Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr11.9 Acer truncatum HOM05D004737 ORTHO05D005623 6.4e-105 384.0 187 100.0
MELO3C005669.2 Cucumis melo HOM05D004737 ORTHO05D005623 7.5e-21 104.8 169 38.5
MD14G1103600 Malus domestica HOM05D004737 ORTHO05D005623 1.3e-20 104.0 169 39.1
Atru.chr2.2103 Acer truncatum HOM05D004737 ORTHO05D005623 2.2e-20 103.2 172 37.8
Duzib084G0936 Durio zibethinus HOM05D004737 ORTHO05D005623 2.2e-20 103.2 183 37.2
vmacro11322 Vaccinium macrocarpon HOM05D004737 ORTHO05D005623 2.9e-20 102.8 169 37.9
Dinv38949 Davidia involucrata HOM05D004737 ORTHO05D005623 3.7e-20 102.4 172 39.0
Rhsim02G0228600 Rhododendron simsii HOM05D004737 ORTHO05D005623 3.7e-20 102.4 169 38.5
MSTRG.25602 Avicennia marina HOM05D004737 ORTHO05D005623 8.3e-20 101.3 173 39.9
Atru.chr6.144 Acer truncatum HOM05D004737 ORTHO05D005623 1.4e-19 100.5 176 37.5
SalBow5G1266 Salvia bowleyana HOM05D004737 ORTHO05D005623 2.4e-19 99.8 181 39.8
Atru.chr6.169 Acer truncatum HOM05D004737 ORTHO05D005623 5.4e-19 98.6 170 35.9
Atru.chr6.77 Acer truncatum HOM05D004737 ORTHO05D005623 5.4e-19 98.6 177 36.2
SGA_v2.0_scaffold253G45138 Striga asiatica HOM05D004737 ORTHO05D005623 7.1e-19 98.2 169 40.8
CSS0013453 Camellia sinensis var. sinensis HOM05D004737 ORTHO05D005623 1.2e-18 97.4 172 38.4
COL.COLO4_34453 Corchorus olitorius HOM05D004737 ORTHO05D005623 1.2e-18 97.4 172 36.0
Thecc.03G277700 Theobroma cacao HOM05D004737 ORTHO05D005623 1.6e-18 97.1 174 35.1
Gohir.D08G200800 Gossypium hirsutum HOM05D004737 ORTHO05D005623 2.7e-18 96.3 169 36.7
Gorai.004G211600 Gossypium raimondii HOM05D004737 ORTHO05D005623 2.7e-18 96.3 169 36.7
Lj8A232T63 Lonicera japonica HOM05D004737 ORTHO05D005623 4.6e-18 95.5 169 37.3
CsaV3_5G002870 Cucumis sativus L. HOM05D004737 ORTHO05D005623 6.0e-18 95.1 169 36.7
Hma1.2p1_0896F.1_g233940 Hydrangea macrophylla HOM05D004737 ORTHO05D005623 6.0e-18 95.1 169 38.5
Sed0019193 Sechium edule HOM05D004737 ORTHO05D005623 6.0e-18 95.1 169 35.5
Atru.chr11.10 Acer truncatum HOM05D004737 ORTHO05D005623 1.0e-17 94.4 170 35.9
Prupe.5G098900 Prunus persica HOM05D004737 ORTHO05D005623 1.0e-17 94.4 169 34.9
Cc08_g14650 Coffea canephora HOM05D004737 ORTHO05D005623 3.0e-17 92.8 170 36.5
TWI38G1747 Tripterygium wilfordii HOM05D004737 ORTHO05D005623 3.0e-17 92.8 169 36.7
GSVIVG01019762001 Vitis vinifera HOM05D004737 ORTHO05D005623 3.0e-17 92.8 169 36.1
Gohir.A08G182200 Gossypium hirsutum HOM05D004737 ORTHO05D005623 3.9e-17 92.4 169 35.5
Atru.chr4.898 Acer truncatum HOM05D004737 ORTHO05D005623 5.1e-17 92.0 185 34.6
QL12p034148 Quercus lobata HOM05D004737 ORTHO05D005623 5.1e-17 92.0 169 37.3
TAR625G0056 Trochodendron aralioides HOM05D004737 ORTHO05D005623 6.6e-17 91.7 169 36.1
Atru.chr5.3476 Acer truncatum HOM05D004737 ORTHO05D005623 8.6e-17 91.3 181 34.8
QL12p034121 Quercus lobata HOM05D000005 ORTHO05D000833 8.6e-17 91.3 169 37.3
DCAR_008401 Daucus carota HOM05D004737 ORTHO05D005623 1.1e-16 90.9 136 38.2
ClCG01G002790 Citrullus lanatus HOM05D004737 ORTHO05D005623 1.5e-16 90.5 126 42.1
Eucgr.E00582 Eucalyptus grandis HOM05D004737 ORTHO05D005623 1.9e-16 90.1 173 35.8
HanXRQChr06g0165541 Helianthus annuus HOM05D004737 ORTHO05D005623 1.9e-16 90.1 181 33.1
Aqoxy6G02772 Aquilegia oxysepala HOM05D004737 ORTHO05D005623 2.5e-16 89.7 169 35.5
Nitab4.5_0010794g0020 Nicotiana tabacum HOM05D004737 ORTHO05D005623 2.5e-16 89.7 169 35.5
Nitab4.5_0001215g0220 Nicotiana tabacum HOM05D004737 ORTHO05D005623 4.3e-16 89.0 169 35.5
Peaxi162Scf00198g00034 Petunia axillaris HOM05D004737 ORTHO05D005623 5.6e-16 88.6 123 39.0
QL12p033263 Quercus lobata HOM05D004737 ORTHO05D005623 7.3e-16 88.2 169 36.1
QL12p034065 Quercus lobata HOM05D004737 ORTHO05D005623 7.3e-16 88.2 169 36.1
Aa31LG10G7820 Aethionema arabicum HOM05D004737 ORTHO05D005623 9.5e-16 87.8 182 33.0
RcHm_v2.0_Chr7g0197851 Rosa chinensis HOM05D004737 ORTHO05D005623 9.5e-16 87.8 170 35.3
PGSC0003DMG400031232 Solanum tuberosum HOM05D004737 ORTHO05D005623 2.1e-15 86.7 169 36.1
Atru.chr2.781 Acer truncatum HOM05D004737 ORTHO05D005623 2.8e-15 86.3 190 31.6
PGR042G1084 Punica granatum HOM05D004737 ORTHO05D005623 3.6e-15 85.9 170 33.5
Sc07g0009740 Simmondsia chinensis HOM05D004737 ORTHO05D005623 3.6e-15 85.9 125 41.6
Atru.chr13.1520 Acer truncatum HOM05D004737 ORTHO05D005623 4.7e-15 85.5 201 30.8
ATR0782G239 Amborella trichopoda HOM05D004737 ORTHO05D005623 4.7e-15 85.5 170 33.5
EL10Ac6g13984 Beta vulgaris HOM05D004737 ORTHO05D005623 4.7e-15 85.5 180 31.7
Glyma.01G219700 Glycine max HOM05D004737 ORTHO05D005623 6.2e-15 85.1 168 32.7
Manes.02G022400 Manihot esculenta HOM05D004737 ORTHO05D005623 8.1e-15 84.7 127 38.6
ECA246G0717 Erigeron canadensis HOM05D004737 ORTHO05D005623 1.1e-14 84.3 169 35.5
Lj2g0011086 Lotus japonicus HOM05D004737 ORTHO05D005623 1.4e-14 84.0 169 35.5
Atru.chr2.774 Acer truncatum HOM05D004737 ORTHO05D005623 1.8e-14 83.6 192 32.3
AUR62017215 Chenopodium quinoa HOM05D004737 ORTHO05D005623 1.8e-14 83.6 184 32.1
VMungo1215G1017 Vigna mungo HOM05D004737 ORTHO05D005623 1.8e-14 83.6 169 34.9
Ciclev10006013m.g Citrus clementina HOM05D004737 ORTHO05D005623 3.1e-14 82.8 125 36.0
Nn5g30495 Nelumbo nucifera HOM05D004737 ORTHO05D005623 3.1e-14 82.8 175 34.9
BcaB02g08548 Brassica carinata HOM05D004737 ORTHO05D005623 4.0e-14 82.4 181 32.6
CDE04G2100 Ceratophyllum demersum HOM05D004737 ORTHO05D005623 4.0e-14 82.4 170 33.5
FvH4_5g02300 Fragaria vesca HOM05D004737 ORTHO05D005623 4.0e-14 82.4 189 33.3
Lsat_1_v5_gn_3_7380 Lactuca sativa HOM05D004737 ORTHO05D005623 4.0e-14 82.4 136 37.5
TPR.G6698 Trifolium pratense HOM05D004737 ORTHO05D005623 4.0e-14 82.4 172 32.6
Potri.001G104800 Populus trichocarpa HOM05D004737 ORTHO05D005623 5.2e-14 82.0 169 33.7
SGA_v2.0_scaffold96G28950 Striga asiatica HOM05D004737 ORTHO05D005623 8.9e-14 81.3 187 33.7
Atru.chr1.4031 Acer truncatum HOM05D004737 ORTHO05D005623 1.2e-13 80.9 203 31.0
BcaC02g09203 Brassica carinata HOM05D004737 ORTHO05D005623 2.0e-13 80.1 175 32.0
A04p06580 Brassica napus HOM05D004737 ORTHO05D005623 2.0e-13 80.1 180 32.8
C04p40020 Brassica napus HOM05D004737 ORTHO05D005623 2.0e-13 80.1 175 32.0
BolC4t25575H Brassica oleracea HOM05D004737 ORTHO05D005623 2.0e-13 80.1 175 32.0
BraA04t16363Z Brassica rapa HOM05D004737 ORTHO05D005623 2.0e-13 80.1 180 32.8
Haze_08850 Corylus avellana HOM05D004737 ORTHO05D005623 2.0e-13 80.1 126 40.5
Haze_08864 Corylus avellana HOM05D004737 ORTHO05D005623 2.0e-13 80.1 126 40.5
Sp5g09430 Schrenkiella parvula HOM05D004737 ORTHO05D005623 2.0e-13 80.1 175 32.6
Atru.chr1.3075 Acer truncatum HOM05D004737 ORTHO05D005623 3.4e-13 79.3 170 30.0
CAN.G1149.8 Capsicum annuum HOM05D004737 ORTHO05D005623 3.4e-13 79.3 170 33.5
Solyc10g074990.2 Solanum lycopersicum HOM05D004737 ORTHO05D005623 3.4e-13 79.3 126 38.1
Sopen10g027480 Solanum pennellii HOM05D004737 ORTHO05D005623 3.4e-13 79.3 126 38.1
A07p21280 Brassica napus HOM05D004737 ORTHO05D005623 4.4e-13 79.0 176 31.8
BraA07t29816Z Brassica rapa HOM05D004737 ORTHO05D005623 4.4e-13 79.0 176 31.8
AT3G52905 Arabidopsis thaliana HOM05D004737 ORTHO05D005623 7.6e-13 78.2 175 31.4
Atru.chr1.3076 Acer truncatum HOM05D005378 ORTHO05D006986 9.9e-13 77.8 180 32.2
AL5G33690 Arabidopsis lyrata HOM05D004737 ORTHO05D005623 9.9e-13 77.8 175 31.4
Phvul.002G157400 Phaseolus vulgaris HOM05D004737 ORTHO05D005623 9.9e-13 77.8 169 32.5
Ah.02g116610 Amaranthus hybridus HOM05D000756 ORTHO05D000604 1.3e-12 77.4 155 32.9
Thhalv10010768m.g Eutrema salsugineum HOM05D004737 ORTHO05D005623 1.3e-12 77.4 175 31.4
SHI07123 Sapria himalayana HOM05D004737 ORTHO05D005623 1.3e-12 77.4 186 32.8
AUR62010668 Chenopodium quinoa HOM05D004737 ORTHO05D005623 1.7e-12 77.0 127 36.2
Hma1.2p1_0896F.1_g233950 Hydrangea macrophylla HOM05D004737 ORTHO05D005623 1.7e-12 77.0 168 35.1
CANSAT21G0205 Cannabis sativa HOM05D004737 ORTHO05D005623 4.9e-12 75.5 169 32.5
CiPaw.11G135900 Carya illinoinensis HOM05D004737 ORTHO05D005623 6.4e-12 75.1 169 32.0
PSO675G2933 Papaver somniferum HOM05D004737 ORTHO05D005623 6.4e-12 75.1 169 30.8
arahy.Tifrunner.gnm1.ann1.1HA888 Arachis hypogaea HOM05D004737 ORTHO05D005623 8.4e-12 74.7 165 29.7
CARHR162770 Cardamine hirsuta HOM05D004737 ORTHO05D005623 8.4e-12 74.7 175 31.4
Atru.chr2.779 Acer truncatum HOM05D004737 ORTHO05D005623 1.1e-11 74.3 162 33.3
Carub.0005s1938 Capsella rubella HOM05D004737 ORTHO05D005623 1.1e-11 74.3 172 32.0
THA.LOC104805035 Tarenaya hassleriana HOM05D004737 ORTHO05D005623 1.4e-11 73.9 175 31.4
unitig_88.g27612 Utricularia gibba HOM05D004737 ORTHO05D005623 1.9e-11 73.6 187 31.6
Lalb_Chr09g0321031 Lupinus albus HOM05D004737 ORTHO05D005623 2.4e-11 73.2 159 34.0
C06p20780 Brassica napus HOM05D004737 ORTHO05D005623 3.2e-11 72.8 178 31.5
BolC6t37261H Brassica oleracea HOM05D004737 ORTHO05D005623 3.2e-11 72.8 178 31.5
BcaC08g44605 Brassica carinata HOM05D004737 ORTHO05D005623 5.4e-11 72.0 175 32.0
PSO541G1514 Papaver somniferum HOM05D004737 ORTHO05D005623 5.4e-11 72.0 169 30.8
arahy.Tifrunner.gnm1.ann1.4Y2W44 Arachis hypogaea HOM05D004737 ORTHO05D005623 1.2e-10 70.9 122 32.8
Atru.chr1.3074 Acer truncatum HOM05D004737 ORTHO05D005623 1.6e-10 70.5 183 27.9
Os01g0764700 Oryza sativa ssp. japonica HOM05D004737 ORTHO05D005623 1.6e-10 70.5 104 35.6
HPP92_015901 Vanilla planifolia HOM05D004737 ORTHO05D005623 1.6e-10 70.5 188 28.7
Actinidia14554 Actinidia chinensis HOM05D004737 ORTHO05D005623 7.8e-10 68.2 127 37.0
Sabra01G0079500 Salix brachista HOM05D004737 ORTHO05D005623 1.0e-09 67.8 203 28.6
ECA246G4230 Erigeron canadensis HOM05D004737 ORTHO05D005623 1.3e-09 67.4 122 32.8
Migut.A00772 Erythranthe guttata HOM05D004737 ORTHO05D005623 2.3e-09 66.6 119 40.3
Atru.chr8.1290 Acer truncatum HOM05D004737 ORTHO05D005623 1.9e-08 63.5 178 27.5
Atru.chr8.895 Acer truncatum HOM05D004737 ORTHO05D005623 3.6e-07 59.3 126 30.2
Atru.chr6.95 Acer truncatum HOM05D004737 ORTHO05D005623 8.1e-07 58.2 109 32.1
AagrBONN_evm.TU.Sc2ySwM_362.2040 Anthoceros agrestis HOM05D004737 ORTHO05D005623 3.1e-06 56.2 110 29.1


User provided reference genes

Program Settings