Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr12.137 Acer truncatum HOM05D002744 ORTHO05D006546 1.0e-50 203.4 125 100.0
Ciclev10031901m.g Citrus clementina HOM05D002744 ORTHO05D006546 1.2e-19 100.1 56 89.3
Cc02_g05710 Coffea canephora HOM05D002744 ORTHO05D006546 2.1e-19 99.4 56 85.7
TWI56G0434 Tripterygium wilfordii HOM05D002744 ORTHO05D006546 2.8e-19 99.0 56 87.5
FAN10G0428 Fragaria x ananassa HOM05D002744 ORTHO05D006546 4.7e-19 98.2 56 85.7
PGSC0003DMG400024457 Solanum tuberosum HOM05D002744 ORTHO05D006546 1.1e-18 97.1 56 83.9
Hma1.2p1_1240F.1_g269620 Hydrangea macrophylla HOM05D002744 ORTHO05D006546 1.8e-18 96.3 56 83.9
Dinv21810 Davidia involucrata HOM05D002744 ORTHO05D006546 2.3e-18 95.9 56 80.4
FvH4_7g25510 Fragaria vesca HOM05D002744 ORTHO05D006546 2.3e-18 95.9 56 82.1
FAN01G1994 Fragaria x ananassa HOM05D002744 ORTHO05D006546 2.3e-18 95.9 56 82.1
FAN03G1008 Fragaria x ananassa HOM05D002744 ORTHO05D006546 2.3e-18 95.9 56 82.1
FAN06G0491 Fragaria x ananassa HOM05D002744 ORTHO05D006546 2.3e-18 95.9 56 82.1
Manes.07G139400 Manihot esculenta HOM05D002744 ORTHO05D006546 2.3e-18 95.9 56 83.9
Peaxi162Scf00284g00133 Petunia axillaris HOM05D002744 ORTHO05D006546 2.3e-18 95.9 55 83.6
Lj1C963G12 Lonicera japonica HOM05D002744 ORTHO05D006546 3.1e-18 95.5 56 82.1
Nitab4.5_0000263g0070 Nicotiana tabacum HOM05D002744 ORTHO05D006546 4.0e-18 95.1 56 80.4
Nitab4.5_0000928g0070 Nicotiana tabacum HOM05D002744 ORTHO05D006546 4.0e-18 95.1 56 80.4
Oeu026182.1 Olea europaea HOM05D002744 ORTHO05D006546 4.0e-18 95.1 56 82.1
RcHm_v2.0_Chr1g0371491 Rosa chinensis HOM05D002744 ORTHO05D006546 4.0e-18 95.1 56 80.4
Haze_17322 Corylus avellana HOM05D002744 ORTHO05D006546 5.2e-18 94.7 56 83.9
Rhsim09G0183300 Rhododendron simsii HOM05D002744 ORTHO05D006546 5.2e-18 94.7 56 80.4
SalBow1G3835 Salvia bowleyana HOM05D002744 ORTHO05D006546 5.2e-18 94.7 56 80.4
SalBow8G2269 Salvia bowleyana HOM05D002744 ORTHO05D006546 5.2e-18 94.7 56 80.4
SalBow8G4474 Salvia bowleyana HOM05D002744 ORTHO05D006546 5.2e-18 94.7 56 80.4
vmacro09982 Vaccinium macrocarpon HOM05D002744 ORTHO05D006546 6.8e-18 94.4 56 78.6
BcaC02g12712 Brassica carinata HOM05D002744 ORTHO05D006546 8.9e-18 94.0 55 83.6
CAN.G39.17 Capsicum annuum HOM05D002744 ORTHO05D006546 8.9e-18 94.0 55 83.6
MSTRG.5049 Avicennia marina HOM05D002744 ORTHO05D006546 1.2e-17 93.6 56 78.6
CSS0017108 Camellia sinensis var. sinensis HOM05D002744 ORTHO05D006546 1.2e-17 93.6 56 78.6
CSS0032617 Camellia sinensis var. sinensis HOM05D002744 ORTHO05D006546 1.2e-17 93.6 56 78.6
CiPaw.02G197400 Carya illinoinensis HOM05D002744 ORTHO05D006546 1.2e-17 93.6 56 83.9
Migut.N01809 Erythranthe guttata HOM05D002744 ORTHO05D006546 1.2e-17 93.6 56 80.4
Phvul.008G258300 Phaseolus vulgaris HOM05D002744 ORTHO05D006546 1.2e-17 93.6 56 83.9
Thecc.10G007000 Theobroma cacao HOM05D002744 ORTHO05D006546 1.2e-17 93.6 56 78.6
VMungo0647G1938 Vigna mungo HOM05D002744 ORTHO05D006546 1.2e-17 93.6 56 83.9
GSVIVG01032722001 Vitis vinifera HOM05D002744 ORTHO05D006546 1.2e-17 93.6 55 81.8
arahy.Tifrunner.gnm1.ann1.G9S3DZ Arachis hypogaea HOM05D002744 ORTHO05D006546 1.5e-17 93.2 56 80.4
arahy.Tifrunner.gnm1.ann1.T368MT Arachis hypogaea HOM05D002744 ORTHO05D006546 1.5e-17 93.2 56 80.4
DCAR_011892 Daucus carota HOM05D002744 ORTHO05D006546 1.5e-17 93.2 55 80.0
Solyc02g068420.4 Solanum lycopersicum HOM05D002744 ORTHO05D006546 1.5e-17 93.2 57 82.5
MELO3C020109.2 Cucumis melo HOM05D002744 ORTHO05D006546 2.0e-17 92.8 56 82.1
Lj1g0011333 Lotus japonicus HOM05D002744 ORTHO05D006546 2.0e-17 92.8 56 82.1
LjContig00357g0012394 Lotus japonicus HOM05D002744 ORTHO05D006546 2.0e-17 92.8 56 82.1
CANSAT56G2377 Cannabis sativa HOM05D002744 ORTHO05D006546 2.6e-17 92.4 56 80.4
CsaV3_5G010730 Cucumis sativus L. HOM05D002744 ORTHO05D006546 2.6e-17 92.4 56 82.1
Glyma.02G230100 Glycine max HOM05D002744 ORTHO05D006546 2.6e-17 92.4 56 82.1
Glyma.14G196400 Glycine max HOM05D002744 ORTHO05D006546 2.6e-17 92.4 56 82.1
Sed0016960 Sechium edule HOM05D002744 ORTHO05D006546 2.6e-17 92.4 56 82.1
QL08p064289 Quercus lobata HOM05D002744 ORTHO05D006546 3.4e-17 92.0 55 81.8
ClCG00G004700 Citrullus lanatus HOM05D002744 ORTHO05D006546 4.4e-17 91.7 56 80.4
ClCG06G010230 Citrullus lanatus HOM05D002744 ORTHO05D006546 4.4e-17 91.7 56 80.4
Prupe.2G259600 Prunus persica HOM05D002744 ORTHO05D006546 4.4e-17 91.7 56 80.4
A05p01680 Brassica napus HOM05D002744 ORTHO05D006546 5.8e-17 91.3 56 78.6
Gohir.D10G253000 Gossypium hirsutum HOM05D002744 ORTHO05D006546 5.8e-17 91.3 56 76.8
Gorai.011G293300 Gossypium raimondii HOM05D002744 ORTHO05D006546 5.8e-17 91.3 56 76.8
Medtr5g083780 Medicago truncatula HOM05D002744 ORTHO05D006546 5.8e-17 91.3 56 80.4
Potri.008G075700 Populus trichocarpa HOM05D002744 ORTHO05D006546 5.8e-17 91.3 56 78.6
Sopen02g017560 Solanum pennellii HOM05D002744 ORTHO05D006546 5.8e-17 91.3 56 82.1
PGSC0003DMG400009431 Solanum tuberosum HOM05D002744 ORTHO05D006546 5.8e-17 91.3 56 82.1
Ca_06017_v3 Cicer arietinum L. HOM05D002744 ORTHO05D006546 7.5e-17 90.9 56 80.4
Ca_27928_v3 Cicer arietinum L. HOM05D002744 ORTHO05D006546 7.5e-17 90.9 56 80.4
ClCG07G004810 Citrullus lanatus HOM05D002744 ORTHO05D006546 9.8e-17 90.5 56 78.6
THA.LOC104814944 Tarenaya hassleriana HOM05D002744 ORTHO05D006546 9.8e-17 90.5 56 76.8
THA.LOC104824347 Tarenaya hassleriana HOM05D002744 ORTHO05D006546 9.8e-17 90.5 56 76.8
AL4G38260 Arabidopsis lyrata HOM05D002744 ORTHO05D006546 1.3e-16 90.1 55 78.2
COL.COLO4_25825 Corchorus olitorius HOM05D002744 ORTHO05D006546 1.3e-16 90.1 56 78.6
Psat0s1511g0040 Pisum sativum HOM05D002744 ORTHO05D006546 1.3e-16 90.1 56 78.6
Sabra08G0056300 Salix brachista HOM05D002744 ORTHO05D006546 1.3e-16 90.1 56 76.8
Duzib106G0255 Durio zibethinus HOM05D002744 ORTHO05D006546 1.7e-16 89.7 56 75.0
Actinidia00987 Actinidia chinensis HOM05D002744 ORTHO05D006546 2.2e-16 89.4 56 82.1
BraA05t19165Z Brassica rapa HOM05D002744 ORTHO05D006546 2.2e-16 89.4 55 78.2
Gohir.A10G240800 Gossypium hirsutum HOM05D002744 ORTHO05D006546 2.2e-16 89.4 56 75.0
HanXRQChr10g0309081 Helianthus annuus HOM05D002744 ORTHO05D006546 2.2e-16 89.4 53 77.4
Aa31LG5G19130 Aethionema arabicum HOM05D002744 ORTHO05D006546 2.9e-16 89.0 56 76.8
C04p01940 Brassica napus HOM05D002744 ORTHO05D006546 2.9e-16 89.0 56 75.0
Lalb_Chr17g0336941 Lupinus albus HOM05D002744 ORTHO05D006546 2.9e-16 89.0 56 76.8
Thhalv10016839m.g Eutrema salsugineum HOM05D002744 ORTHO05D006546 3.7e-16 88.6 55 76.4
Lsat_1_v5_gn_2_125961 Lactuca sativa HOM05D002744 ORTHO05D006546 3.7e-16 88.6 53 77.4
MD07G1229400 Malus domestica HOM05D002744 ORTHO05D006546 3.7e-16 88.6 56 76.8
PGR044G1552 Punica granatum HOM05D002744 ORTHO05D006546 3.7e-16 88.6 56 75.0
Aqoxy2G00754 Aquilegia oxysepala HOM05D002744 ORTHO05D006546 4.9e-16 88.2 55 76.4
BolC4t21844H Brassica oleracea HOM05D002744 ORTHO05D006546 4.9e-16 88.2 55 76.4
Eucgr.J00153 Eucalyptus grandis HOM05D002744 ORTHO05D006546 4.9e-16 88.2 56 76.8
Sp4g22770 Schrenkiella parvula HOM05D002744 ORTHO05D006546 4.9e-16 88.2 55 78.2
SGA_v2.0_scaffold5G02937 Striga asiatica HOM05D000129 ORTHO05D000144 4.9e-16 88.2 53 79.2
ECA238G3482 Erigeron canadensis HOM05D002744 ORTHO05D006546 6.4e-16 87.8 53 77.4
A04p30810 Brassica napus HOM05D002744 ORTHO05D006546 8.3e-16 87.4 56 76.8
C04p68230 Brassica napus HOM05D002744 ORTHO05D006546 8.3e-16 87.4 56 76.8
MBI16_g02735_MAGBIO Magnolia biondii HOM05D002744 ORTHO05D006546 8.3e-16 87.4 53 77.4
BcaB06g29140 Brassica carinata HOM05D002744 ORTHO05D006546 1.1e-15 87.0 55 78.2
BraA04t18540Z Brassica rapa HOM05D002744 ORTHO05D006546 1.1e-15 87.0 55 78.2
Carub.0004s2268 Capsella rubella HOM05D002744 ORTHO05D006546 1.4e-15 86.7 55 74.5
CDE04G1223 Ceratophyllum demersum HOM05D002744 ORTHO05D006546 1.4e-15 86.7 53 75.5
AT2G40430 Arabidopsis thaliana HOM05D002744 ORTHO05D006546 1.9e-15 86.3 55 72.7
TAR623G1472 Trochodendron aralioides HOM05D002744 ORTHO05D006546 2.4e-15 85.9 53 75.5
BolC4t28327H Brassica oleracea HOM05D002744 ORTHO05D006546 3.2e-15 85.5 55 76.4
MD01G1161500 Malus domestica HOM05D002744 ORTHO05D006546 3.2e-15 85.5 56 75.0
CDE03G0451 Ceratophyllum demersum HOM05D002744 ORTHO05D006546 4.1e-15 85.1 53 73.6
TPR.G14721 Trifolium pratense HOM05D002744 ORTHO05D006546 4.1e-15 85.1 56 75.0
SHI18673 Sapria himalayana HOM05D002744 ORTHO05D006546 5.4e-15 84.7 56 69.6
HanXRQChr07g0186551 Helianthus annuus HOM05D002744 ORTHO05D006546 9.2e-15 84.0 56 73.2
PSO210G7497 Papaver somniferum HOM05D002744 ORTHO05D006546 1.2e-14 83.6 55 70.9
PSO832G1082 Papaver somniferum HOM05D002744 ORTHO05D006546 1.2e-14 83.6 55 70.9
CARHR135540 Cardamine hirsuta HOM05D002744 ORTHO05D006546 2.7e-14 82.4 52 75.0
Os05g0144200 Oryza sativa ssp. japonica HOM05D002744 ORTHO05D006546 4.6e-14 81.6 54 70.4
Nn2g11076 Nelumbo nucifera HOM05D002744 ORTHO05D006546 7.8e-14 80.9 52 75.0
BcaC02g07313 Brassica carinata HOM05D002744 ORTHO05D006546 1.0e-13 80.5 51 76.5
Zm00001eb417890 Zea mays HOM05D002744 ORTHO05D006546 1.3e-13 80.1 54 68.5
HPP92_001733 Vanilla planifolia HOM05D002744 ORTHO05D006546 1.9e-12 76.3 57 64.9
Mapoly0001s0132 Marchantia polymorpha HOM05D002744 ORTHO05D006546 4.3e-12 75.1 56 62.5
SEGI_20256 Sequoiadendron giganteum HOM05D002744 ORTHO05D006546 2.3e-10 69.3 51 60.8
Ah.05g176210 Amaranthus hybridus HOM05D002744 ORTHO05D006546 6.8e-10 67.8 55 67.3
Pp3c22_7700 Physcomitrium patens HOM05D002744 ORTHO05D006546 1.5e-09 66.6 58 55.2
Sc10g0002810 Simmondsia chinensis HOM05D002744 ORTHO05D006546 5.8e-09 64.7 55 63.6
Hund13511 Selenicereus undatus HOM05D002744 ORTHO05D006546 7.5e-09 64.3 55 60.0
CBR_g88544 Chara braunii HOM05D002744 ORTHO05D006546 9.9e-09 63.9 54 53.7
AUR62012335 Chenopodium quinoa HOM05D002744 ORTHO05D006546 9.9e-09 63.9 55 61.8
AUR62022979 Chenopodium quinoa HOM05D002744 ORTHO05D006546 1.3e-08 63.5 55 61.8
EL10Ac2g04290 Beta vulgaris HOM05D002744 ORTHO05D006546 1.7e-08 63.2 55 61.8
Actinidia07807 Actinidia chinensis HOM05D002744 ORTHO05D006546 2.9e-08 62.4 55 52.7
unitig_27.g25095 Utricularia gibba HOM05D002744 ORTHO05D006546 1.4e-07 60.1 55 58.2
Solyc06g050820.3 Solanum lycopersicum HOM05D002744 ORTHO05D006546 3.5e-06 55.5 35 71.4


User provided reference genes

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