Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr13.1788 Acer truncatum HOM05D007304 ORTHO05D009233 9.3e-124 446.8 216 100.0
Atru.chr13.1792 Acer truncatum HOM05D007304 ORTHO05D009233 9.3e-124 446.8 216 100.0
Ciclev10002467m.g Citrus clementina HOM05D007304 ORTHO05D009233 2.0e-89 332.8 216 75.9
Cfa018186 Carpinus fangiana HOM05D007304 ORTHO05D009233 1.2e-86 323.6 217 71.4
QL02p033889 Quercus lobata HOM05D007304 ORTHO05D009233 1.6e-86 323.2 217 72.4
Thecc.08G182300 Theobroma cacao HOM05D007304 ORTHO05D009233 2.5e-84 315.8 216 71.3
Manes.02G191500 Manihot esculenta HOM05D007304 ORTHO05D009233 6.1e-83 311.2 217 68.2
Duzib177G0769 Durio zibethinus HOM05D007304 ORTHO05D009233 8.0e-83 310.8 216 69.0
CiPaw.16G062000 Carya illinoinensis HOM05D007304 ORTHO05D009233 4.0e-82 308.5 217 67.3
Haze_17932 Corylus avellana HOM05D007304 ORTHO05D009233 9.8e-81 303.9 210 69.0
GSVIVG01034475001 Vitis vinifera HOM05D007304 ORTHO05D009233 3.1e-79 298.9 217 65.4
COL.COLO4_22675 Corchorus olitorius HOM05D007304 ORTHO05D009233 1.2e-78 297.0 208 67.3
Sed0026932 Sechium edule HOM05D007304 ORTHO05D009233 7.7e-78 294.3 217 62.7
CSS0049262 Camellia sinensis var. sinensis HOM05D007304 ORTHO05D009233 1.0e-77 293.9 217 64.1
RhsimUnG0069500 Rhododendron simsii HOM05D007304 ORTHO05D009233 5.6e-76 288.1 217 64.5
Rhsim11G0060100 Rhododendron simsii HOM05D007304 ORTHO05D009233 7.3e-76 287.7 217 65.0
Potri.013G113500 Populus trichocarpa HOM05D007304 ORTHO05D009233 2.1e-75 286.2 218 63.8
Gorai.005G074700 Gossypium raimondii HOM05D007304 ORTHO05D009233 4.7e-75 285.0 216 66.2
TWI32G0836 Tripterygium wilfordii HOM05D007304 ORTHO05D009233 1.8e-74 283.1 193 70.5
Peaxi162Scf00310g00614 Petunia axillaris HOM05D007304 ORTHO05D009233 2.3e-74 282.7 218 63.8
MELO3C008119.2 Cucumis melo HOM05D007304 ORTHO05D009233 4.0e-74 282.0 217 61.3
ClCG11G008190 Citrullus lanatus HOM05D007304 ORTHO05D009233 8.9e-74 280.8 217 61.3
MSTRG.22445 Avicennia marina HOM05D007304 ORTHO05D009233 2.0e-73 279.6 216 59.7
TPR.G8829 Trifolium pratense HOM05D007304 ORTHO05D009233 2.6e-73 279.3 217 62.2
CsaV3_2G033470 Cucumis sativus L. HOM05D007304 ORTHO05D009233 3.4e-73 278.9 217 60.8
Gohir.A02G060400 Gossypium hirsutum HOM05D007304 ORTHO05D009233 4.4e-73 278.5 216 63.9
Nitab4.5_0000560g0190 Nicotiana tabacum HOM05D007304 ORTHO05D009233 7.5e-73 277.7 219 63.9
Sopen11g009380 Solanum pennellii HOM05D007304 ORTHO05D009233 7.5e-73 277.7 218 62.4
CAN.G1530.5 Capsicum annuum HOM05D007304 ORTHO05D009233 2.2e-72 276.2 216 61.1
Lalb_Chr06g0162071 Lupinus albus HOM05D007304 ORTHO05D009233 2.2e-72 276.2 217 60.4
Lj5g0021067 Lotus japonicus HOM05D007304 ORTHO05D009233 2.9e-72 275.8 219 60.7
Dinv41708 Davidia involucrata HOM05D007304 ORTHO05D009233 8.3e-72 274.2 204 65.2
PGSC0003DMG400009226 Solanum tuberosum HOM05D007304 ORTHO05D009233 8.3e-72 274.2 218 61.9
SalBow6G2896 Salvia bowleyana HOM05D007304 ORTHO05D009233 1.1e-71 273.9 217 60.4
Cc10_g11390 Coffea canephora HOM05D007304 ORTHO05D009233 3.2e-71 272.3 193 63.2
Nitab4.5_0000422g0040 Nicotiana tabacum HOM05D007304 ORTHO05D009233 4.1e-71 271.9 219 63.0
TAR376G0332 Trochodendron aralioides HOM05D007304 ORTHO05D009233 5.4e-71 271.6 222 61.7
Phvul.007G089900 Phaseolus vulgaris HOM05D007304 ORTHO05D009233 2.7e-70 269.2 217 59.9
PGR102G2268 Punica granatum HOM05D007304 ORTHO05D009233 4.6e-70 268.5 223 59.2
RcHm_v2.0_Chr7g0219041 Rosa chinensis HOM05D007304 ORTHO05D009233 5.9e-70 268.1 217 60.8
Ca_10612_v3 Cicer arietinum L. HOM05D007304 ORTHO05D009233 7.8e-70 267.7 217 60.4
Glyma.20G175900 Glycine max HOM05D007304 ORTHO05D009233 1.3e-69 266.9 217 59.0
Gohir.D02G065833 Gossypium hirsutum HOM05D007304 ORTHO05D009233 1.7e-69 266.5 215 62.3
Actinidia29417 Actinidia chinensis HOM05D004490 ORTHO05D005353 3.9e-69 265.4 202 62.9
Migut.N03345 Erythranthe guttata HOM05D007304 ORTHO05D009233 3.9e-69 265.4 216 58.8
FvH4_5g27630 Fragaria vesca HOM05D007304 ORTHO05D009233 1.1e-68 263.8 217 59.0
FAN04G0833 Fragaria x ananassa HOM05D007304 ORTHO05D009233 1.1e-68 263.8 217 59.0
FAN13G2406 Fragaria x ananassa HOM05D007304 ORTHO05D009233 1.5e-68 263.5 217 59.0
Medtr1g096340 Medicago truncatula HOM05D007304 ORTHO05D009233 1.5e-68 263.5 217 58.5
Nn5g27732 Nelumbo nucifera HOM05D007304 ORTHO05D009233 2.5e-68 262.7 214 59.8
AUR62004650 Chenopodium quinoa HOM05D007304 ORTHO05D009233 4.3e-68 261.9 217 59.0
SGA_v2.0_scaffold149G36602 Striga asiatica HOM05D007304 ORTHO05D009233 5.6e-68 261.5 216 59.3
EL10Ac8g20249 Beta vulgaris HOM05D007304 ORTHO05D009233 9.5e-68 260.8 218 59.2
Oeu039601.1 Olea europaea HOM05D007304 ORTHO05D009233 2.1e-67 259.6 216 58.3
VMungo0720G1999 Vigna mungo HOM05D007304 ORTHO05D009233 2.1e-67 259.6 217 57.1
Hund27084 Selenicereus undatus HOM05D007304 ORTHO05D009233 2.8e-67 259.2 218 58.3
Sabra13G0096200 Salix brachista HOM05D007304 ORTHO05D009233 3.6e-67 258.8 190 63.7
arahy.Tifrunner.gnm1.ann1.W17VPE Arachis hypogaea HOM05D007304 ORTHO05D009233 8.0e-67 257.7 217 59.0
AUR62023569 Chenopodium quinoa HOM05D007304 ORTHO05D009233 1.0e-66 257.3 158 72.2
Psat6g187320 Pisum sativum HOM05D007304 ORTHO05D009233 1.0e-66 257.3 219 58.4
Aqoxy5G02599 Aquilegia oxysepala HOM05D007304 ORTHO05D009233 1.4e-66 256.9 221 57.9
arahy.Tifrunner.gnm1.ann1.E78XAF Arachis hypogaea HOM05D007304 ORTHO05D009233 1.4e-66 256.9 217 58.5
DCAR_011537 Daucus carota HOM05D007304 ORTHO05D009233 3.1e-66 255.8 167 64.7
THA.LOC104816302 Tarenaya hassleriana HOM05D007304 ORTHO05D009233 3.1e-66 255.8 217 58.5
CANSAT25G3778 Cannabis sativa HOM05D007304 ORTHO05D009233 6.8e-66 254.6 221 57.5
PSO063G3154 Papaver somniferum HOM05D007304 ORTHO05D009233 3.4e-65 252.3 218 56.9
Lj4P501T9 Lonicera japonica HOM05D007304 ORTHO05D009233 7.5e-65 251.1 171 66.7
MD05G1041300 Malus domestica HOM05D007304 ORTHO05D009233 9.8e-65 250.8 194 62.9
PSO017G3329 Papaver somniferum HOM05D007304 ORTHO05D009233 2.9e-64 249.2 218 56.9
Ah.07g202740 Amaranthus hybridus HOM05D007304 ORTHO05D009233 2.4e-63 246.1 158 69.0
ECA246G3843 Erigeron canadensis HOM05D007304 ORTHO05D009233 2.0e-62 243.0 217 57.1
AL6G43210 Arabidopsis lyrata HOM05D007304 ORTHO05D009233 1.3e-61 240.4 218 56.0
MBI17_g27205_MAGBIO Magnolia biondii HOM05D007304 ORTHO05D009233 8.6e-61 237.7 223 55.2
Carub.0006s2806 Capsella rubella HOM05D007304 ORTHO05D009233 1.5e-60 236.9 218 54.6
Sp6g07990 Schrenkiella parvula HOM05D007304 ORTHO05D009233 1.5e-60 236.9 219 56.2
CARHR260470 Cardamine hirsuta HOM05D007304 ORTHO05D009233 3.3e-60 235.7 220 55.9
AT4G09620 Arabidopsis thaliana HOM05D007304 ORTHO05D009233 4.3e-60 235.3 218 55.0
HanXRQChr05g0150521 Helianthus annuus HOM05D007304 ORTHO05D009233 4.3e-60 235.3 216 53.7
BraA03t12064Z Brassica rapa HOM05D007304 ORTHO05D009233 4.7e-59 231.9 219 55.3
A03p28640 Brassica napus HOM05D007304 ORTHO05D009233 6.2e-59 231.5 219 55.3
C03p34620 Brassica napus HOM05D007304 ORTHO05D009233 1.4e-58 230.3 218 55.5
BolC3t15773H Brassica oleracea HOM05D007304 ORTHO05D009233 1.4e-58 230.3 218 55.5
BcaC01g04711 Brassica carinata HOM05D007304 ORTHO05D009233 1.8e-58 229.9 217 53.9
Lsat_1_v5_gn_6_109640 Lactuca sativa HOM05D007304 ORTHO05D009233 1.8e-58 229.9 214 53.3
Thhalv10028979m.g Eutrema salsugineum HOM05D007304 ORTHO05D009233 5.2e-58 228.4 159 63.5
Sc26g0000380 Simmondsia chinensis HOM05D007304 ORTHO05D009233 2.4e-55 219.5 199 50.3
Aa31LG9G14900 Aethionema arabicum HOM05D007304 ORTHO05D009233 2.1e-54 216.5 217 50.2
SEGI_32747 Sequoiadendron giganteum HOM05D007304 ORTHO05D009233 1.3e-53 213.8 172 59.3
HPP92_003142 Vanilla planifolia HOM05D007304 ORTHO05D009233 4.3e-52 208.8 146 63.7
Eucgr.F04126 Eucalyptus grandis HOM05D007304 ORTHO05D009233 2.8e-51 206.1 198 53.5
Zm00001eb063940 Zea mays HOM05D007304 ORTHO05D009233 3.8e-48 195.7 222 47.7
Os03g0838900 Oryza sativa ssp. japonica HOM05D007304 ORTHO05D009233 1.1e-47 194.1 219 44.7
Cpa.g.sc66.48 Carica papaya HOM05D007304 ORTHO05D009233 1.7e-45 186.8 162 54.9
unitig_21.g20192 Utricularia gibba HOM05D007304 ORTHO05D009233 5.8e-41 171.8 149 52.3
SMO200G0124 Selaginella moellendorffii HOM05D007304 ORTHO05D009233 3.8e-40 169.1 134 50.7
Mapoly0175s0009 Marchantia polymorpha HOM05D007304 ORTHO05D009233 1.6e-38 163.7 143 49.0
BcaB01g02784 Brassica carinata HOM05D007304 ORTHO05D009233 1.5e-36 157.1 179 47.5
AagrBONN_evm.TU.Sc2ySwM_117.12 Anthoceros agrestis HOM05D007304 ORTHO05D009233 1.2e-33 147.5 152 44.1
SalBow6G1917 Salvia bowleyana HOM05D007304 ORTHO05D009233 4.5e-33 145.6 139 54.0
Prupe.8G057100 Prunus persica HOM05D007304 ORTHO05D009233 2.2e-32 143.3 147 50.3
Pp3c24_12240 Physcomitrium patens HOM05D007304 ORTHO05D009233 1.2e-30 137.5 136 46.3
CDE02G2755 Ceratophyllum demersum HOM05D000288 ORTHO05D000173 3.1e-26 122.9 82 67.1
Cre10.g445100 Chlamydomonas reinhardtii HOM05D007304 ORTHO05D009233 9.9e-25 117.9 145 37.9
MCO03G180 Micromonas commoda HOM05D007304 ORTHO05D009233 1.5e-20 104.0 148 38.5
Solyc11g017430.3 Solanum lycopersicum HOM05D007304 ORTHO05D009233 9.6e-20 101.3 52 80.8
MBI11_g39361_MAGBIO Magnolia biondii HOM05D007304 ORTHO05D009233 1.1e-15 87.8 54 75.9
MD10G1047700 Malus domestica HOM05D007304 ORTHO05D009233 3.7e-11 72.8 44 70.5
Zm00001eb272990 Zea mays HOM05D007304 ORTHO05D009233 1.4e-07 60.8 125 34.4


User provided reference genes

Program Settings