Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr12.1697 Acer truncatum HOM05D004737 ORTHO05D005623 1.7e-67 259.2 133 100.0
Atru.chr12.1688 Acer truncatum HOM05D004737 ORTHO05D005623 3.1e-21 105.5 125 53.6
GSVIVG01019762001 Vitis vinifera HOM05D004737 ORTHO05D005623 1.4e-13 80.1 158 32.3
Atru.chr2.2103 Acer truncatum HOM05D004737 ORTHO05D005623 1.8e-13 79.7 161 30.4
Rhsim02G0228600 Rhododendron simsii HOM05D004737 ORTHO05D005623 1.2e-12 77.0 158 32.3
CSS0013453 Camellia sinensis var. sinensis HOM05D004737 ORTHO05D005623 1.6e-12 76.6 161 31.7
vmacro11322 Vaccinium macrocarpon HOM05D004737 ORTHO05D005623 2.0e-12 76.3 158 30.4
DCAR_008401 Daucus carota HOM05D004737 ORTHO05D005623 4.5e-12 75.1 119 36.1
HanXRQChr06g0165541 Helianthus annuus HOM05D004737 ORTHO05D005623 4.5e-12 75.1 159 31.4
Lj8A232T63 Lonicera japonica HOM05D004737 ORTHO05D005623 5.9e-12 74.7 158 31.6
MD14G1103600 Malus domestica HOM05D004737 ORTHO05D005623 5.9e-12 74.7 158 29.7
Hma1.2p1_0896F.1_g233950 Hydrangea macrophylla HOM05D004737 ORTHO05D005623 7.8e-12 74.3 135 31.9
Prupe.5G098900 Prunus persica HOM05D004737 ORTHO05D005623 7.8e-12 74.3 158 29.7
Dinv38949 Davidia involucrata HOM05D004737 ORTHO05D005623 1.3e-11 73.6 161 29.2
QL12p034148 Quercus lobata HOM05D004737 ORTHO05D005623 2.3e-11 72.8 158 29.7
TWI38G1747 Tripterygium wilfordii HOM05D004737 ORTHO05D005623 2.3e-11 72.8 158 29.7
Ciclev10006013m.g Citrus clementina HOM05D004737 ORTHO05D005623 3.9e-11 72.0 155 30.3
TAR625G0056 Trochodendron aralioides HOM05D004737 ORTHO05D005623 8.6e-11 70.9 158 28.5
Duzib084G0936 Durio zibethinus HOM05D004737 ORTHO05D005623 1.1e-10 70.5 171 29.8
QL12p033263 Quercus lobata HOM05D004737 ORTHO05D005623 1.1e-10 70.5 158 29.1
QL12p034065 Quercus lobata HOM05D004737 ORTHO05D005623 1.1e-10 70.5 158 29.1
QL12p034121 Quercus lobata HOM05D000005 ORTHO05D000833 1.1e-10 70.5 158 29.7
Sed0019193 Sechium edule HOM05D004737 ORTHO05D005623 2.5e-10 69.3 158 28.5
Cc08_g14650 Coffea canephora HOM05D004737 ORTHO05D005623 4.3e-10 68.6 159 28.3
Haze_08850 Corylus avellana HOM05D004737 ORTHO05D005623 7.3e-10 67.8 155 29.0
Haze_08864 Corylus avellana HOM05D004737 ORTHO05D005623 7.3e-10 67.8 155 29.0
ECA246G0717 Erigeron canadensis HOM05D004737 ORTHO05D005623 7.3e-10 67.8 159 30.2
SalBow5G1266 Salvia bowleyana HOM05D004737 ORTHO05D005623 7.3e-10 67.8 158 27.8
EL10Ac6g13984 Beta vulgaris HOM05D004737 ORTHO05D005623 1.2e-09 67.0 158 28.5
Hma1.2p1_0896F.1_g233940 Hydrangea macrophylla HOM05D004737 ORTHO05D005623 1.2e-09 67.0 158 27.2
Potri.001G104800 Populus trichocarpa HOM05D004737 ORTHO05D005623 2.1e-09 66.2 158 27.8
CDE04G2100 Ceratophyllum demersum HOM05D004737 ORTHO05D005623 2.8e-09 65.9 171 26.3
Gohir.D08G200800 Gossypium hirsutum HOM05D004737 ORTHO05D005623 2.8e-09 65.9 158 27.2
Gorai.004G211600 Gossypium raimondii HOM05D004737 ORTHO05D005623 2.8e-09 65.9 158 27.2
Manes.02G022400 Manihot esculenta HOM05D004737 ORTHO05D005623 3.6e-09 65.5 171 28.1
Nitab4.5_0010794g0020 Nicotiana tabacum HOM05D004737 ORTHO05D005623 3.6e-09 65.5 178 27.0
SGA_v2.0_scaffold96G28950 Striga asiatica HOM05D004737 ORTHO05D005623 3.6e-09 65.5 135 29.6
TPR.G6698 Trifolium pratense HOM05D004737 ORTHO05D005623 3.6e-09 65.5 162 25.9
Nitab4.5_0001215g0220 Nicotiana tabacum HOM05D004737 ORTHO05D005623 4.7e-09 65.1 158 27.8
RcHm_v2.0_Chr7g0197851 Rosa chinensis HOM05D004737 ORTHO05D005623 4.7e-09 65.1 159 28.9
Thecc.03G277700 Theobroma cacao HOM05D004737 ORTHO05D005623 4.7e-09 65.1 73 45.2
ClCG01G002790 Citrullus lanatus HOM05D004737 ORTHO05D005623 1.0e-08 63.9 155 27.7
AUR62010668 Chenopodium quinoa HOM05D004737 ORTHO05D005623 1.4e-08 63.5 159 27.7
COL.COLO4_34453 Corchorus olitorius HOM05D004737 ORTHO05D005623 1.4e-08 63.5 161 26.1
Lj2g0011086 Lotus japonicus HOM05D004737 ORTHO05D005623 1.4e-08 63.5 159 28.9
Eucgr.E00582 Eucalyptus grandis HOM05D004737 ORTHO05D005623 1.8e-08 63.2 162 25.3
Lsat_1_v5_gn_3_7380 Lactuca sativa HOM05D004737 ORTHO05D005623 1.8e-08 63.2 158 27.2
Atru.chr11.10 Acer truncatum HOM05D004737 ORTHO05D005623 2.3e-08 62.8 175 25.7
Atru.chr2.774 Acer truncatum HOM05D004737 ORTHO05D005623 2.3e-08 62.8 170 25.9
CsaV3_5G002870 Cucumis sativus L. HOM05D004737 ORTHO05D005623 3.1e-08 62.4 158 26.6
Gohir.A08G182200 Gossypium hirsutum HOM05D004737 ORTHO05D005623 3.1e-08 62.4 158 26.6
CANSAT21G0205 Cannabis sativa HOM05D004737 ORTHO05D005623 4.0e-08 62.0 158 27.2
Nn5g30495 Nelumbo nucifera HOM05D004737 ORTHO05D005623 4.0e-08 62.0 180 26.1
Aqoxy6G02772 Aquilegia oxysepala HOM05D004737 ORTHO05D005623 5.2e-08 61.6 73 41.1
PGR042G1084 Punica granatum HOM05D004737 ORTHO05D005623 5.2e-08 61.6 159 26.4
SGA_v2.0_scaffold253G45138 Striga asiatica HOM05D004737 ORTHO05D005623 5.2e-08 61.6 158 25.9
AT3G52905 Arabidopsis thaliana HOM05D004737 ORTHO05D005623 6.8e-08 61.2 161 28.0
Cpa.g.sc128.49 Carica papaya HOM05D004737 ORTHO05D005623 8.9e-08 60.8 71 40.8
CiPaw.11G135900 Carya illinoinensis HOM05D004737 ORTHO05D005623 1.2e-07 60.5 158 25.3
AL5G33690 Arabidopsis lyrata HOM05D004737 ORTHO05D005623 1.5e-07 60.1 161 27.3
MSTRG.25602 Avicennia marina HOM05D004737 ORTHO05D005623 1.5e-07 60.1 159 26.4
Ah.02g116610 Amaranthus hybridus HOM05D000756 ORTHO05D000604 2.0e-07 59.7 143 26.6
AUR62017215 Chenopodium quinoa HOM05D004737 ORTHO05D005623 2.0e-07 59.7 159 26.4
CARHR162770 Cardamine hirsuta HOM05D004737 ORTHO05D005623 2.6e-07 59.3 161 28.0
BcaC02g09203 Brassica carinata HOM05D004737 ORTHO05D005623 3.4e-07 58.9 161 26.7
A04p06580 Brassica napus HOM05D004737 ORTHO05D005623 3.4e-07 58.9 161 26.7
C04p40020 Brassica napus HOM05D004737 ORTHO05D005623 3.4e-07 58.9 161 26.7
BolC4t25575H Brassica oleracea HOM05D004737 ORTHO05D005623 3.4e-07 58.9 161 26.7
BraA04t16363Z Brassica rapa HOM05D004737 ORTHO05D005623 3.4e-07 58.9 161 26.7
Thhalv10010768m.g Eutrema salsugineum HOM05D004737 ORTHO05D005623 3.4e-07 58.9 161 27.3
HPP92_015901 Vanilla planifolia HOM05D004737 ORTHO05D005623 3.4e-07 58.9 173 27.7
FvH4_5g02300 Fragaria vesca HOM05D004737 ORTHO05D005623 7.5e-07 57.8 159 28.3
Phvul.002G157400 Phaseolus vulgaris HOM05D004737 ORTHO05D005623 7.5e-07 57.8 159 26.4
Sc07g0009740 Simmondsia chinensis HOM05D004737 ORTHO05D005623 7.5e-07 57.8 119 28.6
THA.LOC104805035 Tarenaya hassleriana HOM05D004737 ORTHO05D005623 7.5e-07 57.8 164 25.6
VMungo1215G1017 Vigna mungo HOM05D004737 ORTHO05D005623 9.8e-07 57.4 159 25.8
Carub.0005s1938 Capsella rubella HOM05D004737 ORTHO05D005623 1.3e-06 57.0 161 28.0
Sp5g09430 Schrenkiella parvula HOM05D004737 ORTHO05D005623 1.3e-06 57.0 161 26.7
Psat2g182280 Pisum sativum HOM05D004737 ORTHO05D005623 1.7e-06 56.6 71 40.8
Sabra01G0079500 Salix brachista HOM05D004737 ORTHO05D005623 2.9e-06 55.8 67 43.3
MELO3C005669.2 Cucumis melo HOM05D004737 ORTHO05D005623 3.7e-06 55.5 74 37.8
A07p21280 Brassica napus HOM05D004737 ORTHO05D005623 8.3e-06 54.3 162 26.5
BraA07t29816Z Brassica rapa HOM05D004737 ORTHO05D005623 8.3e-06 54.3 162 26.5
Solyc10g074990.2 Solanum lycopersicum HOM05D004737 ORTHO05D005623 8.3e-06 54.3 158 25.3


User provided reference genes

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