Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr13.103 Acer truncatum HOM05D005561 ORTHO05D006834 3.3e-129 464.9 218 100.0
Manes.05G124800 Manihot esculenta HOM05D005561 ORTHO05D006834 2.6e-113 412.1 217 85.7
Gorai.002G114500 Gossypium raimondii HOM05D005561 ORTHO05D006834 2.2e-112 409.1 216 86.1
CSS0019163 Camellia sinensis var. sinensis HOM05D005561 ORTHO05D006834 3.7e-112 408.3 217 85.3
Gohir.D01G088800 Gossypium hirsutum HOM05D005561 ORTHO05D006834 6.3e-112 407.5 216 85.6
Gohir.A01G103500 Gossypium hirsutum HOM05D005561 ORTHO05D006834 8.3e-112 407.1 216 85.6
COL.COLO4_35541 Corchorus olitorius HOM05D005561 ORTHO05D006834 1.4e-111 406.4 217 84.3
TWI36G1622 Tripterygium wilfordii HOM05D005561 ORTHO05D006834 1.2e-110 403.3 217 82.9
Ciclev10000678m.g Citrus clementina HOM05D005561 ORTHO05D006834 2.7e-110 402.1 218 86.7
Prupe.5G009000 Prunus persica HOM05D005561 ORTHO05D006834 2.7e-110 402.1 216 85.2
Duzib116G0146 Durio zibethinus HOM05D005561 ORTHO05D006834 3.5e-110 401.7 217 84.3
Cfa014114 Carpinus fangiana HOM05D005561 ORTHO05D006834 5.9e-110 401.0 217 83.9
Haze_22832 Corylus avellana HOM05D005561 ORTHO05D006834 5.9e-110 401.0 217 83.9
TWI56G0057 Tripterygium wilfordii HOM05D005561 ORTHO05D006834 5.9e-110 401.0 218 81.7
Duzib041G0482 Durio zibethinus HOM05D005561 ORTHO05D006834 7.7e-110 400.6 216 84.3
QL02p015136 Quercus lobata HOM05D005561 ORTHO05D006834 7.7e-110 400.6 215 83.3
Dinv31967 Davidia involucrata HOM05D005561 ORTHO05D006834 1.7e-109 399.4 217 82.9
Thecc.08G062600 Theobroma cacao HOM05D005561 ORTHO05D006834 3.8e-109 398.3 217 82.9
Cpa.g.sc26.163 Carica papaya HOM05D005561 ORTHO05D006834 6.6e-109 397.5 217 83.4
MELO3C026526.2 Cucumis melo HOM05D005561 ORTHO05D006834 3.3e-108 395.2 216 81.9
FvH4_5g25640 Fragaria vesca HOM05D005561 ORTHO05D006834 3.3e-108 395.2 216 83.3
FAN04G1314 Fragaria x ananassa HOM05D005561 ORTHO05D006834 3.3e-108 395.2 216 83.3
MD06G1007100 Malus domestica HOM05D005561 ORTHO05D006834 3.3e-108 395.2 216 82.9
FAN18G1577 Fragaria x ananassa HOM05D005561 ORTHO05D006834 5.6e-108 394.4 216 83.3
ClCG08G009280 Citrullus lanatus HOM05D005561 ORTHO05D006834 7.3e-108 394.0 216 81.9
RcHm_v2.0_Chr7g0215931 Rosa chinensis HOM05D005561 ORTHO05D006834 7.3e-108 394.0 216 82.4
vmacro21786 Vaccinium macrocarpon HOM05D005561 ORTHO05D006834 7.3e-108 394.0 217 82.0
CsaV3_6G031410 Cucumis sativus L. HOM05D005561 ORTHO05D006834 9.5e-108 393.7 216 81.9
Duzib093G0247 Durio zibethinus HOM05D005561 ORTHO05D006834 9.5e-108 393.7 217 83.4
CANSAT78G2155 Cannabis sativa HOM05D005561 ORTHO05D006834 1.2e-107 393.3 216 83.3
Sabra05G0196600 Salix brachista HOM05D005561 ORTHO05D006834 1.2e-107 393.3 216 81.9
Potri.002G007700 Populus trichocarpa HOM05D005561 ORTHO05D006834 1.6e-107 392.9 217 82.5
DCAR_016786 Daucus carota HOM05D005561 ORTHO05D006834 2.1e-107 392.5 213 83.1
Potri.005G253500 Populus trichocarpa HOM05D005561 ORTHO05D006834 3.6e-107 391.7 216 81.9
Rhsim06G0005100 Rhododendron simsii HOM05D005561 ORTHO05D006834 3.6e-107 391.7 216 81.5
Eucgr.F01790 Eucalyptus grandis HOM05D005561 ORTHO05D006834 8.0e-107 390.6 217 82.0
FAN13G3253 Fragaria x ananassa HOM05D005561 ORTHO05D006834 1.8e-106 389.4 216 82.4
Ca_15401_v3 Cicer arietinum L. HOM05D005561 ORTHO05D006834 2.3e-106 389.0 214 83.2
Medtr3g115870 Medicago truncatula HOM05D005561 ORTHO05D006834 3.0e-106 388.7 217 81.6
GSVIVG01013397001 Vitis vinifera HOM05D005561 ORTHO05D006834 3.0e-106 388.7 205 86.3
FAN08G1213 Fragaria x ananassa HOM05D005561 ORTHO05D006834 5.2e-106 387.9 216 81.9
Lalb_Chr23g0265661 Lupinus albus HOM05D005561 ORTHO05D006834 5.2e-106 387.9 217 81.6
MD00G1113700 Malus domestica HOM05D005561 ORTHO05D006834 5.2e-106 387.9 216 81.5
TPR.G38189 Trifolium pratense HOM05D005561 ORTHO05D006834 5.2e-106 387.9 217 81.1
Psat5g009720 Pisum sativum HOM05D005561 ORTHO05D006834 1.2e-105 386.7 217 80.6
Sed0010562 Sechium edule HOM05D005561 ORTHO05D006834 3.4e-105 385.2 216 81.5
AUR62035143 Chenopodium quinoa HOM05D005561 ORTHO05D006834 4.4e-105 384.8 213 80.8
Lj1g0007073 Lotus japonicus HOM05D005561 ORTHO05D006834 4.4e-105 384.8 217 80.2
arahy.Tifrunner.gnm1.ann1.NG9QQJ Arachis hypogaea HOM05D005561 ORTHO05D006834 5.7e-105 384.4 217 81.1
CSS0027936 Camellia sinensis var. sinensis HOM05D005561 ORTHO05D006834 5.7e-105 384.4 217 79.3
CiPaw.07G135900 Carya illinoinensis HOM05D005561 ORTHO05D006834 7.5e-105 384.0 217 81.1
Lj4C7T6 Lonicera japonica HOM05D005561 ORTHO05D006834 1.7e-104 382.9 216 81.0
AUR62042576 Chenopodium quinoa HOM05D005561 ORTHO05D006834 2.9e-104 382.1 213 79.8
Lalb_Chr11g0061481 Lupinus albus HOM05D005561 ORTHO05D006834 4.9e-104 381.3 217 81.6
EL10Ac1g01911 Beta vulgaris HOM05D005561 ORTHO05D006834 1.4e-103 379.8 213 80.3
CAN.G311.134 Capsicum annuum HOM05D005561 ORTHO05D006834 3.2e-103 378.6 217 78.3
Sc02g0009190 Simmondsia chinensis HOM05D005561 ORTHO05D006834 3.2e-103 378.6 216 79.6
PGSC0003DMG400009989 Solanum tuberosum HOM05D005561 ORTHO05D006834 3.2e-103 378.6 216 78.7
Cc10_g00480 Coffea canephora HOM05D005561 ORTHO05D006834 5.4e-103 377.9 216 77.8
Oeu016877.1 Olea europaea HOM05D005561 ORTHO05D006834 7.0e-103 377.5 216 77.8
Nitab4.5_0000383g0380 Nicotiana tabacum HOM05D005561 ORTHO05D006834 1.6e-102 376.3 216 78.2
Solyc04g082580.3 Solanum lycopersicum HOM05D005561 ORTHO05D006834 2.0e-102 375.9 216 77.8
Sopen04g036210 Solanum pennellii HOM05D005561 ORTHO05D006834 2.0e-102 375.9 216 77.8
Peaxi162Scf00680g00110 Petunia axillaris HOM05D005561 ORTHO05D006834 2.7e-102 375.6 216 78.2
Ah.11g041760 Amaranthus hybridus HOM05D005561 ORTHO05D006834 4.6e-102 374.8 216 77.8
Nitab4.5_0001208g0070 Nicotiana tabacum HOM05D005561 ORTHO05D006834 1.3e-101 373.2 216 77.3
THA.LOC104801947 Tarenaya hassleriana HOM05D005561 ORTHO05D006834 1.7e-101 372.9 213 78.9
Glyma.04G016300 Glycine max HOM05D005561 ORTHO05D006834 3.9e-101 371.7 217 78.3
VMungo1309G3038 Vigna mungo HOM05D005561 ORTHO05D006834 1.1e-100 370.2 217 77.9
Phvul.009G012500 Phaseolus vulgaris HOM05D005561 ORTHO05D006834 2.5e-100 369.0 217 77.9
MSTRG.22092 Avicennia marina HOM05D005561 ORTHO05D006834 3.3e-100 368.6 217 76.5
Glyma.06G016400 Glycine max HOM05D005561 ORTHO05D006834 5.6e-100 367.9 217 77.4
Aa31LG9G12500 Aethionema arabicum HOM05D005561 ORTHO05D006834 4.7e-99 364.8 214 77.6
MSTRG.992 Avicennia marina HOM05D005561 ORTHO05D006834 6.2e-99 364.4 215 74.9
PGR083G0762 Punica granatum HOM05D005561 ORTHO05D006834 4.0e-98 361.7 215 77.2
HanXRQChr05g0144831 Helianthus annuus HOM05D005561 ORTHO05D006834 1.5e-97 359.8 216 71.8
Nn5g31005 Nelumbo nucifera HOM05D005561 ORTHO05D006834 8.3e-96 354.0 215 75.8
ECA232G0027 Erigeron canadensis HOM05D005561 ORTHO05D006834 1.4e-95 353.2 216 72.7
A09p19610 Brassica napus HOM05D005561 ORTHO05D006834 2.4e-95 352.4 214 74.3
BraA09t37572Z Brassica rapa HOM05D005561 ORTHO05D006834 2.4e-95 352.4 214 74.3
BcaC04g22001 Brassica carinata HOM05D005561 ORTHO05D006834 5.4e-95 351.3 214 73.8
SalBow1G8439 Salvia bowleyana HOM05D005561 ORTHO05D006834 1.2e-94 350.1 217 73.7
SalBow7G4605 Salvia bowleyana HOM05D005561 ORTHO05D006834 1.2e-94 350.1 217 73.7
BcaB07g31083 Brassica carinata HOM05D005561 ORTHO05D006834 2.0e-94 349.4 214 73.8
BcaNung05251 Brassica carinata HOM05D005561 ORTHO05D006834 2.0e-94 349.4 214 73.8
C09p24980 Brassica napus HOM05D005561 ORTHO05D006834 2.0e-94 349.4 214 73.4
BolC9t55390H Brassica oleracea HOM05D005561 ORTHO05D006834 2.0e-94 349.4 214 73.4
Sabra02G0006100 Salix brachista HOM05D005561 ORTHO05D006834 3.5e-94 348.6 179 87.7
HanXRQChr15g0492491 Helianthus annuus HOM05D005561 ORTHO05D006834 7.8e-94 347.4 216 71.8
AL8G19230 Arabidopsis lyrata HOM05D005561 ORTHO05D006834 1.7e-93 346.3 214 73.8
Carub.0008s0680 Capsella rubella HOM05D005561 ORTHO05D006834 1.7e-93 346.3 214 72.9
Lsat_1_v5_gn_2_1901 Lactuca sativa HOM05D005561 ORTHO05D006834 1.7e-93 346.3 213 70.9
Oeu026110.1 Olea europaea HOM05D005561 ORTHO05D006834 2.3e-93 345.9 203 74.4
Thhalv10003171m.g Eutrema salsugineum HOM05D005561 ORTHO05D006834 3.9e-93 345.1 214 73.4
AT5G42360 Arabidopsis thaliana HOM05D005561 ORTHO05D006834 3.3e-92 342.0 214 73.4
CARHR284980 Cardamine hirsuta HOM05D005561 ORTHO05D006834 7.3e-92 340.9 214 72.9
Lsat_1_v5_gn_9_45721 Lactuca sativa HOM05D005561 ORTHO05D006834 7.3e-92 340.9 222 67.1
AT5G42350 Arabidopsis thaliana HOM05D005561 ORTHO05D006834 1.2e-91 340.1 214 72.0
Migut.N02971 Erythranthe guttata HOM05D005561 ORTHO05D006834 1.2e-91 340.1 219 69.4
AL8G19220 Arabidopsis lyrata HOM05D005561 ORTHO05D006834 6.2e-91 337.8 214 72.9
ECA238G1647 Erigeron canadensis HOM05D005561 ORTHO05D006834 3.1e-90 335.5 214 68.7
PSO210G6209 Papaver somniferum HOM05D005561 ORTHO05D006834 3.1e-90 335.5 216 71.3
Aqoxy5G00977 Aquilegia oxysepala HOM05D005561 ORTHO05D006834 5.2e-90 334.7 216 69.4
Sp7g08210 Schrenkiella parvula HOM05D005561 ORTHO05D006834 2.0e-89 332.8 214 71.5
PSO170G1066 Papaver somniferum HOM05D005561 ORTHO05D006834 2.6e-89 332.4 216 70.4
SalBow6G7068 Salvia bowleyana HOM05D005561 ORTHO05D006834 7.5e-89 330.9 218 69.7
unitig_22.g5815 Utricularia gibba HOM05D005561 ORTHO05D006834 1.1e-87 327.0 216 67.6
Ciclev10009595m.g Citrus clementina HOM05D005561 ORTHO05D006834 6.0e-86 321.2 177 84.2
HanXRQChr06g0185211 Helianthus annuus HOM05D005561 ORTHO05D006834 1.3e-85 320.1 219 67.6
MBI05_g33302_MAGBIO Magnolia biondii HOM05D005561 ORTHO05D006834 3.9e-85 318.5 216 67.6
AUR62042579 Chenopodium quinoa HOM05D005561 ORTHO05D006834 1.1e-82 310.5 213 70.0
SGA_v2.0_scaffold54G19641 Striga asiatica HOM05D005561 ORTHO05D006834 1.2e-81 307.0 209 66.0
CDE05G2424 Ceratophyllum demersum HOM05D005561 ORTHO05D006834 4.4e-81 305.1 216 63.9
SEGI_19604 Sequoiadendron giganteum HOM05D005561 ORTHO05D006834 1.7e-77 293.1 216 63.0
SEGI_32322 Sequoiadendron giganteum HOM05D005561 ORTHO05D006834 1.7e-77 293.1 216 63.0
ATR0807G210 Amborella trichopoda HOM05D005561 ORTHO05D006834 3.0e-77 292.4 214 65.4
Nitab4.5_0009646g0070 Nicotiana tabacum HOM05D005561 ORTHO05D006834 1.5e-68 263.5 155 75.5
Actinidia17061 Actinidia chinensis HOM05D005561 ORTHO05D006834 1.9e-68 263.1 144 82.6
CARHR284990 Cardamine hirsuta HOM05D005561 ORTHO05D006834 1.8e-66 256.5 216 56.0
Zm00001eb320670 Zea mays HOM05D005561 ORTHO05D006834 4.5e-65 251.9 216 54.2
Mapoly0107s0031 Marchantia polymorpha HOM05D005561 ORTHO05D006834 3.2e-63 245.7 222 55.4
Os09g0555300 Oryza sativa ssp. japonica HOM05D005561 ORTHO05D006834 2.5e-60 236.1 216 51.4
TAR376G0177 Trochodendron aralioides HOM05D005561 ORTHO05D006834 6.9e-42 174.9 113 70.8
TPR.G26790 Trifolium pratense HOM05D005561 ORTHO05D006834 3.8e-40 169.1 159 51.6
Medtr3g032780 Medicago truncatula HOM05D005561 ORTHO05D006834 2.1e-30 136.7 138 53.6
Mapoly1710s0002 Marchantia polymorpha HOM05D005561 ORTHO05D006834 8.5e-16 88.2 202 31.2
AagrBONN_evm.TU.Sc2ySwM_228.4410 Anthoceros agrestis HOM05D005561 ORTHO05D006834 6.7e-13 78.6 154 33.1
Sc15g0004200 Simmondsia chinensis HOM05D005561 ORTHO05D006834 7.5e-12 75.1 44 70.5
AagrBONN_evm.TU.Sc2ySwM_117.2355 Anthoceros agrestis HOM05D005500 ORTHO05D006906 7.0e-10 68.6 160 31.2
SEGI_08151 Sequoiadendron giganteum HOM05D002809 ORTHO05D009091 7.0e-10 68.6 122 33.6
TPR.G28384 Trifolium pratense HOM05D005561 ORTHO05D006834 2.9e-08 63.2 56 53.6
AagrBONN_evm.TU.Sc2ySwM_344.2438 Anthoceros agrestis HOM05D002809 ORTHO05D004939 2.1e-06 57.0 120 27.5
AagrBONN_evm.TU.Sc2ySwM_228.2482 Anthoceros agrestis HOM05D005500 ORTHO05D006906 4.7e-06 55.8 122 27.9
TWI79G1718 Tripterygium wilfordii HOM05D000614 ORTHO05D000463 8.0e-06 55.1 175 26.9


User provided reference genes

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