HOM05D004775 ORTHO05D005351 1.3e-66 256.9 158 75.3
HanXRQChr02g0046001 Helianthus annuus HOM05D004775 ORTHO05D005351 2.2e-66 256.1 192 60.4
Glyma.06G092700 Glycine max HOM05D004775 ORTHO05D005351 1.8e-65 253.1 201 59.7
EL10Ac1g00475 Beta vulgaris HOM05D004775 ORTHO05D005351 6.6e-63 244.6 203 58.1
Solyc12g088060.2 Solanum lycopersicum HOM05D004775 ORTHO05D005351 5.5e-62 241.5 292 45.2
PGSC0003DMG402002053 Solanum tuberosum HOM05D004775 ORTHO05D005351 6.1e-61 238.0 198 58.6
Hma1.2p1_0010F.1_g006440 Hydrangea macrophylla HOM05D004775 ORTHO05D005351 2.3e-60 236.1 139 75.5
Lsat_1_v5_gn_1_840 Lactuca sativa HOM05D004775 ORTHO05D005351 2.3e-60 236.1 210 57.6
Nitab4.5_0000885g0090 Nicotiana tabacum HOM05D004775 ORTHO05D005351 2.3e-60 236.1 183 62.3
ATR0800G163 Amborella trichopoda HOM05D004775 ORTHO05D005351 6.3e-58 228.0 147 65.3
CDE01G0193 Ceratophyllum demersum HOM05D004775 ORTHO05D005351 4.1e-57 225.3 193 54.9
Haze_22493 Corylus avellana HOM05D004775 ORTHO05D005351 7.0e-57 224.6 189 62.4
Hund17253 Selenicereus undatus HOM05D004775 ORTHO05D005351 1.6e-56 223.4 169 63.3
VMungo1309G0719 Vigna mungo HOM05D004775 ORTHO05D005351 4.5e-56 221.9 177 59.9
Zm00001eb017320 Zea mays HOM05D004775 ORTHO05D005351 4.5e-56 221.9 206 52.4
FvH4_5g34100 Fragaria vesca HOM05D004775 ORTHO05D005351 1.7e-55 219.9 141 72.3
SEGI_14572 Sequoiadendron giganteum HOM05D004775 ORTHO05D005351 2.3e-55 219.5 200 51.5
CDE02G4408 Ceratophyllum demersum HOM05D004775 ORTHO05D005351 6.6e-55 218.0 189 54.5
MBI16_g12296_MAGBIO Magnolia biondii HOM05D004775 ORTHO05D005351 8.6e-55 217.6 154 63.6
VMungo0647G0779 Vigna mungo HOM05D004775 ORTHO05D005351 1.6e-53 213.4 135 75.6
HanXRQChr05g0163501 Helianthus annuus HOM05D004775 ORTHO05D005351 2.3e-52 209.5 154 64.9
unitig_37.g13069 Utricularia gibba HOM05D000316 ORTHO05D005351 3.1e-52 209.1 186 57.0
HanXRQChr10g0277731 Helianthus annuus HOM05D004775 ORTHO05D005351 2.0e-51 206.5 157 61.1
Os03g0356652 Oryza sativa ssp. japonica HOM05D004775 ORTHO05D005351 2.9e-50 202.6 201 49.3
Zm00001eb394470 Zea mays HOM05D004775 ORTHO05D005351 2.9e-50 202.6 197 51.3
Zm00001eb110680 Zea mays HOM05D004775 ORTHO05D005351 2.0e-48 196.4 187 49.7
Nn1g05655 Nelumbo nucifera HOM05D004775 ORTHO05D005351 8.6e-47 191.0 107 74.8
Mapoly0004s0283 Marchantia polymorpha HOM05D004775 ORTHO05D005351 1.9e-46 189.9 212 44.3
AUR62019121 Chenopodium quinoa HOM05D004775 ORTHO05D005351 8.0e-45 184.5 202 47.0
BcaB03g13545 Brassica carinata HOM05D004775 ORTHO05D005351 3.1e-44 182.6 131 66.4
Os07g0657500 Oryza sativa ssp. japonica HOM05D004775 ORTHO05D005351 5.2e-44 181.8 189 45.5
AUR62014379 Chenopodium quinoa HOM05D004775 ORTHO05D005351 4.4e-43 178.7 202 47.0
Manes.12G122400 Manihot esculenta HOM05D004775 ORTHO05D005351 1.1e-41 174.1 196 42.3
BcaC07g41856 Brassica carinata HOM05D004775 ORTHO05D005351 7.8e-40 167.9 196 47.4
BolC8t52458H Brassica oleracea HOM05D000348 ORTHO05D000244 7.8e-40 167.9 196 47.4
BraA09t41874Z Brassica rapa HOM05D000348 ORTHO05D000244 8.6e-39 164.5 187 46.5
Sopen12g030080 Solanum pennellii HOM05D000583 ORTHO05D000442 1.9e-38 163.3 147 55.8
SGA_v2.0_scaffold74G24544 Striga asiatica HOM05D004775 ORTHO05D005351 3.3e-30 136.0 209 40.2
MBI05_g43456_MAGBIO Magnolia biondii HOM05D004775 ORTHO05D005351 5.2e-28 128.6 87 65.5
MBI10_g33158_MAGBIO Magnolia biondii HOM05D004775 ORTHO05D005351 6.4e-26 121.7 90 61.1
Dinv36973 Davidia involucrata HOM05D004775 ORTHO05D005351 6.4e-18 95.1 149 38.9
vmacro22764 Vaccinium macrocarpon HOM05D004775 ORTHO05D005351 2.1e-16 90.1 74 59.5
Atru.chr6.3231 Acer truncatum HOM05D006348 ORTHO05D008261 5.1e-15 85.5 157 30.6
Aqoxy1G03030 Aquilegia oxysepala HOM05D006348 ORTHO05D008261 1.1e-14 84.3 158 30.4
CARHR222170 Cardamine hirsuta HOM05D006348 ORTHO05D008261 1.1e-14 84.3 165 29.7
ClCG02G002100 Citrullus lanatus HOM05D006348 ORTHO05D008261 1.1e-14 84.3 158 30.4
AT4G15420 Arabidopsis thaliana HOM05D006348 ORTHO05D008261 1.9e-14 83.6 165 29.1
AL7G40130 Arabidopsis lyrata HOM05D006348 ORTHO05D008261 5.6e-14 82.0 165 29.1
MELO3C018834.2 Cucumis melo HOM05D006348 ORTHO05D008261 5.6e-14 82.0 163 28.2
EL10Ac5g11991 Beta vulgaris HOM05D006348 ORTHO05D008261 9.6e-14 81.3 163 28.8
Oeu036738.2 Olea europaea HOM05D006348 ORTHO05D008261 2.8e-13 79.7 156 30.8
ATR0681G302 Amborella trichopoda HOM05D006348 ORTHO05D008261 3.6e-13 79.3 157 29.9
Dinv08741 Davidia involucrata HOM05D006348 ORTHO05D008261 3.6e-13 79.3 157 30.6
SGA_v2.0_scaffold159G37573 Striga asiatica HOM05D006348 ORTHO05D008261 1.1e-12 77.8 158 29.7
Glyma.04G091000 Glycine max HOM05D004775 ORTHO05D005351 1.4e-12 77.4 56 69.6
CDE09G1141 Ceratophyllum demersum HOM05D006348 ORTHO05D008261 5.3e-12 75.5 158 29.7
CDE07G0871 Ceratophyllum demersum HOM05D004775 ORTHO05D005351 2.6e-11 73.2 49 55.1
Pp3c3_2100 Physcomitrium patens HOM05D006348 ORTHO05D008261 4.5e-11 72.4 158 27.8
Medtr3g099560 Medicago truncatula HOM05D004775 ORTHO05D005351 1.3e-10 70.9 39 79.5
PGSC0003DMG400006141 Solanum tuberosum HOM05D006348 ORTHO05D008261 2.2e-10 70.1 163 27.0
Nn1g03434 Nelumbo nucifera HOM05D006348 ORTHO05D008261 2.9e-10 69.7 157 28.7
Zm00001eb329620 Zea mays HOM05D004775 ORTHO05D005351 2.3e-07 60.1 110 32.7


User provided reference genes

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