Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr12.1305 Acer truncatum HOM05D004854 ORTHO05D005854 6.8e-31 137.5 121 100.0
Ciclev10002863m.g Citrus clementina HOM05D004854 ORTHO05D005854 1.0e-26 123.6 122 83.6
Actinidia29956 Actinidia chinensis HOM05D004854 ORTHO05D005854 5.6e-25 117.9 71 83.1
BcaB05g22334 Brassica carinata HOM05D004854 ORTHO05D005854 5.6e-25 117.9 70 84.3
AL8G33260 Arabidopsis lyrata HOM05D004854 ORTHO05D005854 7.3e-25 117.5 70 84.3
BcaC03g14166 Brassica carinata HOM05D004854 ORTHO05D005854 7.3e-25 117.5 70 84.3
BcaC04g19981 Brassica carinata HOM05D004854 ORTHO05D005854 7.3e-25 117.5 70 84.3
QL11p004841 Quercus lobata HOM05D004854 ORTHO05D005854 1.6e-24 116.3 120 83.3
BraA02t05931Z Brassica rapa HOM05D004854 ORTHO05D005854 2.1e-24 115.9 70 82.9
TWI38G2070 Tripterygium wilfordii HOM05D004854 ORTHO05D005854 2.1e-24 115.9 70 80.0
CiPaw.08G034100 Carya illinoinensis HOM05D004854 ORTHO05D005854 2.8e-24 115.5 70 82.9
TWI38G1790 Tripterygium wilfordii HOM05D004854 ORTHO05D005854 2.8e-24 115.5 71 80.3
A02p08620 Brassica napus HOM05D004854 ORTHO05D005854 3.6e-24 115.2 69 84.1
CSS0022850 Camellia sinensis var. sinensis HOM05D004854 ORTHO05D005854 4.7e-24 114.8 67 88.1
TWI18G0069 Tripterygium wilfordii HOM05D004854 ORTHO05D005854 6.2e-24 114.4 69 81.2
Migut.J00819 Erythranthe guttata HOM05D004854 ORTHO05D005854 1.4e-23 113.2 71 77.5
Sp6g19020 Schrenkiella parvula HOM05D004854 ORTHO05D005854 1.4e-23 113.2 70 81.4
vmacro20836 Vaccinium macrocarpon HOM05D004854 ORTHO05D005854 1.8e-23 112.8 69 81.2
CANSAT11G1984 Cannabis sativa HOM05D004854 ORTHO05D005854 2.3e-23 112.5 69 82.6
SGA_v2.0_scaffold21G09635 Striga asiatica HOM05D004854 ORTHO05D005854 3.1e-23 112.1 121 80.2
THA.LOC104813509 Tarenaya hassleriana HOM05D004854 ORTHO05D005854 3.1e-23 112.1 70 78.6
C02p14390 Brassica napus HOM05D004854 ORTHO05D005854 5.2e-23 111.3 68 80.9
BolC2t07563H Brassica oleracea HOM05D004854 ORTHO05D005854 5.2e-23 111.3 68 80.9
BolC9t57762H Brassica oleracea HOM05D004854 ORTHO05D005854 5.2e-23 111.3 68 80.9
BraA10t43555Z Brassica rapa HOM05D004854 ORTHO05D005854 5.2e-23 111.3 68 80.9
PGR044G2628 Punica granatum HOM05D004854 ORTHO05D005854 5.2e-23 111.3 68 80.9
PGR109G0004 Punica granatum HOM05D004854 ORTHO05D005854 5.2e-23 111.3 68 80.9
Sed0005886 Sechium edule HOM05D004854 ORTHO05D005854 5.2e-23 111.3 70 80.0
Sc26g0002890 Simmondsia chinensis HOM05D004854 ORTHO05D005854 5.2e-23 111.3 71 78.9
ClCG11G011930 Citrullus lanatus HOM05D004854 ORTHO05D005854 6.8e-23 110.9 70 78.6
Peaxi162Scf00324g00719 Petunia axillaris HOM05D004854 ORTHO05D005854 6.8e-23 110.9 68 82.4
Nitab4.5_0000074g0010 Nicotiana tabacum HOM05D004854 ORTHO05D005854 8.9e-23 110.5 68 82.4
Nitab4.5_0012849g0010 Nicotiana tabacum HOM05D004854 ORTHO05D005854 8.9e-23 110.5 68 82.4
Actinidia39348 Actinidia chinensis HOM05D000406 ORTHO05D003425 1.2e-22 110.2 67 83.6
PGSC0003DMG400008513 Solanum tuberosum HOM05D004854 ORTHO05D005854 1.2e-22 110.2 68 80.9
THA.LOC104811780 Tarenaya hassleriana HOM05D004854 ORTHO05D005854 1.2e-22 110.2 70 77.1
AT4G25890 Arabidopsis thaliana HOM05D004854 ORTHO05D005854 1.5e-22 109.8 70 77.1
Manes.06G021300 Manihot esculenta HOM05D004854 ORTHO05D005854 1.5e-22 109.8 69 82.6
Sed0001835 Sechium edule HOM05D004854 ORTHO05D005854 1.5e-22 109.8 70 78.6
MELO3C003999.2 Cucumis melo HOM05D004854 ORTHO05D005854 2.0e-22 109.4 70 77.1
Thhalv10015037m.g Eutrema salsugineum HOM05D004854 ORTHO05D005854 2.0e-22 109.4 70 78.6
Oeu000974.1 Olea europaea HOM05D004854 ORTHO05D005854 2.0e-22 109.4 71 77.5
A10p14720 Brassica napus HOM05D004854 ORTHO05D005854 2.6e-22 109.0 68 79.4
C09p49130 Brassica napus HOM05D004854 ORTHO05D005854 2.6e-22 109.0 68 79.4
Carub.0008s1780 Capsella rubella HOM05D004854 ORTHO05D005854 2.6e-22 109.0 70 77.1
DCAR_003035 Daucus carota HOM05D004854 ORTHO05D005854 2.6e-22 109.0 71 78.9
Dinv25401 Davidia involucrata HOM05D004854 ORTHO05D005854 2.6e-22 109.0 69 79.7
Thhalv10026301m.g Eutrema salsugineum HOM05D004854 ORTHO05D005854 2.6e-22 109.0 71 74.6
AL7G27120 Arabidopsis lyrata HOM05D004854 ORTHO05D005854 3.4e-22 108.6 70 75.7
CsaV3_2G008580 Cucumis sativus L. HOM05D004854 ORTHO05D005854 3.4e-22 108.6 69 78.3
Solyc07g009330.4 Solanum lycopersicum HOM05D004854 ORTHO05D005854 3.4e-22 108.6 68 79.4
TAR625G0051 Trochodendron aralioides HOM05D004854 ORTHO05D005854 3.4e-22 108.6 67 82.1
CDE05G0266 Ceratophyllum demersum HOM05D000177 ORTHO05D008165 4.4e-22 108.2 67 80.6
CDE05G2165 Ceratophyllum demersum HOM05D004854 ORTHO05D005854 4.4e-22 108.2 67 80.6
Eucgr.C02261 Eucalyptus grandis HOM05D004854 ORTHO05D005854 4.4e-22 108.2 67 79.1
Eucgr.C02263 Eucalyptus grandis HOM05D004854 ORTHO05D005854 4.4e-22 108.2 67 79.1
MSTRG.19386 Avicennia marina HOM05D004854 ORTHO05D005854 5.8e-22 107.8 71 76.1
Potri.009G032600 Populus trichocarpa HOM05D004854 ORTHO05D005854 5.8e-22 107.8 71 77.5
AT5G57290 Arabidopsis thaliana HOM05D004854 ORTHO05D005854 7.5e-22 107.5 65 81.5
MSTRG.26532 Avicennia marina HOM05D004854 ORTHO05D005854 9.8e-22 107.1 71 73.2
Cpa.g.sc95.32 Carica papaya HOM05D004854 ORTHO05D005854 9.8e-22 107.1 71 73.2
MBI13_g31550_MAGBIO Magnolia biondii HOM05D004854 ORTHO05D005854 9.8e-22 107.1 68 79.4
PSO596G0050 Papaver somniferum HOM05D004854 ORTHO05D005854 9.8e-22 107.1 121 78.5
Rhsim01G0120500 Rhododendron simsii HOM05D004854 ORTHO05D005854 9.8e-22 107.1 67 79.1
Sopen07g005080 Solanum pennellii HOM05D004854 ORTHO05D005854 9.8e-22 107.1 68 77.9
Oeu064534.1 Olea europaea HOM05D004854 ORTHO05D005854 1.3e-21 106.7 70 77.1
PSO423G0276 Papaver somniferum HOM05D004854 ORTHO05D005854 1.3e-21 106.7 71 74.6
Aa31LG3G13170 Aethionema arabicum HOM05D004854 ORTHO05D005854 1.7e-21 106.3 70 75.7
Dinv26446 Davidia involucrata HOM05D004854 ORTHO05D005854 2.2e-21 105.9 68 76.5
Eucgr.A01410 Eucalyptus grandis HOM05D004854 ORTHO05D005854 2.2e-21 105.9 67 77.6
Gohir.A05G003400 Gossypium hirsutum HOM05D004854 ORTHO05D005854 2.2e-21 105.9 121 82.6
Gohir.D05G003800 Gossypium hirsutum HOM05D004854 ORTHO05D005854 2.2e-21 105.9 121 82.6
Gorai.009G003400 Gossypium raimondii HOM05D004854 ORTHO05D005854 2.2e-21 105.9 121 82.6
ECA247G3496 Erigeron canadensis HOM05D004854 ORTHO05D005854 2.9e-21 105.5 70 75.7
Glyma.05G174300 Glycine max HOM05D004854 ORTHO05D005854 2.9e-21 105.5 71 74.6
Sp7g23910 Schrenkiella parvula HOM05D004854 ORTHO05D005854 2.9e-21 105.5 70 72.9
Carub.0007s1506 Capsella rubella HOM05D004854 ORTHO05D005854 3.7e-21 105.1 71 73.2
Cfa013427 Carpinus fangiana HOM05D004854 ORTHO05D005854 3.7e-21 105.1 67 76.1
HanXRQChr10g0297881 Helianthus annuus HOM05D004854 ORTHO05D005854 3.7e-21 105.1 121 85.1
Prupe.1G079500 Prunus persica HOM05D004854 ORTHO05D005854 3.7e-21 105.1 70 74.3
GSVIVG01010910001 Vitis vinifera HOM05D004854 ORTHO05D005854 3.7e-21 105.1 67 77.6
SGA_v2.0_scaffold41G15867 Striga asiatica HOM05D004854 ORTHO05D005854 4.9e-21 104.8 121 83.5
CAN.G86.2 Capsicum annuum HOM05D004854 ORTHO05D005854 6.4e-21 104.4 68 76.5
Glyma.08G131500 Glycine max HOM05D004854 ORTHO05D005854 8.3e-21 104.0 71 73.2
Potri.003G010200 Populus trichocarpa HOM05D004854 ORTHO05D005854 8.3e-21 104.0 71 74.6
PGR142G3975 Punica granatum HOM05D004854 ORTHO05D005854 8.3e-21 104.0 71 73.2
CARHR271090 Cardamine hirsuta HOM05D004854 ORTHO05D005854 1.1e-20 103.6 70 74.3
Lsat_1_v5_gn_9_31040 Lactuca sativa HOM05D004854 ORTHO05D005854 1.1e-20 103.6 70 74.3
Psat7g058720 Pisum sativum HOM05D004854 ORTHO05D005854 1.1e-20 103.6 121 79.3
SHI02877 Sapria himalayana HOM05D004681 ORTHO05D005541 1.1e-20 103.6 66 78.8
Phvul.002G259300 Phaseolus vulgaris HOM05D004854 ORTHO05D005854 1.4e-20 103.2 71 69.0
Thecc.09G180300 Theobroma cacao HOM05D004854 ORTHO05D005854 1.4e-20 103.2 69 75.4
CARHR233360 Cardamine hirsuta HOM05D004854 ORTHO05D005854 1.9e-20 102.8 71 70.4
SEGI_03932 Sequoiadendron giganteum HOM05D004854 ORTHO05D005854 1.9e-20 102.8 71 70.4
VMungo0251G0447 Vigna mungo HOM05D004854 ORTHO05D005854 1.9e-20 102.8 71 69.0
Ca_17781_v3 Cicer arietinum L. HOM05D004854 ORTHO05D005854 2.4e-20 102.4 71 71.8
Oeu044701.1 Olea europaea HOM05D004854 ORTHO05D005854 2.4e-20 102.4 70 72.9
Cc06_g22110 Coffea canephora HOM05D004854 ORTHO05D005854 3.2e-20 102.1 68 75.0
Dinv25400 Davidia involucrata HOM05D004854 ORTHO05D005854 3.2e-20 102.1 66 77.3
Duzib150G0904 Durio zibethinus HOM05D004854 ORTHO05D005854 3.2e-20 102.1 68 72.1
Sabra09G0023200 Salix brachista HOM05D004854 ORTHO05D005854 3.2e-20 102.1 68 76.5
TAR636G3485 Trochodendron aralioides HOM05D004854 ORTHO05D005854 3.2e-20 102.1 60 85.0
unitig_899.g15189 Utricularia gibba HOM05D004854 ORTHO05D005854 3.2e-20 102.1 70 74.3
MD16G1253100 Malus domestica HOM05D004854 ORTHO05D005854 5.4e-20 101.3 70 70.0
BcaB08g36089 Brassica carinata HOM05D004854 ORTHO05D005854 9.2e-20 100.5 71 70.4
MD13G1245200 Malus domestica HOM05D004854 ORTHO05D005854 9.2e-20 100.5 70 70.0
RcHm_v2.0_Chr4g0400241 Rosa chinensis HOM05D004854 ORTHO05D005854 9.2e-20 100.5 67 77.6
Oeu044703.1 Olea europaea HOM05D004854 ORTHO05D005854 1.2e-19 100.1 68 73.5
AUR62026626 Chenopodium quinoa HOM05D004854 ORTHO05D005854 1.6e-19 99.8 70 74.3
AUR62034880 Chenopodium quinoa HOM05D004854 ORTHO05D005854 1.6e-19 99.8 70 74.3
Ah.05g168230 Amaranthus hybridus HOM05D004854 ORTHO05D005854 2.0e-19 99.4 70 74.3
Os06g0701400 Oryza sativa ssp. japonica HOM05D004854 ORTHO05D005854 2.0e-19 99.4 70 68.6
Zm00001eb226990 Zea mays HOM05D004854 ORTHO05D005854 2.0e-19 99.4 121 77.7
Ah.16g108570 Amaranthus hybridus HOM05D004854 ORTHO05D005854 3.5e-19 98.6 70 74.3
FAN22G0664 Fragaria x ananassa HOM05D004854 ORTHO05D005854 3.5e-19 98.6 121 82.6
Sabra03G0005200 Salix brachista HOM05D004854 ORTHO05D005854 3.5e-19 98.6 70 70.0
arahy.Tifrunner.gnm1.ann1.9B8HPN Arachis hypogaea HOM05D004854 ORTHO05D005854 6.0e-19 97.8 70 68.6
arahy.Tifrunner.gnm1.ann1.P9UE85 Arachis hypogaea HOM05D004854 ORTHO05D005854 6.0e-19 97.8 70 68.6
Os01g0231700 Oryza sativa ssp. japonica HOM05D004854 ORTHO05D005854 6.0e-19 97.8 70 67.1
FvH4_4g07630 Fragaria vesca HOM05D004854 ORTHO05D005854 1.0e-18 97.1 67 73.1
FAN07G2001 Fragaria x ananassa HOM05D004854 ORTHO05D005854 1.0e-18 97.1 67 73.1
FAN12G2445 Fragaria x ananassa HOM05D004854 ORTHO05D005854 1.0e-18 97.1 67 73.1
FAN17G2475 Fragaria x ananassa HOM05D004854 ORTHO05D005854 1.0e-18 97.1 67 73.1
Medtr8g089790 Medicago truncatula HOM05D004854 ORTHO05D005854 1.0e-18 97.1 71 64.8
PSO596G0067 Papaver somniferum HOM05D004854 ORTHO05D005854 1.3e-18 96.7 71 69.0
SalBow5G3614 Salvia bowleyana HOM05D004854 ORTHO05D005854 1.3e-18 96.7 70 70.0
Lj4g0022898 Lotus japonicus HOM05D004854 ORTHO05D005854 1.7e-18 96.3 70 67.1
Lalb_Chr13g0295841 Lupinus albus HOM05D004854 ORTHO05D005854 2.3e-18 95.9 70 68.6
arahy.Tifrunner.gnm1.ann1.P39ID1 Arachis hypogaea HOM05D004854 ORTHO05D005854 5.0e-18 94.7 71 66.2
Hund26676 Selenicereus undatus HOM05D004854 ORTHO05D005854 5.0e-18 94.7 71 64.8
PSO423G0052 Papaver somniferum HOM05D004854 ORTHO05D005854 6.6e-18 94.4 71 67.6
Thecc.01G294400 Theobroma cacao HOM05D004854 ORTHO05D005854 6.6e-18 94.4 71 69.0
Lalb_Chr07g0185421 Lupinus albus HOM05D004854 ORTHO05D005854 8.6e-18 94.0 69 65.2
RcHm_v2.0_Chr1g0341131 Rosa chinensis HOM05D004854 ORTHO05D005854 8.6e-18 94.0 67 73.1
HPP92_026146 Vanilla planifolia HOM05D003573 ORTHO05D004204 1.5e-17 93.2 67 70.1
arahy.Tifrunner.gnm1.ann1.XNR1AK Arachis hypogaea HOM05D004854 ORTHO05D005854 1.9e-17 92.8 69 62.3
Zm00001eb272850 Zea mays HOM05D004854 ORTHO05D005854 1.9e-17 92.8 69 66.7
arahy.Tifrunner.gnm1.ann1.90PU0B Arachis hypogaea HOM05D004854 ORTHO05D005854 2.5e-17 92.4 71 63.4
Migut.L01900 Erythranthe guttata HOM05D004854 ORTHO05D005854 2.5e-17 92.4 61 70.5
ATR0626G247 Amborella trichopoda HOM05D004854 ORTHO05D005854 4.3e-17 91.7 62 71.0
arahy.Tifrunner.gnm1.ann1.AP25S4 Arachis hypogaea HOM05D004854 ORTHO05D005854 1.2e-16 90.1 69 60.9
SGA_v2.0_scaffold46G17340 Striga asiatica HOM05D004854 ORTHO05D005854 6.2e-16 87.8 71 63.4
Lj6g0003516 Lotus japonicus HOM05D004854 ORTHO05D005854 1.1e-15 87.0 70 58.6
TPR.G6298 Trifolium pratense HOM05D004854 ORTHO05D005854 1.8e-15 86.3 68 61.8
C03p15060 Brassica napus HOM05D004854 ORTHO05D005854 1.2e-14 83.6 56 80.4
Nn2g12744 Nelumbo nucifera HOM05D004854 ORTHO05D005854 6.4e-13 77.8 46 80.4
Pp3c22_2920 Physcomitrium patens HOM05D004854 ORTHO05D005854 6.4e-13 77.8 72 59.7
arahy.Tifrunner.gnm1.ann1.63P7R9 Arachis hypogaea HOM05D000970 ORTHO05D000788 3.2e-12 75.5 53 71.7
BolC3t13948H Brassica oleracea HOM05D004854 ORTHO05D005854 7.1e-12 74.3 54 74.1
Pp3c21_16160 Physcomitrium patens HOM05D004854 ORTHO05D005854 7.1e-12 74.3 72 55.6
SMO172G0233 Selaginella moellendorffii HOM05D004854 ORTHO05D005854 7.1e-12 74.3 121 66.1
Mapoly0006s0174 Marchantia polymorpha HOM05D004854 ORTHO05D005854 3.9e-10 68.6 72 47.2
Duzib170G0267 Durio zibethinus HOM05D004854 ORTHO05D005854 6.6e-10 67.8 42 71.4
COL.COLO4_25466 Corchorus olitorius HOM05D004854 ORTHO05D005854 5.6e-09 64.7 42 69.0
Duzib168G1583 Durio zibethinus HOM05D004854 ORTHO05D005854 9.5e-09 63.9 46 60.9


User provided reference genes

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