Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr12.307 Acer truncatum HOM05D002081 ORTHO05D002088 1.5e-37 159.1 83 100.0
Atru.chr12.302 Acer truncatum HOM05D002081 ORTHO05D002088 3.3e-21 104.8 60 91.7
Atru.chr12.309 Acer truncatum HOM05D002081 ORTHO05D002088 4.4e-21 104.4 60 90.0
Atru.chr12.338 Acer truncatum HOM05D002081 ORTHO05D002088 4.4e-21 104.4 60 90.0
Cfa001415 Carpinus fangiana HOM05D002081 ORTHO05D002088 3.5e-18 94.7 60 80.0
Haze_17129 Corylus avellana HOM05D002081 ORTHO05D002088 3.5e-18 94.7 60 80.0
TWI15G0806 Tripterygium wilfordii HOM05D002081 ORTHO05D002088 4.5e-18 94.4 60 78.3
Lj8C78T3 Lonicera japonica HOM05D002081 ORTHO05D002088 1.3e-17 92.8 60 75.0
QL08p061675 Quercus lobata HOM05D002081 ORTHO05D002088 1.3e-17 92.8 60 76.7
TWI38G1695 Tripterygium wilfordii HOM05D002081 ORTHO05D002088 1.7e-17 92.4 60 76.7
CANSAT56G4043 Cannabis sativa HOM05D002081 ORTHO05D002088 5.0e-17 90.9 60 76.7
CANSAT64G2080 Cannabis sativa HOM05D002081 ORTHO05D002088 5.0e-17 90.9 60 76.7
TAR636G1215 Trochodendron aralioides HOM05D002081 ORTHO05D002088 5.0e-17 90.9 60 71.7
TAR636G1286 Trochodendron aralioides HOM05D002081 ORTHO05D002088 5.0e-17 90.9 60 71.7
Manes.10G024700 Manihot esculenta HOM05D002081 ORTHO05D002088 6.5e-17 90.5 59 76.3
Prupe.2G240900 Prunus persica HOM05D002081 ORTHO05D002088 8.5e-17 90.1 60 71.7
Rhsim09G0168000 Rhododendron simsii HOM05D002081 ORTHO05D002088 8.5e-17 90.1 60 70.0
Rhsim09G0168900 Rhododendron simsii HOM05D002081 ORTHO05D002088 8.5e-17 90.1 60 70.0
vmacro10211 Vaccinium macrocarpon HOM05D002081 ORTHO05D002088 8.5e-17 90.1 60 71.7
Cc02_g07330 Coffea canephora HOM05D002081 ORTHO05D002088 1.1e-16 89.7 60 71.7
Oeu001519.1 Olea europaea HOM05D002081 ORTHO05D002088 1.1e-16 89.7 60 70.0
Duzib106G0506 Durio zibethinus HOM05D002081 ORTHO05D002088 1.5e-16 89.4 60 71.7
Dinv16263 Davidia involucrata HOM05D002081 ORTHO05D002088 1.9e-16 89.0 60 68.3
MD01G1140300 Malus domestica HOM05D002081 ORTHO05D002088 1.9e-16 89.0 60 70.0
CiPaw.01G292200 Carya illinoinensis HOM05D002081 ORTHO05D002088 2.5e-16 88.6 60 71.7
THA.LOC104808815 Tarenaya hassleriana HOM05D002081 ORTHO05D002088 2.5e-16 88.6 60 71.7
MSTRG.261 Avicennia marina HOM05D002081 ORTHO05D002088 3.2e-16 88.2 60 68.3
Glyma.02G251200 Glycine max HOM05D002081 ORTHO05D002088 3.2e-16 88.2 60 75.0
Oeu031368.3 Olea europaea HOM05D000784 ORTHO05D000116 4.2e-16 87.8 60 68.3
Lalb_Chr10g0104771 Lupinus albus HOM05D002081 ORTHO05D002088 7.2e-16 87.0 60 73.3
CiPaw.02G187300 Carya illinoinensis HOM05D002081 ORTHO05D002088 9.4e-16 86.7 60 70.0
Glyma.14G065500 Glycine max HOM05D002081 ORTHO05D002088 9.4e-16 86.7 60 73.3
MD07G1204600 Malus domestica HOM05D002081 ORTHO05D002088 9.4e-16 86.7 60 70.0
Nn2g11249 Nelumbo nucifera HOM05D002081 ORTHO05D002088 9.4e-16 86.7 60 66.7
Peaxi162Scf00164g01416 Petunia axillaris HOM05D002081 ORTHO05D002088 9.4e-16 86.7 60 66.7
COL.COLO4_25522 Corchorus olitorius HOM05D002081 ORTHO05D002088 1.2e-15 86.3 60 70.0
TAR633G0599 Trochodendron aralioides HOM05D002081 ORTHO05D002088 1.2e-15 86.3 60 68.3
unitig_27.g25068 Utricularia gibba HOM05D002081 ORTHO05D002088 1.2e-15 86.3 60 68.3
MSTRG.8286 Avicennia marina HOM05D002081 ORTHO05D002088 1.6e-15 85.9 60 66.7
Phvul.008G230200 Phaseolus vulgaris HOM05D002081 ORTHO05D002088 1.6e-15 85.9 60 71.7
Sed0012888 Sechium edule HOM05D002081 ORTHO05D002088 1.6e-15 85.9 60 66.7
Thecc.10G034500 Theobroma cacao HOM05D002081 ORTHO05D002088 1.6e-15 85.9 60 70.0
VMungo0647G2156 Vigna mungo HOM05D002081 ORTHO05D002088 1.6e-15 85.9 60 71.7
Gohir.A05G347300 Gossypium hirsutum HOM05D002081 ORTHO05D002088 2.1e-15 85.5 60 68.3
Hma1.2p1_0039F.1_g024690 Hydrangea macrophylla HOM05D002081 ORTHO05D002088 2.1e-15 85.5 60 65.0
CsaV3_6G001420 Cucumis sativus L. HOM05D002081 ORTHO05D002088 2.7e-15 85.1 60 66.7
Migut.F01287 Erythranthe guttata HOM05D002081 ORTHO05D002088 2.7e-15 85.1 60 66.7
RcHm_v2.0_Chr1g0368591 Rosa chinensis HOM05D002081 ORTHO05D002088 2.7e-15 85.1 60 68.3
Sc10g0001880 Simmondsia chinensis HOM05D002081 ORTHO05D002088 3.6e-15 84.7 60 70.0
CAN.G1184.5 Capsicum annuum HOM05D002081 ORTHO05D002088 4.7e-15 84.3 60 63.3
ClCG11G006590 Citrullus lanatus HOM05D002081 ORTHO05D002088 4.7e-15 84.3 60 66.7
Duzib114G0689 Durio zibethinus HOM05D002081 ORTHO05D002088 4.7e-15 84.3 59 69.5
Gohir.D04G065000 Gossypium hirsutum HOM05D002081 ORTHO05D002088 4.7e-15 84.3 60 66.7
Gorai.012G073100 Gossypium raimondii HOM05D002081 ORTHO05D002088 4.7e-15 84.3 60 66.7
Medtr5g081040 Medicago truncatula HOM05D002081 ORTHO05D002088 4.7e-15 84.3 60 71.7
PGR142G4126 Punica granatum HOM05D002081 ORTHO05D002088 4.7e-15 84.3 59 69.5
CSS0002569 Camellia sinensis var. sinensis HOM05D002081 ORTHO05D002088 8.0e-15 83.6 60 63.3
Ciclev10032419m.g Citrus clementina HOM05D002081 ORTHO05D002088 8.0e-15 83.6 60 68.3
FvH4_7g23450 Fragaria vesca HOM05D002081 ORTHO05D002088 8.0e-15 83.6 60 63.3
Potri.008G060300 Populus trichocarpa HOM05D002081 ORTHO05D002088 8.0e-15 83.6 60 66.7
SGA_v2.0_scaffold2G00987 Striga asiatica HOM05D002081 ORTHO05D002088 8.0e-15 83.6 60 65.0
FAN03G2328 Fragaria x ananassa HOM05D002081 ORTHO05D002088 1.0e-14 83.2 60 65.0
Sp4g22090 Schrenkiella parvula HOM05D002081 ORTHO05D002088 1.0e-14 83.2 60 66.7
Actinidia02912 Actinidia chinensis HOM05D002081 ORTHO05D002088 1.4e-14 82.8 61 68.9
Aa31LG5G19810 Aethionema arabicum HOM05D002081 ORTHO05D002088 1.4e-14 82.8 59 64.4
A04p30240 Brassica napus HOM05D002081 ORTHO05D002088 1.4e-14 82.8 60 65.0
BraA04t18484Z Brassica rapa HOM05D002081 ORTHO05D002088 1.4e-14 82.8 60 65.0
LjContig00141g0016830 Lotus japonicus HOM05D002081 ORTHO05D002088 1.4e-14 82.8 60 66.7
Phvul.001G237000 Phaseolus vulgaris HOM05D002081 ORTHO05D002088 1.4e-14 82.8 60 71.7
Psat2g038920 Pisum sativum HOM05D002081 ORTHO05D002088 1.4e-14 82.8 60 70.0
Sabra08G0044400 Salix brachista HOM05D002081 ORTHO05D002088 1.4e-14 82.8 60 65.0
arahy.Tifrunner.gnm1.ann1.W8JJXT Arachis hypogaea HOM05D002081 ORTHO05D002088 1.8e-14 82.4 60 68.3
arahy.Tifrunner.gnm1.ann1.YTA3II Arachis hypogaea HOM05D002081 ORTHO05D002088 1.8e-14 82.4 60 68.3
Ca_05907_v3 Cicer arietinum L. HOM05D002081 ORTHO05D002088 1.8e-14 82.4 60 70.0
Eucgr.G02991 Eucalyptus grandis HOM05D002081 ORTHO05D002088 1.8e-14 82.4 59 64.4
Thhalv10017061m.g Eutrema salsugineum HOM05D002081 ORTHO05D002088 1.8e-14 82.4 60 65.0
Nitab4.5_0000987g0040 Nicotiana tabacum HOM05D002081 ORTHO05D002088 1.8e-14 82.4 60 60.0
Rhsim03G0136700 Rhododendron simsii HOM05D002081 ORTHO05D002088 1.8e-14 82.4 60 68.3
BcaB01g03572 Brassica carinata HOM05D002081 ORTHO05D002088 2.3e-14 82.0 60 63.3
AL4G37350 Arabidopsis lyrata HOM05D002081 ORTHO05D002088 3.0e-14 81.6 60 65.0
AT2G39805 Arabidopsis thaliana HOM05D002081 ORTHO05D002088 3.0e-14 81.6 60 65.0
BolC3t15026H Brassica oleracea HOM05D002081 ORTHO05D002088 3.0e-14 81.6 60 63.3
C04p67620 Brassica napus HOM05D002081 ORTHO05D002088 4.0e-14 81.3 60 63.3
BolC4t28261H Brassica oleracea HOM05D002081 ORTHO05D002088 4.0e-14 81.3 60 63.3
vmacro07036 Vaccinium macrocarpon HOM05D002081 ORTHO05D002088 4.0e-14 81.3 60 65.0
Peaxi162Scf00658g00313 Petunia axillaris HOM05D002081 ORTHO05D002088 5.2e-14 80.9 60 66.7
Potri.010G198300 Populus trichocarpa HOM05D002081 ORTHO05D002088 5.2e-14 80.9 59 66.1
CARHR134690 Cardamine hirsuta HOM05D002081 ORTHO05D002088 6.8e-14 80.5 60 65.0
MELO3C008246.2 Cucumis melo HOM05D002081 ORTHO05D002088 6.8e-14 80.5 60 63.3
DCAR_027588 Daucus carota HOM05D002081 ORTHO05D002088 6.8e-14 80.5 60 61.7
TPR.G25857 Trifolium pratense HOM05D002081 ORTHO05D002088 6.8e-14 80.5 60 66.7
C03p26400 Brassica napus HOM05D002081 ORTHO05D002088 8.8e-14 80.1 60 61.7
Gohir.A05G302300 Gossypium hirsutum HOM05D002081 ORTHO05D002088 8.8e-14 80.1 60 65.0
Nn2g13497 Nelumbo nucifera HOM05D002081 ORTHO05D002088 8.8e-14 80.1 60 65.0
ATR0559G126 Amborella trichopoda HOM05D002081 ORTHO05D002088 1.2e-13 79.7 59 66.1
A03p22300 Brassica napus HOM05D002081 ORTHO05D002088 1.2e-13 79.7 60 61.7
BraA03t11462Z Brassica rapa HOM05D002081 ORTHO05D002088 1.2e-13 79.7 60 61.7
Sabra10G0152600 Salix brachista HOM05D002081 ORTHO05D002088 1.2e-13 79.7 59 62.7
Sed0003628 Sechium edule HOM05D002081 ORTHO05D002088 1.2e-13 79.7 60 61.7
HanXRQChr08g0221211 Helianthus annuus HOM05D002081 ORTHO05D002088 1.5e-13 79.3 59 64.4
PGSC0003DMG400027135 Solanum tuberosum HOM05D002081 ORTHO05D002088 1.5e-13 79.3 60 66.7
GSVIVG01016466001 Vitis vinifera HOM05D002081 ORTHO05D002088 1.5e-13 79.3 60 60.0
Gohir.A10G223500 Gossypium hirsutum HOM05D002081 ORTHO05D002088 2.0e-13 79.0 60 65.0
Gohir.D05G301800 Gossypium hirsutum HOM05D002081 ORTHO05D002088 2.0e-13 79.0 60 63.3
Gorai.009G319900 Gossypium raimondii HOM05D002081 ORTHO05D002088 2.0e-13 79.0 60 63.3
Solyc05g052930.3 Solanum lycopersicum HOM05D002081 ORTHO05D002088 2.0e-13 79.0 60 65.0
Sopen05g031450 Solanum pennellii HOM05D002081 ORTHO05D002088 2.0e-13 79.0 60 65.0
VMungo1383G3669 Vigna mungo HOM05D002081 ORTHO05D002088 2.0e-13 79.0 60 68.3
Carub.0004s2191 Capsella rubella HOM05D002081 ORTHO05D002088 2.6e-13 78.6 60 63.3
Psat5g128720 Pisum sativum HOM05D002081 ORTHO05D002088 2.6e-13 78.6 60 66.7
BcaC01g05463 Brassica carinata HOM05D002081 ORTHO05D002088 3.4e-13 78.2 60 60.0
Medtr3g069150 Medicago truncatula HOM05D002081 ORTHO05D002088 4.4e-13 77.8 60 66.7
Medtr3g069170 Medicago truncatula HOM05D002081 ORTHO05D002088 4.4e-13 77.8 60 66.7
Aqoxy1G00829 Aquilegia oxysepala HOM05D002081 ORTHO05D002088 5.7e-13 77.4 60 55.0
Gohir.D10G235900 Gossypium hirsutum HOM05D002081 ORTHO05D002088 5.7e-13 77.4 60 63.3
Gorai.011G269800 Gossypium raimondii HOM05D002081 ORTHO05D002088 5.7e-13 77.4 60 63.3
SalBow6G3204 Salvia bowleyana HOM05D002081 ORTHO05D002088 1.7e-12 75.9 60 60.0
SalBow6G3476 Salvia bowleyana HOM05D002081 ORTHO05D002088 1.7e-12 75.9 60 60.0
TPR.G10328 Trifolium pratense HOM05D002081 ORTHO05D002088 2.2e-12 75.5 60 65.0
DCAR_024872 Daucus carota HOM05D002081 ORTHO05D002088 4.8e-12 74.3 60 58.3
MBI14_g09011_MAGBIO Magnolia biondii HOM05D002081 ORTHO05D002088 6.3e-12 73.9 59 59.3
PSO339G3649 Papaver somniferum HOM05D002081 ORTHO05D002088 6.3e-12 73.9 60 58.3
PSO384G4711 Papaver somniferum HOM05D002081 ORTHO05D002088 6.3e-12 73.9 60 58.3
Lsat_1_v5_gn_8_14680 Lactuca sativa HOM05D002081 ORTHO05D002088 3.1e-11 71.6 59 55.9
SHI03706 Sapria himalayana HOM05D002081 ORTHO05D002088 4.1e-11 71.2 62 58.1
Hund13800 Selenicereus undatus HOM05D002081 ORTHO05D002088 1.2e-10 69.7 60 65.0
CDE04G2263 Ceratophyllum demersum HOM05D001947 ORTHO05D002440 2.7e-10 68.6 59 55.9
AUR62040688 Chenopodium quinoa HOM05D002081 ORTHO05D002088 2.7e-10 68.6 60 63.3
Ah.16g102690 Amaranthus hybridus HOM05D001947 ORTHO05D002440 4.5e-10 67.8 60 58.3
AUR62012147 Chenopodium quinoa HOM05D002081 ORTHO05D002088 7.7e-10 67.0 60 61.7
EL10Ac2g04688 Beta vulgaris HOM05D002081 ORTHO05D002088 1.0e-09 66.6 60 60.0
Hund16051 Selenicereus undatus HOM05D002081 ORTHO05D002088 1.7e-09 65.9 60 58.3
HPP92_003399 Vanilla planifolia HOM05D002081 ORTHO05D002088 4.2e-08 61.2 58 50.0
arahy.Tifrunner.gnm1.ann1.FCQ45K Arachis hypogaea HOM05D002081 ORTHO05D002088 1.6e-07 59.3 60 50.0
arahy.Tifrunner.gnm1.ann1.KXA9QZ Arachis hypogaea HOM05D002081 ORTHO05D002088 1.6e-07 59.3 60 50.0
SEGI_41301 Sequoiadendron giganteum HOM05D002081 ORTHO05D002088 4.7e-07 57.8 59 47.5
FAN10G0083 Fragaria x ananassa HOM05D002081 ORTHO05D002088 1.4e-06 56.2 56 53.6
Os05g0455800 Oryza sativa ssp. japonica HOM05D002081 ORTHO05D002088 1.4e-06 56.2 59 49.2
SEGI_37536 Sequoiadendron giganteum HOM05D002081 ORTHO05D002088 1.8e-06 55.8 59 45.8
FAN01G0841 Fragaria x ananassa HOM05D002081 ORTHO05D002088 4.0e-06 54.7 56 50.0
FAN06G3391 Fragaria x ananassa HOM05D002081 ORTHO05D002088 4.0e-06 54.7 56 50.0
FAN06G4322 Fragaria x ananassa HOM05D002081 ORTHO05D002088 4.0e-06 54.7 56 50.0


User provided reference genes

Program Settings