Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr12.1378 Acer truncatum HOM05D005955 ORTHO05D007633 1.7e-148 529.3 260 100.0
Ciclev10005678m.g Citrus clementina HOM05D005955 ORTHO05D007633 1.4e-118 429.9 261 81.6
TWI63G0596 Tripterygium wilfordii HOM05D005955 ORTHO05D007633 6.2e-114 414.5 260 78.1
GSVIVG01000659001 Vitis vinifera HOM05D005955 ORTHO05D007633 1.5e-112 409.8 257 78.2
CiPaw.13G012200 Carya illinoinensis HOM05D005955 ORTHO05D007633 6.4e-111 404.4 242 80.6
Thecc.10G166400 Theobroma cacao HOM05D005955 ORTHO05D007633 3.2e-110 402.1 263 78.7
THA.LOC104824190 Tarenaya hassleriana HOM05D005955 ORTHO05D007633 2.7e-109 399.1 253 77.5
Duzib128G0282 Durio zibethinus HOM05D005955 ORTHO05D007633 3.5e-109 398.7 255 78.4
QL04p014297 Quercus lobata HOM05D005955 ORTHO05D007633 4.6e-109 398.3 257 75.9
Potri.001G025601 Populus trichocarpa HOM05D005955 ORTHO05D007633 3.9e-108 395.2 260 76.2
Ca_27127_v3 Cicer arietinum L. HOM05D005955 ORTHO05D007633 6.6e-108 394.4 262 74.0
Eucgr.G03245 Eucalyptus grandis HOM05D005955 ORTHO05D007633 6.6e-108 394.4 256 77.0
Gohir.D04G014500 Gossypium hirsutum HOM05D005955 ORTHO05D007633 8.6e-108 394.0 243 81.5
MD02G1290300 Malus domestica HOM05D005955 ORTHO05D007633 8.6e-108 394.0 260 73.8
arahy.Tifrunner.gnm1.ann1.RGX0XE Arachis hypogaea HOM05D005955 ORTHO05D007633 1.1e-107 393.7 256 74.2
Manes.11G004000 Manihot esculenta HOM05D005955 ORTHO05D007633 4.3e-107 391.7 257 76.3
Haze_03068 Corylus avellana HOM05D005955 ORTHO05D007633 9.6e-107 390.6 255 76.1
Sabra01G0018900 Salix brachista HOM05D005955 ORTHO05D007633 2.1e-106 389.4 260 75.4
Psat5g219280 Pisum sativum HOM05D005955 ORTHO05D007633 2.8e-106 389.0 244 76.2
Glyma.11G154400 Glycine max HOM05D005955 ORTHO05D007633 1.4e-105 386.7 244 77.0
Medtr3g017610 Medicago truncatula HOM05D005955 ORTHO05D007633 1.8e-105 386.3 259 72.6
Phvul.005G029600 Phaseolus vulgaris HOM05D005955 ORTHO05D007633 1.8e-105 386.3 231 79.7
Lalb_Chr04g0264041 Lupinus albus HOM05D005955 ORTHO05D007633 4.0e-105 385.2 258 74.8
Aa31sc434G20 Aethionema arabicum HOM05D005955 ORTHO05D007633 6.9e-105 384.4 257 73.5
Thhalv10010628m.g Eutrema salsugineum HOM05D005955 ORTHO05D007633 6.9e-105 384.4 247 76.5
Dinv09262 Davidia involucrata HOM05D005955 ORTHO05D007633 8.9e-105 384.0 248 76.6
Gohir.A05G401400 Gossypium hirsutum HOM05D005955 ORTHO05D007633 1.5e-104 383.3 246 78.5
Cpa.g.sc223.13 Carica papaya HOM05D005955 ORTHO05D007633 2.6e-104 382.5 259 75.7
Cc02_g29700 Coffea canephora HOM05D005955 ORTHO05D007633 2.6e-104 382.5 234 79.5
Prupe.2G032200 Prunus persica HOM05D005955 ORTHO05D007633 2.6e-104 382.5 232 79.7
Sp5g07940 Schrenkiella parvula HOM05D005955 ORTHO05D007633 2.6e-104 382.5 261 73.9
Hma1.2p1_1251F.1_g270440 Hydrangea macrophylla HOM05D005955 ORTHO05D007633 3.4e-104 382.1 249 76.7
VMungo1080G1708 Vigna mungo HOM05D005955 ORTHO05D007633 3.4e-104 382.1 229 80.3
CSS0025918 Camellia sinensis var. sinensis HOM05D005955 ORTHO05D007633 4.4e-104 381.7 237 78.5
Gorai.012G017000 Gossypium raimondii HOM05D005955 ORTHO05D007633 7.6e-104 380.9 270 73.3
Rhsim01G0123700 Rhododendron simsii HOM05D005955 ORTHO05D007633 7.6e-104 380.9 260 73.5
TAR369G0753 Trochodendron aralioides HOM05D005955 ORTHO05D007633 9.9e-104 380.6 259 74.1
BcaB02g08444 Brassica carinata HOM05D005955 ORTHO05D007633 1.7e-103 379.8 259 73.7
Actinidia02255 Actinidia chinensis HOM05D005955 ORTHO05D007633 2.2e-103 379.4 262 73.7
A04p05350 Brassica napus HOM05D005955 ORTHO05D007633 2.2e-103 379.4 256 73.8
MBI13_g36285_MAGBIO Magnolia biondii HOM05D005955 ORTHO05D007633 2.2e-103 379.4 251 72.9
BraA04t16235Z Brassica rapa HOM05D005955 ORTHO05D007633 3.8e-103 378.6 255 74.1
vmacro12691 Vaccinium macrocarpon HOM05D005955 ORTHO05D007633 3.8e-103 378.6 251 74.9
CANSAT56G4499 Cannabis sativa HOM05D005955 ORTHO05D007633 8.4e-103 377.5 243 77.8
Gohir.D04G013700 Gossypium hirsutum HOM05D005955 ORTHO05D007633 1.1e-102 377.1 271 72.7
FvH4_7g02750 Fragaria vesca HOM05D005955 ORTHO05D007633 2.4e-102 375.9 243 75.7
FAN06G1602 Fragaria x ananassa HOM05D005955 ORTHO05D007633 2.4e-102 375.9 243 75.7
RcHm_v2.0_Chr1g0322011 Rosa chinensis HOM05D005955 ORTHO05D007633 4.2e-102 375.2 259 73.4
AL5G35530 Arabidopsis lyrata HOM05D005955 ORTHO05D007633 5.4e-102 374.8 266 71.1
FAN10G0293 Fragaria x ananassa HOM05D005955 ORTHO05D007633 5.4e-102 374.8 243 75.3
AT3G54480 Arabidopsis thaliana HOM05D005955 ORTHO05D007633 1.6e-101 373.2 268 69.4
PGR031G3892 Punica granatum HOM05D005955 ORTHO05D007633 3.5e-101 372.1 258 70.9
BcaB01g00190 Brassica carinata HOM05D005955 ORTHO05D007633 6.0e-101 371.3 253 73.9
Peaxi162Scf01732g00026 Petunia axillaris HOM05D005955 ORTHO05D007633 6.0e-101 371.3 228 78.9
Sopen11g001560 Solanum pennellii HOM05D005955 ORTHO05D007633 7.8e-101 370.9 228 76.8
A09p47410 Brassica napus HOM05D005955 ORTHO05D007633 1.0e-100 370.5 255 73.3
BcaC02g09066 Brassica carinata HOM05D005955 ORTHO05D007633 1.3e-100 370.2 258 72.5
C04p38040 Brassica napus HOM05D005955 ORTHO05D007633 1.3e-100 370.2 258 72.5
Aqoxy2G00337 Aquilegia oxysepala HOM05D005955 ORTHO05D007633 1.7e-100 369.8 247 74.5
Cfa010889 Carpinus fangiana HOM05D005955 ORTHO05D007633 1.7e-100 369.8 222 82.0
Nitab4.5_0001681g0050 Nicotiana tabacum HOM05D005955 ORTHO05D007633 1.7e-100 369.8 228 76.8
FAN03G1179 Fragaria x ananassa HOM05D005955 ORTHO05D007633 2.3e-100 369.4 256 71.1
BolC8t50576H Brassica oleracea HOM05D005955 ORTHO05D007633 3.0e-100 369.0 255 72.9
Carub.0005s2110 Capsella rubella HOM05D005955 ORTHO05D007633 3.9e-100 368.6 246 73.6
Sed0001833 Sechium edule HOM05D005955 ORTHO05D007633 3.9e-100 368.6 233 77.3
Solyc11g005590.1 Solanum lycopersicum HOM05D005955 ORTHO05D007633 3.9e-100 368.6 228 75.9
C08p29670 Brassica napus HOM05D005955 ORTHO05D007633 5.1e-100 368.2 255 72.5
AUR62026845 Chenopodium quinoa HOM05D005955 ORTHO05D007633 6.6e-100 367.9 252 72.2
PGSC0003DMG401003979 Solanum tuberosum HOM05D005955 ORTHO05D007633 2.5e-99 365.9 228 75.9
EL10Ac2g02824 Beta vulgaris HOM05D005955 ORTHO05D007633 4.3e-99 365.2 261 70.9
TPR.G17810 Trifolium pratense HOM05D005955 ORTHO05D007633 4.3e-99 365.2 275 66.5
CsaV3_5G036650 Cucumis sativus L. HOM05D005955 ORTHO05D007633 1.3e-98 363.6 260 70.4
SGA_v2.0_scaffold232G43514 Striga asiatica HOM05D005955 ORTHO05D007633 1.3e-98 363.6 257 71.2
ClCG05G026720 Citrullus lanatus HOM05D005955 ORTHO05D007633 2.1e-98 362.8 260 70.4
ECA248G0357 Erigeron canadensis HOM05D005955 ORTHO05D007633 4.8e-98 361.7 260 70.0
HanXRQChr11g0341831 Helianthus annuus HOM05D005955 ORTHO05D007633 4.8e-98 361.7 241 72.6
Migut.N01830 Erythranthe guttata HOM05D005955 ORTHO05D007633 8.1e-98 360.9 246 73.2
Migut.O00720 Erythranthe guttata HOM05D005955 ORTHO05D007633 4.0e-97 358.6 246 72.8
MSTRG.5061 Avicennia marina HOM05D005955 ORTHO05D007633 5.3e-97 358.2 258 70.2
COL.COLO4_21458 Corchorus olitorius HOM05D005955 ORTHO05D007633 2.2e-95 352.8 208 82.7
PSO339G4535 Papaver somniferum HOM05D005955 ORTHO05D007633 6.4e-95 351.3 268 67.5
PSO384G0859 Papaver somniferum HOM05D005955 ORTHO05D007633 4.2e-94 348.6 269 66.5
unitig_8.g4774 Utricularia gibba HOM05D005955 ORTHO05D007633 2.7e-93 345.9 229 73.8
Zm00001eb329830 Zea mays HOM05D005955 ORTHO05D007633 2.7e-93 345.9 229 70.3
HPP92_025011 Vanilla planifolia HOM05D005955 ORTHO05D007633 6.0e-93 344.7 241 67.6
Ah.10g030640 Amaranthus hybridus HOM05D000390 ORTHO05D000577 1.3e-92 343.6 243 72.4
Hund15721 Selenicereus undatus HOM05D005955 ORTHO05D007633 1.3e-92 343.6 306 59.5
Lj3g0013196 Lotus japonicus HOM05D005955 ORTHO05D007633 1.1e-91 340.5 233 71.7
CSS0041352 Camellia sinensis var. sinensis HOM05D005955 ORTHO05D007633 3.3e-91 339.0 212 77.8
Nitab4.5_0000320g0120 Nicotiana tabacum HOM05D005955 ORTHO05D007633 7.4e-91 337.8 296 58.8
ATR0075G002 Amborella trichopoda HOM05D005955 ORTHO05D007633 2.8e-90 335.9 236 69.5
DCAR_031830 Daucus carota HOM05D005955 ORTHO05D007633 3.1e-89 332.4 210 74.8
Lsat_1_v5_gn_1_114801 Lactuca sativa HOM05D005955 ORTHO05D007633 3.1e-89 332.4 246 68.7
Lj7A580T60 Lonicera japonica HOM05D005955 ORTHO05D007633 4.0e-89 332.0 215 75.8
Sc10g0004360 Simmondsia chinensis HOM05D005955 ORTHO05D007633 5.3e-89 331.6 213 75.1
Atru.chr12.1174 Acer truncatum HOM05D005955 ORTHO05D007633 2.6e-88 329.3 174 95.4
Oeu015683.2 Olea europaea HOM05D005955 ORTHO05D007633 4.5e-88 328.6 211 77.3
CAN.G476.5 Capsicum annuum HOM05D005955 ORTHO05D007633 8.4e-87 324.3 208 73.1
MELO3C012462.2 Cucumis melo HOM05D005955 ORTHO05D007633 4.2e-86 322.0 218 72.9
Nn2g14899 Nelumbo nucifera HOM05D005955 ORTHO05D007633 1.6e-85 320.1 202 77.7
Hma1.2p1_1251F.1_g270450 Hydrangea macrophylla HOM05D005955 ORTHO05D007633 1.3e-84 317.0 199 78.4
arahy.Tifrunner.gnm1.ann1.NJCB22 Arachis hypogaea HOM05D005955 ORTHO05D007633 3.8e-79 298.9 343 51.9
Os07g0659700 Oryza sativa ssp. japonica HOM05D005955 ORTHO05D007633 5.1e-76 288.5 201 68.2
Dinv09283 Davidia involucrata HOM05D005955 ORTHO05D007633 7.2e-70 268.1 167 79.6
SEGI_28535 Sequoiadendron giganteum HOM05D005955 ORTHO05D007633 4.6e-69 265.4 226 60.2
AagrBONN_evm.TU.Sc2ySwM_344.4523 Anthoceros agrestis HOM05D005955 ORTHO05D007633 2.6e-64 249.6 231 53.2
CDE12G0962 Ceratophyllum demersum HOM05D005955 ORTHO05D007633 7.2e-62 241.5 146 77.4
SMO172G0212 Selaginella moellendorffii HOM05D005955 ORTHO05D007633 1.6e-61 240.4 235 53.2
Pp3c5_2560 Physcomitrium patens HOM05D005955 ORTHO05D007633 5.1e-60 235.3 240 52.1
Manes.08G167250 Manihot esculenta HOM05D005955 ORTHO05D007633 1.5e-51 207.2 133 76.7
CBR_g30624 Chara braunii HOM05D005955 ORTHO05D007633 2.6e-51 206.5 251 45.0
BraA09t40201Z Brassica rapa HOM05D005955 ORTHO05D007633 2.2e-50 203.4 146 71.9
BolC8t50572H Brassica oleracea HOM05D005955 ORTHO05D007633 1.4e-49 200.7 146 70.5
Ciclev10002701m.g Citrus clementina HOM05D005955 ORTHO05D007633 3.1e-49 199.5 175 59.4
BolC8t50570H Brassica oleracea HOM05D005955 ORTHO05D007633 7.0e-49 198.4 146 69.9
AUR62037202 Chenopodium quinoa HOM05D005955 ORTHO05D007633 7.0e-49 198.4 137 71.5
AUR62037203 Chenopodium quinoa HOM05D005955 ORTHO05D007633 7.5e-43 178.3 115 73.0
Manes.11G001251 Manihot esculenta HOM05D005955 ORTHO05D007633 1.4e-41 174.1 114 75.4
CARHR164380 Cardamine hirsuta HOM05D005955 ORTHO05D007633 2.0e-40 170.2 123 69.1
Psat7g193960 Pisum sativum HOM05D005955 ORTHO05D007633 8.0e-37 158.3 96 79.2
CANSAT01G1797 Cannabis sativa HOM05D005955 ORTHO05D007633 1.8e-33 147.1 95 76.8
C08p29620 Brassica napus HOM05D005955 ORTHO05D007633 2.9e-31 139.8 75 86.7
Nn8g40481 Nelumbo nucifera HOM05D005955 ORTHO05D007633 2.8e-26 123.2 102 61.8
Migut.N01795 Erythranthe guttata HOM05D005955 ORTHO05D007633 1.5e-22 110.9 111 55.9
TPR.G7208 Trifolium pratense HOM05D005955 ORTHO05D007633 2.0e-16 90.5 47 80.9
BcaC08g45413 Brassica carinata HOM05D005955 ORTHO05D007633 3.6e-13 79.7 114 44.7
PRCOL_00001745 Prasinoderma coloniale HOM05D005955 ORTHO05D007633 2.3e-12 77.0 183 29.0
BcaB05g22681 Brassica carinata HOM05D005955 ORTHO05D007633 3.1e-12 76.6 114 43.9


User provided reference genes

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