Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr12.2238 Acer truncatum HOM05D002306 ORTHO05D005773 7.2e-217 756.9 371 100.0
Thecc.03G200900 Theobroma cacao HOM05D002306 ORTHO05D005773 3.2e-148 528.9 362 71.5
FAN03G1878 Fragaria x ananassa HOM05D002306 ORTHO05D005773 1.6e-147 526.6 360 72.2
Duzib084G0543 Durio zibethinus HOM05D002306 ORTHO05D005773 4.6e-147 525.0 345 74.8
Cfa016243 Carpinus fangiana HOM05D002306 ORTHO05D005773 6.1e-147 524.6 361 72.0
RcHm_v2.0_Chr1g0381481 Rosa chinensis HOM05D002306 ORTHO05D005773 1.8e-146 523.1 360 72.8
Duzib205G1406 Durio zibethinus HOM05D002306 ORTHO05D005773 2.3e-146 522.7 344 73.8
FvH4_7g31980 Fragaria vesca HOM05D002306 ORTHO05D005773 3.0e-146 522.3 359 71.9
CiPaw.06G045200 Carya illinoinensis HOM05D002306 ORTHO05D005773 6.7e-146 521.2 364 71.2
GSVIVG01038567001 Vitis vinifera HOM05D002306 ORTHO05D005773 8.7e-146 520.8 348 73.3
Haze_00198 Corylus avellana HOM05D002306 ORTHO05D005773 1.5e-145 520.0 361 71.5
Dinv29264 Davidia involucrata HOM05D002306 ORTHO05D005773 1.5e-145 520.0 344 72.7
MD07G1293200 Malus domestica HOM05D002306 ORTHO05D005773 1.9e-145 519.6 345 74.2
FAN06G4818 Fragaria x ananassa HOM05D002306 ORTHO05D005773 2.5e-145 519.2 359 71.3
QL09p008623 Quercus lobata HOM05D002306 ORTHO05D005773 2.5e-145 519.2 355 71.5
CiPaw.05G198100 Carya illinoinensis HOM05D002306 ORTHO05D005773 3.3e-145 518.8 359 71.9
FAN01G0065 Fragaria x ananassa HOM05D002306 ORTHO05D005773 3.3e-145 518.8 359 71.6
FAN10G2791 Fragaria x ananassa HOM05D002306 ORTHO05D005773 7.4e-145 517.7 383 68.7
Prupe.2G313000 Prunus persica HOM05D002306 ORTHO05D005773 1.3e-144 516.9 346 75.4
MD01G1222600 Malus domestica HOM05D002306 ORTHO05D005773 2.2e-144 516.2 349 73.4
THA.LOC104799971 Tarenaya hassleriana HOM05D002306 ORTHO05D005773 3.7e-144 515.4 350 72.3
Manes.05G190400 Manihot esculenta HOM05D002306 ORTHO05D005773 6.3e-144 514.6 348 73.0
Cpa.g.sc3.100 Carica papaya HOM05D002306 ORTHO05D005773 1.8e-143 513.1 350 73.1
Ciclev10020415m.g Citrus clementina HOM05D002306 ORTHO05D005773 1.8e-143 513.1 344 72.4
FAN10G0091 Fragaria x ananassa HOM05D002306 ORTHO05D005773 1.8e-143 513.1 382 68.6
Manes.01G185000 Manihot esculenta HOM05D002306 ORTHO05D005773 6.9e-143 511.1 347 72.0
CANSAT21G2187 Cannabis sativa HOM05D002306 ORTHO05D005773 9.0e-143 510.8 346 72.3
TWI39G0548 Tripterygium wilfordii HOM05D002306 ORTHO05D005773 2.0e-142 509.6 349 72.8
Gohir.D12G249800 Gossypium hirsutum HOM05D002306 ORTHO05D005773 7.7e-142 507.7 344 71.5
Gohir.A12G249000 Gossypium hirsutum HOM05D002306 ORTHO05D005773 1.0e-141 507.3 344 71.2
PGR142G2770 Punica granatum HOM05D002306 ORTHO05D005773 2.2e-141 506.1 348 71.3
Nn3g18949 Nelumbo nucifera HOM05D002306 ORTHO05D005773 3.8e-141 505.4 324 73.8
Gorai.008G267900 Gossypium raimondii HOM05D002306 ORTHO05D005773 6.5e-141 504.6 344 71.2
Lalb_Chr01g0013731 Lupinus albus HOM05D002306 ORTHO05D005773 1.4e-140 503.4 349 69.6
Hund21009 Selenicereus undatus HOM05D002306 ORTHO05D005773 1.9e-140 503.1 341 71.0
Eucgr.K00394 Eucalyptus grandis HOM05D002306 ORTHO05D005773 2.5e-140 502.7 324 75.3
Medtr1g007860 Medicago truncatula HOM05D002306 ORTHO05D005773 4.2e-140 501.9 347 68.9
Psat6g034960 Pisum sativum HOM05D002306 ORTHO05D005773 4.2e-140 501.9 346 69.7
Potri.012G017100 Populus trichocarpa HOM05D002306 ORTHO05D005773 4.2e-140 501.9 351 69.5
Hma1.2p1_1587F.1_g292250 Hydrangea macrophylla HOM05D002306 ORTHO05D005773 5.5e-140 501.5 348 71.0
Aqoxy6G02068 Aquilegia oxysepala HOM05D002306 ORTHO05D005773 9.4e-140 500.7 352 69.6
Glyma.19G065800 Glycine max HOM05D002306 ORTHO05D005773 1.2e-139 500.4 343 70.8
Migut.F00200 Erythranthe guttata HOM05D002306 ORTHO05D005773 1.6e-139 500.0 330 72.4
vmacro10129 Vaccinium macrocarpon HOM05D002306 ORTHO05D005773 1.6e-139 500.0 344 69.8
VMungo0647G1725 Vigna mungo HOM05D002306 ORTHO05D005773 2.1e-139 499.6 343 70.0
Glyma.14G162400 Glycine max HOM05D002306 ORTHO05D005773 3.6e-139 498.8 343 70.6
CSS0036676 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D005773 6.1e-139 498.0 355 68.5
Nitab4.5_0005491g0070 Nicotiana tabacum HOM05D002306 ORTHO05D005773 6.1e-139 498.0 347 70.0
Ca_12784_v3 Cicer arietinum L. HOM05D002306 ORTHO05D005773 3.9e-138 495.4 341 69.5
Ca_12788_v3 Cicer arietinum L. HOM05D002306 ORTHO05D005773 3.9e-138 495.4 341 69.5
Potri.015G011300 Populus trichocarpa HOM05D002306 ORTHO05D005773 5.1e-138 495.0 349 69.9
CsaV3_5G000460 Cucumis sativus L. HOM05D002306 ORTHO05D005773 6.7e-138 494.6 364 67.3
Ah.13g070360 Amaranthus hybridus HOM05D002306 ORTHO05D005773 1.5e-137 493.4 343 68.8
ClCG01G000390 Citrullus lanatus HOM05D002306 ORTHO05D005773 2.0e-137 493.0 364 67.3
Actinidia34230 Actinidia chinensis HOM05D002306 ORTHO05D005773 4.3e-137 491.9 351 69.2
BraA03t10835Z Brassica rapa HOM05D002306 ORTHO05D005773 5.7e-137 491.5 345 70.4
MELO3C005890.2 Cucumis melo HOM05D002306 ORTHO05D005773 5.7e-137 491.5 361 67.3
Nitab4.5_0000548g0060 Nicotiana tabacum HOM05D002306 ORTHO05D005773 5.7e-137 491.5 347 69.2
Actinidia06142 Actinidia chinensis HOM05D002306 ORTHO05D005773 9.7e-137 490.7 343 70.3
PSO135G0144 Papaver somniferum HOM05D002306 ORTHO05D005773 1.3e-136 490.3 341 68.3
Peaxi162Scf00740g00143 Petunia axillaris HOM05D002306 ORTHO05D005773 1.3e-136 490.3 344 69.5
CAN.G481.26 Capsicum annuum HOM05D002306 ORTHO05D005773 1.7e-136 490.0 344 69.5
CARHR266070 Cardamine hirsuta HOM05D002306 ORTHO05D005773 2.8e-136 489.2 345 69.3
Phvul.001G075000 Phaseolus vulgaris HOM05D002306 ORTHO05D005773 2.8e-136 489.2 343 68.8
Nn1g00292 Nelumbo nucifera HOM05D002306 ORTHO05D005773 4.8e-136 488.4 323 72.4
PGR042G0827 Punica granatum HOM05D002306 ORTHO05D005773 6.3e-136 488.0 356 68.0
PGSC0003DMG401018530 Solanum tuberosum HOM05D002306 ORTHO05D005773 8.2e-136 487.6 347 69.5
AUR62019412 Chenopodium quinoa HOM05D002306 ORTHO05D005773 1.1e-135 487.3 348 66.1
PSO384G1073 Papaver somniferum HOM05D002306 ORTHO05D005773 1.1e-135 487.3 340 67.9
SalBow4G3229 Salvia bowleyana HOM05D002306 ORTHO05D005773 1.1e-135 487.3 345 69.0
Cc02_g01380 Coffea canephora HOM05D002306 ORTHO05D005773 1.4e-135 486.9 345 69.0
DCAR_020335 Daucus carota HOM05D002306 ORTHO05D005773 1.4e-135 486.9 349 68.2
Hund11654 Selenicereus undatus HOM05D002306 ORTHO05D005773 1.8e-135 486.5 317 71.0
Lj1g0011159 Lotus japonicus HOM05D002306 ORTHO05D005773 3.1e-135 485.7 360 66.1
Oeu037052.1 Olea europaea HOM05D002306 ORTHO05D005773 3.1e-135 485.7 357 68.3
Rhsim09G0206400 Rhododendron simsii HOM05D002306 ORTHO05D005773 3.1e-135 485.7 344 68.3
EL10Ac3g05271 Beta vulgaris HOM05D002306 ORTHO05D005773 4.1e-135 485.3 349 67.0
A03p15450 Brassica napus HOM05D002306 ORTHO05D005773 4.1e-135 485.3 345 69.6
AT5G53050 Arabidopsis thaliana HOM05D002306 ORTHO05D005773 9.1e-135 484.2 345 70.4
BcaB01g04217 Brassica carinata HOM05D002306 ORTHO05D005773 9.1e-135 484.2 347 69.2
BraA03t10837Z Brassica rapa HOM05D002306 ORTHO05D005773 9.1e-135 484.2 351 68.9
Solyc03g083010.3 Solanum lycopersicum HOM05D002306 ORTHO05D005773 1.2e-134 483.8 344 68.6
AUR62006082 Chenopodium quinoa HOM05D002306 ORTHO05D005773 1.5e-134 483.4 343 67.3
Thhalv10013609m.g Eutrema salsugineum HOM05D002306 ORTHO05D005773 1.5e-134 483.4 361 68.1
Sp6g15210 Schrenkiella parvula HOM05D002306 ORTHO05D005773 2.0e-134 483.0 362 67.1
Sopen03g022820 Solanum pennellii HOM05D002306 ORTHO05D005773 3.4e-134 482.3 344 68.3
arahy.Tifrunner.gnm1.ann1.FPLI9C Arachis hypogaea HOM05D002306 ORTHO05D005773 5.9e-134 481.5 345 68.4
BcaB08g35665 Brassica carinata HOM05D002306 ORTHO05D005773 5.9e-134 481.5 360 66.4
A03p15420 Brassica napus HOM05D002306 ORTHO05D005773 5.9e-134 481.5 338 70.1
BcaC04g20512 Brassica carinata HOM05D002306 ORTHO05D005773 1.7e-133 479.9 344 67.7
BolC9t57152H Brassica oleracea HOM05D002306 ORTHO05D005773 1.7e-133 479.9 344 67.7
AL8G27680 Arabidopsis lyrata HOM05D002306 ORTHO05D005773 2.2e-133 479.6 388 63.9
arahy.Tifrunner.gnm1.ann1.4T5RFS Arachis hypogaea HOM05D002306 ORTHO05D005773 5.0e-133 478.4 345 68.1
Sc13g0009860 Simmondsia chinensis HOM05D002306 ORTHO05D005773 5.0e-133 478.4 323 69.3
MBI06_g46366_MAGBIO Magnolia biondii HOM05D002306 ORTHO05D005773 1.1e-132 477.2 345 68.7
Aa31LG3G9420 Aethionema arabicum HOM05D002306 ORTHO05D005773 2.5e-132 476.1 383 62.1
Eucgr.A01449 Eucalyptus grandis HOM05D002306 ORTHO05D005773 2.5e-132 476.1 317 71.6
A10p10540 Brassica napus HOM05D002306 ORTHO05D005773 4.2e-132 475.3 344 67.2
C03p18010 Brassica napus HOM05D002306 ORTHO05D005773 4.2e-132 475.3 347 68.6
BolC3t14206H Brassica oleracea HOM05D002306 ORTHO05D005773 4.2e-132 475.3 347 68.6
BraA10t43138Z Brassica rapa HOM05D002306 ORTHO05D005773 5.5e-132 474.9 344 66.9
Actinidia08661 Actinidia chinensis HOM05D002306 ORTHO05D005773 1.6e-131 473.4 366 65.6
Carub.0008s1325 Capsella rubella HOM05D002306 ORTHO05D005773 2.1e-131 473.0 345 67.2
BcaC01g06217 Brassica carinata HOM05D002306 ORTHO05D005773 2.7e-131 472.6 347 68.3
SGA_v2.0_scaffold44G16812 Striga asiatica HOM05D002306 ORTHO05D005773 6.1e-131 471.5 345 68.1
Sp7g25780 Schrenkiella parvula HOM05D002306 ORTHO05D005773 1.8e-130 469.9 347 67.7
ECA232G4612 Erigeron canadensis HOM05D002306 ORTHO05D005773 3.0e-130 469.2 346 66.2
Sed0011455 Sechium edule HOM05D002306 ORTHO05D005773 3.0e-130 469.2 324 70.1
Sabra15G0009300 Salix brachista HOM05D002306 ORTHO05D005773 2.0e-129 466.5 413 59.8
CDE04G0267 Ceratophyllum demersum HOM05D002306 ORTHO05D005773 3.3e-129 465.7 322 66.5
HanXRQChr15g0485691 Helianthus annuus HOM05D002306 ORTHO05D005773 7.4e-129 464.5 344 65.1
C09p42760 Brassica napus HOM05D002306 ORTHO05D005773 1.3e-128 463.8 372 62.4
Os05g0542200 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D005773 3.1e-127 459.1 358 63.1
Sabra12G0015300 Salix brachista HOM05D002306 ORTHO05D005773 5.3e-127 458.4 410 59.8
Lsat_1_v5_gn_9_49801 Lactuca sativa HOM05D002306 ORTHO05D005773 7.0e-127 458.0 365 63.0
Actinidia08663 Actinidia chinensis HOM05D002306 ORTHO05D005773 2.0e-126 456.4 360 64.2
Lsat_1_v5_gn_2_136261 Lactuca sativa HOM05D002306 ORTHO05D005773 4.5e-126 455.3 318 69.5
HanXRQChr04g0100471 Helianthus annuus HOM05D002306 ORTHO05D005773 2.9e-125 452.6 318 67.3
Zm00001eb294430 Zea mays HOM05D002306 ORTHO05D005773 1.6e-123 446.8 365 61.4
ATR0602G226 Amborella trichopoda HOM05D002306 ORTHO05D005773 2.7e-123 446.0 358 62.3
Oeu060994.1 Olea europaea HOM05D002306 ORTHO05D005773 1.3e-120 437.2 349 63.9
Sed0009393 Sechium edule HOM05D002306 ORTHO05D005773 4.8e-120 435.3 291 72.2
Zm00001eb342430 Zea mays HOM05D002306 ORTHO05D005773 1.4e-119 433.7 392 56.9
unitig_748.g7291 Utricularia gibba HOM05D002306 ORTHO05D005773 5.3e-119 431.8 328 63.1
HPP92_010499 Vanilla planifolia HOM05D002306 ORTHO05D005773 1.8e-114 416.8 349 59.9
Lj3C903G6 Lonicera japonica HOM05D002306 ORTHO05D005773 4.4e-105 385.6 226 81.0
Mapoly0155s0003 Marchantia polymorpha HOM05D002306 ORTHO05D005773 1.6e-102 377.1 389 48.1
AagrBONN_evm.TU.Sc2ySwM_228.3658 Anthoceros agrestis HOM05D002306 ORTHO05D005773 6.8e-90 335.1 329 50.8
Pp3c4_28770 Physcomitrium patens HOM05D002306 ORTHO05D005773 2.2e-88 330.1 304 50.0
CBR_g39074 Chara braunii HOM05D002306 ORTHO05D005773 1.4e-87 327.4 362 46.1
COL.COLO4_16788 Corchorus olitorius HOM05D002306 ORTHO05D005773 3.2e-87 326.2 196 79.1
CBR_g52250 Chara braunii HOM05D002306 ORTHO05D005773 1.1e-82 311.2 334 46.4
SHI02360 Sapria himalayana HOM05D002306 ORTHO05D005773 6.8e-82 308.5 295 55.3
SMO147G0069 Selaginella moellendorffii HOM05D002306 ORTHO05D005773 3.9e-77 292.7 271 52.8
unitig_0.g2458 Utricularia gibba HOM05D000451 ORTHO05D000351 1.9e-76 290.4 286 54.2
QL05p052295 Quercus lobata HOM05D002306 ORTHO05D005773 1.8e-74 283.9 173 77.5
SGA_v2.0_scaffold192G40528 Striga asiatica HOM05D005626 ORTHO05D007032 1.3e-69 267.7 344 45.1
MBI06_g36471_MAGBIO Magnolia biondii HOM05D002306 ORTHO05D005773 1.9e-68 263.8 249 56.6
Cre11.g481250 Chlamydomonas reinhardtii HOM05D002306 ORTHO05D005773 4.6e-46 189.5 287 38.0
Ciclev10023844m.g Citrus clementina HOM05D002306 ORTHO05D005773 1.0e-45 188.3 137 68.6
Lsat_1_v5_gn_7_80100 Lactuca sativa HOM05D002306 ORTHO05D005773 1.6e-43 181.0 135 63.0
CDE03G0512 Ceratophyllum demersum HOM05D002306 ORTHO05D005773 1.5e-41 174.5 127 60.6
Cre02.g077451 Chlamydomonas reinhardtii HOM05D002306 ORTHO05D005773 5.9e-33 146.0 314 30.9
COL.COLO4_16789 Corchorus olitorius HOM05D002476 ORTHO05D002652 3.9e-29 133.3 115 57.4
PRCOL_00002303 Prasinoderma coloniale HOM05D002306 ORTHO05D005773 8.7e-29 132.1 310 30.6
Actinidia03176 Actinidia chinensis HOM05D002306 ORTHO05D005773 9.1e-26 122.1 103 60.2
Lj3C903G5 Lonicera japonica HOM05D002306 ORTHO05D005773 4.5e-25 119.8 115 55.7
TPR.G40491 Trifolium pratense HOM05D002306 ORTHO05D005773 2.7e-22 110.5 61 82.0
CDE03G0170 Ceratophyllum demersum HOM05D002306 ORTHO05D005773 3.6e-22 110.2 85 64.7
SEGI_37240 Sequoiadendron giganteum HOM05D002306 ORTHO05D005773 3.9e-21 106.7 59 78.0
Lsat_1_v5_gn_5_184380 Lactuca sativa HOM05D000942 ORTHO05D014303 5.7e-20 102.8 61 77.0
SEGI_13792 Sequoiadendron giganteum HOM05D002306 ORTHO05D005773 8.2e-19 99.0 72 61.1
Medtr5g071310 Medicago truncatula HOM05D000009 ORTHO05D000008 3.4e-17 93.6 121 45.5
SEGI_09966 Sequoiadendron giganteum HOM05D002306 ORTHO05D005773 4.5e-17 93.2 139 40.3
Oeu053931.1 Olea europaea HOM05D002306 ORTHO05D005773 6.5e-16 89.4 68 63.2
TAR629G2756 Trochodendron aralioides HOM05D002306 ORTHO05D005773 7.9e-14 82.4 68 64.7
SEGI_03713 Sequoiadendron giganteum HOM05D002306 ORTHO05D036569 2.2e-11 74.3 50 68.0
Lsat_1_v5_gn_7_88240 Lactuca sativa HOM05D000942 ORTHO05D014303 2.8e-11 73.9 122 41.8
Medtr5g070490 Medicago truncatula HOM05D000009 ORTHO05D000008 2.6e-09 67.4 96 42.7
Medtr5g070470 Medicago truncatula HOM05D000009 ORTHO05D000008 1.0e-08 65.5 134 38.1
SMO201G0237 Selaginella moellendorffii HOM05D000363 ORTHO05D000236 2.9e-08 63.9 264 25.0
Cpa.g.sc6.184 Carica papaya HOM05D000363 ORTHO05D000236 5.0e-08 63.2 147 30.6
MD02G1138500 Malus domestica HOM05D000363 ORTHO05D000236 5.0e-08 63.2 168 31.0
MD15G1252000 Malus domestica HOM05D000363 ORTHO05D000236 1.5e-07 61.6 147 30.6
QL11p045365 Quercus lobata HOM05D000363 ORTHO05D000236 3.2e-07 60.5 148 32.4
Prupe.7G162400 Prunus persica HOM05D000363 ORTHO05D000236 5.5e-07 59.7 170 29.4
FAN23G1427 Fragaria x ananassa HOM05D000363 ORTHO05D000236 7.2e-07 59.3 147 30.6
FvH4_1g12460 Fragaria vesca HOM05D000363 ORTHO05D000236 9.4e-07 58.9 147 29.9
FAN19G0327 Fragaria x ananassa HOM05D000363 ORTHO05D000236 9.4e-07 58.9 147 29.9
Medtr5g071570 Medicago truncatula HOM05D000009 ORTHO05D000008 9.4e-07 58.9 72 47.2
Gohir.A11G181100 Gossypium hirsutum HOM05D000363 ORTHO05D000236 1.6e-06 58.2 148 30.4
AagrBONN_evm.TU.Sc2ySwM_362.2316 Anthoceros agrestis HOM05D000363 ORTHO05D000236 2.1e-06 57.8 158 30.4
Gorai.007G199500 Gossypium raimondii HOM05D000363 ORTHO05D000236 2.1e-06 57.8 148 30.4
CANSAT01G2185 Cannabis sativa HOM05D000363 ORTHO05D000236 2.7e-06 57.4 148 29.1
PSO170G0253 Papaver somniferum HOM05D000363 ORTHO05D000236 4.7e-06 56.6 348 22.4
GSVIVG01018184001 Vitis vinifera HOM05D000363 ORTHO05D000236 4.7e-06 56.6 128 34.4
RcHm_v2.0_Chr2g0100321 Rosa chinensis HOM05D000363 ORTHO05D000236 6.1e-06 56.2 146 29.5
AagrBONN_evm.TU.Sc2ySwM_362.2317 Anthoceros agrestis HOM05D000363 ORTHO05D000236 8.0e-06 55.8 158 29.7
CDE08G0389 Ceratophyllum demersum HOM05D000363 ORTHO05D000236 8.0e-06 55.8 76 39.5
HanXRQChr01g0001081 Helianthus annuus HOM05D000363 ORTHO05D000236 8.0e-06 55.8 264 22.3


User provided reference genes

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