Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr13.1337 Acer truncatum HOM05D004729 ORTHO05D005451 6.5e-210 733.8 369 100.0
Atru.chr13.1380 Acer truncatum HOM05D004729 ORTHO05D005451 6.5e-210 733.8 369 100.0
Ciclev10001583m.g Citrus clementina HOM05D004729 ORTHO05D005451 2.5e-129 466.1 306 75.5
Prupe.1G503900 Prunus persica HOM05D004729 ORTHO05D005451 1.6e-123 446.8 295 73.2
MD08G1169900 Malus domestica HOM05D004729 ORTHO05D005451 2.1e-123 446.4 293 70.6
MD15G1356700 Malus domestica HOM05D004729 ORTHO05D005451 4.3e-121 438.7 293 71.0
FAN15G1542 Fragaria x ananassa HOM05D004729 ORTHO05D005451 7.4e-121 438.0 290 72.4
FAN27G3155 Fragaria x ananassa HOM05D004729 ORTHO05D005451 4.8e-120 435.3 301 69.8
RcHm_v2.0_Chr6g0294871 Rosa chinensis HOM05D004729 ORTHO05D005451 4.8e-120 435.3 307 67.8
FvH4_2g26260 Fragaria vesca HOM05D004729 ORTHO05D005451 9.1e-119 431.0 307 68.1
FAN24G1570 Fragaria x ananassa HOM05D004729 ORTHO05D005451 9.1e-119 431.0 290 71.0
Duzib093G1993 Durio zibethinus HOM05D004729 ORTHO05D005451 2.0e-118 429.9 312 66.7
QL09p035890 Quercus lobata HOM05D004729 ORTHO05D005451 1.3e-117 427.2 310 69.7
TWI56G0049 Tripterygium wilfordii HOM05D004729 ORTHO05D005451 5.0e-117 425.2 296 70.9
THA.LOC104817066 Tarenaya hassleriana HOM05D004729 ORTHO05D005451 1.1e-116 424.1 304 67.8
Potri.002G087700 Populus trichocarpa HOM05D004729 ORTHO05D005451 1.9e-116 423.3 313 69.6
Manes.02G159900 Manihot esculenta HOM05D004729 ORTHO05D005451 3.2e-116 422.5 313 68.4
Aa31LG7G12040 Aethionema arabicum HOM05D004729 ORTHO05D005451 5.5e-116 421.8 302 66.9
Thecc.08G118600 Theobroma cacao HOM05D004729 ORTHO05D005451 1.2e-115 420.6 312 66.3
GSVIVG01008929001 Vitis vinifera HOM05D004729 ORTHO05D005451 1.2e-115 420.6 275 73.5
Eucgr.F03750 Eucalyptus grandis HOM05D004729 ORTHO05D005451 3.6e-115 419.1 311 67.2
CiPaw.05G227200 Carya illinoinensis HOM05D004729 ORTHO05D005451 4.7e-115 418.7 310 66.5
Lalb_Chr23g0270821 Lupinus albus HOM05D004729 ORTHO05D005451 7.9e-115 417.9 272 72.1
Dinv07919 Davidia involucrata HOM05D004729 ORTHO05D005451 1.0e-114 417.5 323 64.4
TAR151G0002 Trochodendron aralioides HOM05D004729 ORTHO05D005451 1.4e-114 417.2 269 72.1
TAR628G0451 Trochodendron aralioides HOM05D004729 ORTHO05D005451 2.3e-114 416.4 311 67.8
Duzib116G0142 Durio zibethinus HOM05D004729 ORTHO05D005451 1.5e-113 413.7 270 72.6
Cpa.g.sc36.9 Carica papaya HOM05D004729 ORTHO05D005451 1.7e-112 410.2 269 72.5
Psat5g133600 Pisum sativum HOM05D004729 ORTHO05D005451 8.2e-112 407.9 264 73.9
Medtr3g073010 Medicago truncatula HOM05D004729 ORTHO05D005451 1.1e-111 407.5 276 72.5
VMungo1309G0261 Vigna mungo HOM05D004729 ORTHO05D005451 1.4e-111 407.1 278 70.9
Actinidia23053 Actinidia chinensis HOM05D004729 ORTHO05D005451 2.4e-111 406.4 318 64.2
Thhalv10027838m.g Eutrema salsugineum HOM05D004729 ORTHO05D005451 2.4e-111 406.4 270 68.9
Gohir.D05G234700 Gossypium hirsutum HOM05D004729 ORTHO05D005451 2.4e-111 406.4 285 68.4
Gorai.009G243000 Gossypium raimondii HOM05D004729 ORTHO05D005451 2.4e-111 406.4 285 68.1
AT2G25710 Arabidopsis thaliana HOM05D004729 ORTHO05D005451 4.1e-111 405.6 295 66.1
Haze_00501 Corylus avellana HOM05D004729 ORTHO05D005451 4.1e-111 405.6 327 62.1
Lj4C592G4 Lonicera japonica HOM05D004729 ORTHO05D005451 4.1e-111 405.6 307 63.5
Sp1g31520 Schrenkiella parvula HOM05D004729 ORTHO05D005451 7.0e-111 404.8 288 66.3
Lj1g0017363 Lotus japonicus HOM05D004729 ORTHO05D005451 9.1e-111 404.4 263 74.1
Glyma.04G252900 Glycine max HOM05D004729 ORTHO05D005451 1.2e-110 404.1 292 67.8
Phvul.009G121400 Phaseolus vulgaris HOM05D004729 ORTHO05D005451 1.2e-110 404.1 278 70.5
arahy.Tifrunner.gnm1.ann1.CLQ5CM Arachis hypogaea HOM05D004729 ORTHO05D005451 2.0e-110 403.3 262 72.1
CsaV3_3G023700 Cucumis sativus L. HOM05D004729 ORTHO05D005451 2.6e-110 402.9 282 66.0
Potri.005G173000 Populus trichocarpa HOM05D004729 ORTHO05D005451 3.5e-110 402.5 272 71.3
MELO3C012993.2 Cucumis melo HOM05D004729 ORTHO05D005451 4.5e-110 402.1 298 64.8
BcaB05g24351 Brassica carinata HOM05D004729 ORTHO05D005451 5.9e-110 401.7 295 65.4
AL1G51210 Arabidopsis lyrata HOM05D004729 ORTHO05D005451 1.3e-109 400.6 271 68.6
arahy.Tifrunner.gnm1.ann1.J2YLH9 Arachis hypogaea HOM05D004729 ORTHO05D005451 1.7e-109 400.2 262 71.4
Gohir.A05G236400 Gossypium hirsutum HOM05D004729 ORTHO05D005451 1.7e-109 400.2 285 67.4
PGR042G2886 Punica granatum HOM05D004729 ORTHO05D005451 2.9e-109 399.4 291 68.0
CSS0005799 Camellia sinensis var. sinensis HOM05D004729 ORTHO05D005451 6.5e-109 398.3 276 68.8
AL4G17320 Arabidopsis lyrata HOM05D004729 ORTHO05D005451 1.4e-108 397.1 270 69.3
Glyma.06G109600 Glycine max HOM05D004729 ORTHO05D005451 3.2e-108 396.0 292 67.1
BraA02t06545Z Brassica rapa HOM05D004729 ORTHO05D005451 4.2e-108 395.6 312 64.4
CANSAT78G0882 Cannabis sativa HOM05D004729 ORTHO05D005451 4.2e-108 395.6 292 64.0
Carub.0004s0549 Capsella rubella HOM05D004729 ORTHO05D005451 5.5e-108 395.2 273 68.9
Hma1.2p1_0542F.1_g174920 Hydrangea macrophylla HOM05D004729 ORTHO05D005451 1.6e-107 393.7 264 69.7
MBI06_g01065_MAGBIO Magnolia biondii HOM05D004729 ORTHO05D005451 1.6e-107 393.7 298 66.1
A02p14780 Brassica napus HOM05D004729 ORTHO05D005451 2.1e-107 393.3 290 66.9
CSS0018062 Camellia sinensis var. sinensis HOM05D004729 ORTHO05D005451 2.1e-107 393.3 279 67.7
Carub.0004s0560 Capsella rubella HOM05D004729 ORTHO05D005451 2.1e-107 393.3 271 67.5
SGA_v2.0_scaffold52G19009 Striga asiatica HOM05D004729 ORTHO05D005451 2.1e-107 393.3 306 64.4
SalBow7G0963 Salvia bowleyana HOM05D004729 ORTHO05D005451 2.7e-107 392.9 269 68.8
DCAR_024544 Daucus carota HOM05D004729 ORTHO05D005451 4.7e-107 392.1 269 69.5
Sc23g0000860 Simmondsia chinensis HOM05D004729 ORTHO05D005451 8.0e-107 391.3 262 70.6
C02p24210 Brassica napus HOM05D004729 ORTHO05D005451 1.0e-106 391.0 282 67.0
CARHR115540 Cardamine hirsuta HOM05D004729 ORTHO05D005451 1.4e-106 390.6 272 67.3
AT1G37150 Arabidopsis thaliana HOM05D004729 ORTHO05D005451 1.8e-106 390.2 271 67.9
BcaC03g14925 Brassica carinata HOM05D004729 ORTHO05D005451 2.3e-106 389.8 282 67.0
BolC2t08529H Brassica oleracea HOM05D004729 ORTHO05D005451 2.3e-106 389.8 282 67.0
Nn1g08655 Nelumbo nucifera HOM05D004729 ORTHO05D005451 1.5e-105 387.1 285 63.5
COL.COLO4_38234 Corchorus olitorius HOM05D004729 ORTHO05D005451 7.4e-105 384.8 252 70.2
DCAR_024606 Daucus carota HOM05D004729 ORTHO05D005451 1.3e-104 384.0 269 68.0
Cc10_g10550 Coffea canephora HOM05D004729 ORTHO05D005451 2.2e-104 383.3 270 69.3
C09p08700 Brassica napus HOM05D004729 ORTHO05D005451 2.8e-104 382.9 273 64.5
Oeu032968.2 Olea europaea HOM05D004729 ORTHO05D005451 2.8e-104 382.9 268 66.8
Migut.C01178 Erythranthe guttata HOM05D004729 ORTHO05D005451 3.1e-103 379.4 281 65.1
SGA_v2.0_scaffold24G10496 Striga asiatica HOM05D004729 ORTHO05D005451 3.1e-103 379.4 272 67.3
MSTRG.25403 Avicennia marina HOM05D004729 ORTHO05D005451 5.3e-103 378.6 304 63.2
BolC9t53782H Brassica oleracea HOM05D004729 ORTHO05D005451 5.3e-103 378.6 277 62.8
Hund27047 Selenicereus undatus HOM05D004729 ORTHO05D005451 7.0e-103 378.3 296 63.2
TPR.G22343 Trifolium pratense HOM05D004729 ORTHO05D005451 9.1e-103 377.9 259 71.4
PSO528G0069 Papaver somniferum HOM05D004729 ORTHO05D005451 1.3e-101 374.0 312 62.2
PSO170G2478 Papaver somniferum HOM05D004729 ORTHO05D005451 2.2e-101 373.2 307 62.2
BcaC04g23401 Brassica carinata HOM05D004729 ORTHO05D005451 3.8e-101 372.5 269 63.2
ATR0684G041 Amborella trichopoda HOM05D004729 ORTHO05D005451 1.8e-98 363.6 266 65.4
HanXRQChr06g0181001 Helianthus annuus HOM05D004729 ORTHO05D005451 1.8e-98 363.6 278 64.7
Lsat_1_v5_gn_8_107920 Lactuca sativa HOM05D004729 ORTHO05D005451 2.3e-98 363.2 277 62.8
Aqoxy1G01637 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 1.3e-96 357.5 271 64.9
ECA236G4997 Erigeron canadensis HOM05D004729 ORTHO05D005451 1.3e-96 357.5 269 64.7
Oeu017724.4 Olea europaea HOM05D004729 ORTHO05D005451 1.3e-96 357.5 253 66.0
BcaNung01386 Brassica carinata HOM05D004729 ORTHO05D005451 3.7e-96 355.9 255 63.5
Aqoxy5G04147 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 1.4e-95 354.0 271 64.2
Sed0026543 Sechium edule HOM05D004729 ORTHO05D005451 9.1e-95 351.3 333 53.8
Ah.05g172360 Amaranthus hybridus HOM05D004729 ORTHO05D005451 7.7e-94 348.2 261 63.6
Solyc11g013200.2 Solanum lycopersicum HOM05D004729 ORTHO05D005451 1.3e-93 347.4 311 58.8
Sopen11g008240 Solanum pennellii HOM05D004729 ORTHO05D005451 1.7e-93 347.1 311 58.8
AUR62023623 Chenopodium quinoa HOM05D004729 ORTHO05D005451 8.5e-93 344.7 234 68.4
ClCG11G010630 Citrullus lanatus HOM05D004729 ORTHO05D005451 1.5e-92 344.0 322 54.3
CDE08G0072 Ceratophyllum demersum HOM05D004729 ORTHO05D005451 1.9e-92 343.6 265 61.1
Nitab4.5_0000494g0050 Nicotiana tabacum HOM05D004729 ORTHO05D005451 2.1e-91 340.1 269 63.6
CAN.G321.55 Capsicum annuum HOM05D004729 ORTHO05D005451 2.7e-91 339.7 300 59.0
EL10Ac1g00023 Beta vulgaris HOM05D004729 ORTHO05D005451 6.1e-91 338.6 264 61.7
Lsat_1_v5_gn_3_63181 Lactuca sativa HOM05D004729 ORTHO05D005451 1.0e-90 337.8 278 58.3
HPP92_002257 Vanilla planifolia HOM05D004729 ORTHO05D005451 3.4e-89 332.8 311 55.9
CAN.G630.60 Capsicum annuum HOM05D004729 ORTHO05D005451 1.3e-88 330.9 262 63.7
Peaxi162Scf00679g00006 Petunia axillaris HOM05D004729 ORTHO05D005451 3.7e-88 329.3 262 62.2
FAN18G3003 Fragaria x ananassa HOM05D004729 ORTHO05D005451 8.3e-88 328.2 270 60.7
SHI32261 Sapria himalayana HOM05D004729 ORTHO05D005451 1.8e-87 327.0 245 65.7
unitig_46.g18427 Utricularia gibba HOM05D004729 ORTHO05D005451 1.2e-86 324.3 274 59.9
Os02g0167000 Oryza sativa ssp. japonica HOM05D004729 ORTHO05D005451 8.0e-83 311.6 280 54.6
Nitab4.5_0000193g0110 Nicotiana tabacum HOM05D004729 ORTHO05D005451 1.0e-82 311.2 262 61.1
Zm00001eb232860 Zea mays HOM05D004729 ORTHO05D005451 2.6e-81 306.6 281 54.4
AUR62029101 Chenopodium quinoa HOM05D004729 ORTHO05D005451 1.3e-80 304.3 275 58.2
Peaxi162Scf00412g00069 Petunia axillaris HOM05D004729 ORTHO05D005451 1.8e-79 300.4 251 59.4
Thhalv10004827m.g Eutrema salsugineum HOM05D004729 ORTHO05D005451 1.9e-76 290.4 180 72.2
SalBow7G1557 Salvia bowleyana HOM05D004729 ORTHO05D005451 1.5e-73 280.8 194 67.5
Pp3c9_4090 Physcomitrium patens HOM05D004729 ORTHO05D005451 9.8e-73 278.1 275 50.2
CSS0041333 Camellia sinensis var. sinensis HOM05D004729 ORTHO05D005451 6.0e-70 268.9 208 63.0
Mapoly0100s0036 Marchantia polymorpha HOM05D004729 ORTHO05D005451 1.6e-67 260.8 265 47.2
AagrBONN_evm.TU.Sc2ySwM_117.2782 Anthoceros agrestis HOM05D004729 ORTHO05D005451 3.6e-67 259.6 236 51.7
FvH4_5g31361 Fragaria vesca HOM05D004729 ORTHO05D005451 3.3e-60 236.5 139 78.4
Lj3g0025484 Lotus japonicus HOM05D004729 ORTHO05D005451 2.1e-59 233.8 139 79.9
Aa31LG6G9140 Aethionema arabicum HOM05D004729 ORTHO05D005451 1.1e-58 231.5 146 73.3
Nn1g08666 Nelumbo nucifera HOM05D004729 ORTHO05D005451 1.1e-55 221.5 175 62.3
Nn5g28096 Nelumbo nucifera HOM05D004729 ORTHO05D005451 2.4e-55 220.3 141 70.9
arahy.Tifrunner.gnm1.ann1.XVDB66 Arachis hypogaea HOM05D004729 ORTHO05D005451 4.1e-55 219.5 139 72.7
Manes.18G073729 Manihot esculenta HOM05D004729 ORTHO05D005451 2.7e-54 216.9 203 58.6
CBR_g4408 Chara braunii HOM05D004729 ORTHO05D005451 8.6e-53 211.8 243 43.2
Rhsim11G0066000 Rhododendron simsii HOM05D004729 ORTHO05D005451 1.1e-52 211.5 185 58.4
SMO356G0070 Selaginella moellendorffii HOM05D004729 ORTHO05D005451 3.6e-51 206.5 182 51.1
PRCOL_00005327 Prasinoderma coloniale HOM05D004729 ORTHO05D005451 1.2e-38 164.9 222 40.1
MCO05G148 Micromonas commoda HOM05D004729 ORTHO05D005451 2.1e-38 164.1 198 43.4
SEGI_02892 Sequoiadendron giganteum HOM05D004729 ORTHO05D005451 6.0e-38 162.5 183 46.4
FvH4_5g31362 Fragaria vesca HOM05D004729 ORTHO05D005451 2.4e-34 150.6 125 56.8
SEGI_13253 Sequoiadendron giganteum HOM05D004729 ORTHO05D005451 1.5e-33 147.9 108 62.0
Cre09.g406000 Chlamydomonas reinhardtii HOM05D004729 ORTHO05D005451 3.4e-33 146.7 219 37.9
BraA09t36427Z Brassica rapa HOM05D004729 ORTHO05D005451 1.8e-29 134.4 111 55.9
A09p07790 Brassica napus HOM05D004729 ORTHO05D005451 2.3e-29 134.0 113 55.8
Cfa026220 Carpinus fangiana HOM05D004729 ORTHO05D005451 3.7e-27 126.7 229 35.8
arahy.Tifrunner.gnm1.ann1.M1Z3QL Arachis hypogaea HOM05D004729 ORTHO05D005451 2.9e-24 117.1 120 48.3
Lalb_Chr11g0065751 Lupinus albus HOM05D004729 ORTHO05D005451 2.1e-22 110.9 181 37.6
Hma1.2p1_0009F.1_g006083 Hydrangea macrophylla HOM05D004729 ORTHO05D005451 6.7e-21 105.9 90 55.6
Hma1.2p1_0009F.1_g006090 Hydrangea macrophylla HOM05D004729 ORTHO05D005451 6.7e-21 105.9 90 55.6
Haze_27035 Corylus avellana HOM05D000050 ORTHO05D005451 2.8e-19 100.5 230 30.0
Aqoxy5G04170 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 5.0e-16 89.7 112 48.2
Aqoxy356s001 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 3.2e-15 87.0 70 60.0
arahy.Tifrunner.gnm1.ann1.7BX7P6 Arachis hypogaea HOM05D004729 ORTHO05D009789 2.8e-11 73.9 58 55.2
Nn1g08661 Nelumbo nucifera HOM05D004729 ORTHO05D005451 2.2e-08 64.3 51 51.0


User provided reference genes

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