Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr11.2687 Acer truncatum HOM05D004413 ORTHO05D005199 9.6e-242 839.7 417 100.0
Ciclev10031642m.g Citrus clementina HOM05D004413 ORTHO05D005199 1.5e-149 533.5 413 66.6
Atru.chr1.1383 Acer truncatum HOM05D004413 ORTHO05D005199 9.2e-144 514.2 288 88.2
Haze_03259 Corylus avellana HOM05D004413 ORTHO05D005199 3.6e-140 502.3 412 64.3
Cfa010719 Carpinus fangiana HOM05D004413 ORTHO05D005199 1.7e-137 493.4 411 63.7
Thecc.01G415800 Theobroma cacao HOM05D004413 ORTHO05D005199 3.5e-135 485.7 422 61.6
QL04p000397 Quercus lobata HOM05D004413 ORTHO05D005199 4.6e-135 485.3 481 54.9
TWI09G1219 Tripterygium wilfordii HOM05D004413 ORTHO05D005199 4.6e-135 485.3 427 59.3
Manes.10G150400 Manihot esculenta HOM05D004413 ORTHO05D005199 6.6e-134 481.5 423 59.1
QL04p002426 Quercus lobata HOM05D004413 ORTHO05D005199 8.6e-134 481.1 459 56.6
Duzib138G1189 Durio zibethinus HOM05D004413 ORTHO05D005199 9.5e-133 477.6 406 62.8
Gohir.D08G167400 Gossypium hirsutum HOM05D004413 ORTHO05D005199 2.1e-132 476.5 409 61.9
Gohir.A08G146400 Gossypium hirsutum HOM05D004413 ORTHO05D005199 6.2e-132 474.9 409 61.4
Gorai.004G174800 Gossypium raimondii HOM05D004413 ORTHO05D005199 1.1e-131 474.2 409 61.6
Gohir.A08G005500 Gossypium hirsutum HOM05D004413 ORTHO05D005199 7.6e-130 468.0 409 60.9
Gohir.A01G019401 Gossypium hirsutum HOM05D004413 ORTHO05D005199 9.9e-130 467.6 403 60.3
MD07G1003300 Malus domestica HOM05D004413 ORTHO05D005199 4.1e-128 462.2 405 61.2
Potri.001G228000 Populus trichocarpa HOM05D004413 ORTHO05D005199 5.4e-128 461.8 418 59.8
TAR636G2532 Trochodendron aralioides HOM05D004413 ORTHO05D005199 5.4e-128 461.8 435 57.5
GSVIVG01001402001 Vitis vinifera HOM05D004413 ORTHO05D005199 7.1e-128 461.5 418 57.4
COL.COLO4_30064 Corchorus olitorius HOM05D004413 ORTHO05D005199 2.7e-127 459.5 422 59.7
arahy.Tifrunner.gnm1.ann1.X2RX6E Arachis hypogaea HOM05D004413 ORTHO05D005199 4.6e-127 458.8 419 57.8
RcHm_v2.0_Chr7g0230361 Rosa chinensis HOM05D004413 ORTHO05D005199 3.9e-126 455.7 422 60.0
arahy.Tifrunner.gnm1.ann1.8FHU3N Arachis hypogaea HOM05D004413 ORTHO05D005199 8.6e-126 454.5 419 57.3
Sabra16G0135900 Salix brachista HOM05D004413 ORTHO05D005199 1.2e-124 450.7 424 58.7
CiPaw.16G012500 Carya illinoinensis HOM05D004413 ORTHO05D005199 1.2e-122 444.1 390 60.5
Glyma.16G203400 Glycine max HOM05D004413 ORTHO05D005199 1.2e-122 444.1 420 56.2
MD02G1318000 Malus domestica HOM05D004413 ORTHO05D005199 1.5e-122 443.7 405 59.3
Lalb_Chr19g0124241 Lupinus albus HOM05D004413 ORTHO05D005199 4.4e-122 442.2 406 57.6
Glyma.09G152600 Glycine max HOM05D004413 ORTHO05D005199 7.6e-122 441.4 420 56.0
THA.LOC104826126 Tarenaya hassleriana HOM05D004413 ORTHO05D005199 7.6e-122 441.4 414 55.8
CSS0018065 Camellia sinensis var. sinensis HOM05D004413 ORTHO05D005199 1.3e-121 440.7 411 57.4
FvH4_5g32720 Fragaria vesca HOM05D004413 ORTHO05D005199 5.4e-120 435.3 423 56.7
ClCG09G003830 Citrullus lanatus HOM05D004413 ORTHO05D005199 7.1e-120 434.9 416 55.3
FAN13G1137 Fragaria x ananassa HOM05D004413 ORTHO05D005199 9.3e-120 434.5 423 57.0
CANSAT01G0573 Cannabis sativa HOM05D004413 ORTHO05D005199 1.2e-119 434.1 424 55.4
Cpa.g.sc189.31 Carica papaya HOM05D004413 ORTHO05D005199 1.6e-119 433.7 396 55.8
FAN18G0644 Fragaria x ananassa HOM05D004413 ORTHO05D005199 2.1e-119 433.3 423 56.5
Lj2g0027526 Lotus japonicus HOM05D004413 ORTHO05D005199 2.7e-119 433.0 409 56.7
CANSAT01G1789 Cannabis sativa HOM05D004413 ORTHO05D005199 6.0e-119 431.8 424 55.4
FAN08G0618 Fragaria x ananassa HOM05D004413 ORTHO05D005199 5.1e-118 428.7 432 55.6
Phvul.004G126300 Phaseolus vulgaris HOM05D004413 ORTHO05D005199 5.1e-118 428.7 420 54.3
Aa31LG1G19950 Aethionema arabicum HOM05D004413 ORTHO05D005199 1.1e-115 421.0 411 55.2
Medtr6g463300 Medicago truncatula HOM05D004413 ORTHO05D005199 1.1e-115 421.0 407 55.8
Ca_02163_v3 Cicer arietinum L. HOM05D004413 ORTHO05D005199 5.3e-115 418.7 404 55.0
Carub.0001s0418 Capsella rubella HOM05D004413 ORTHO05D005199 1.2e-114 417.5 411 53.3
CsaV3_7G031400 Cucumis sativus L. HOM05D004413 ORTHO05D005199 3.4e-114 416.0 414 53.6
MSTRG.28094 Avicennia marina HOM05D004413 ORTHO05D005199 4.9e-113 412.1 422 52.6
vmacro21162 Vaccinium macrocarpon HOM05D004413 ORTHO05D005199 4.2e-112 409.1 452 51.1
Nn3g19386 Nelumbo nucifera HOM05D004413 ORTHO05D005199 1.2e-111 407.5 441 50.3
TPR.G25309 Trifolium pratense HOM05D004413 ORTHO05D005199 2.1e-111 406.8 408 54.4
VMungo0464G1648 Vigna mungo HOM05D004413 ORTHO05D005199 2.1e-111 406.8 431 51.7
Oeu013591.1 Olea europaea HOM05D004413 ORTHO05D005199 2.7e-111 406.4 414 53.6
PGR031G3941 Punica granatum HOM05D004413 ORTHO05D005199 3.5e-111 406.0 415 53.5
CANSAT64G0940 Cannabis sativa HOM05D004413 ORTHO05D005199 6.0e-111 405.2 439 51.3
Migut.N01644 Erythranthe guttata HOM05D004413 ORTHO05D005199 8.7e-110 401.4 403 53.3
TPR.G37653 Trifolium pratense HOM05D004413 ORTHO05D005199 9.6e-109 397.9 413 52.1
AT1G04945 Arabidopsis thaliana HOM05D004413 ORTHO05D005199 1.3e-108 397.5 411 52.3
Sed0007945 Sechium edule HOM05D004413 ORTHO05D005199 3.7e-108 396.0 415 51.3
BcaC07g36870 Brassica carinata HOM05D004413 ORTHO05D005199 4.0e-107 392.5 413 51.8
Thhalv10007024m.g Eutrema salsugineum HOM05D004413 ORTHO05D005199 4.0e-107 392.5 432 50.9
Sc17g0005470 Simmondsia chinensis HOM05D004413 ORTHO05D005199 1.5e-106 390.6 418 52.6
Aqoxy2G00074 Aquilegia oxysepala HOM05D004413 ORTHO05D005199 3.4e-106 389.4 400 53.2
C08p01610 Brassica napus HOM05D004413 ORTHO05D005199 2.2e-105 386.7 413 52.3
BolC8t46964H Brassica oleracea HOM05D004413 ORTHO05D005199 2.2e-105 386.7 413 52.3
CARHR004350 Cardamine hirsuta HOM05D004413 ORTHO05D005199 2.2e-105 386.7 411 50.4
Rhsim01G0132100 Rhododendron simsii HOM05D004413 ORTHO05D005199 2.2e-105 386.7 498 47.0
AL1G14670 Arabidopsis lyrata HOM05D004413 ORTHO05D005199 4.9e-105 385.6 412 51.9
A08p36630 Brassica napus HOM05D004413 ORTHO05D005199 8.4e-105 384.8 425 50.6
BraA08t35565Z Brassica rapa HOM05D004413 ORTHO05D005199 8.4e-105 384.8 425 50.6
GSVIVG01037065001 Vitis vinifera HOM05D004413 ORTHO05D005199 8.4e-105 384.8 291 63.2
Sp1g03790 Schrenkiella parvula HOM05D004413 ORTHO05D005199 1.4e-104 384.0 420 51.0
Cc02_g27150 Coffea canephora HOM05D004413 ORTHO05D005199 5.5e-104 382.1 427 50.1
AUR62035034 Chenopodium quinoa HOM05D004413 ORTHO05D005199 1.6e-103 380.6 413 50.8
Dinv43918 Davidia involucrata HOM05D004413 ORTHO05D005199 1.6e-103 380.6 396 51.5
Sed0010518 Sechium edule HOM05D004413 ORTHO05D005199 6.0e-103 378.6 414 50.7
CAN.G1393.6 Capsicum annuum HOM05D004413 ORTHO05D005199 3.0e-102 376.3 416 49.8
AUR62016087 Chenopodium quinoa HOM05D004413 ORTHO05D005199 6.7e-102 375.2 413 50.4
Prupe.2G005000 Prunus persica HOM05D004413 ORTHO05D005199 6.7e-102 375.2 408 53.9
EL10Ac3g05776 Beta vulgaris HOM05D004413 ORTHO05D005199 1.9e-101 373.6 424 50.0
BcaB03g13464 Brassica carinata HOM05D004413 ORTHO05D005199 2.5e-101 373.2 411 50.6
Psat1g110760 Pisum sativum HOM05D004413 ORTHO05D005199 9.6e-101 371.3 422 51.7
Hund04656 Selenicereus undatus HOM05D004413 ORTHO05D005199 1.3e-100 370.9 412 50.5
Lsat_1_v5_gn_4_46341 Lactuca sativa HOM05D004413 ORTHO05D005199 2.4e-99 366.7 423 48.2
Lalb_Chr19g0124231 Lupinus albus HOM05D004413 ORTHO05D005199 5.3e-99 365.5 311 57.6
Hma1.2p1_0038F.1_g024150 Hydrangea macrophylla HOM05D004413 ORTHO05D005199 7.6e-98 361.7 418 47.8
Psat6g015760 Pisum sativum HOM05D004413 ORTHO05D005199 1.0e-97 361.3 323 57.6
MELO3C023518.2 Cucumis melo HOM05D004413 ORTHO05D005199 1.3e-97 360.9 413 49.2
Lj9A624G21 Lonicera japonica HOM05D004413 ORTHO05D005199 3.2e-96 356.3 436 49.8
PSO210G0136 Papaver somniferum HOM05D004413 ORTHO05D005199 5.5e-96 355.5 414 49.3
SGA_v2.0_scaffold95G28780 Striga asiatica HOM05D004413 ORTHO05D005199 5.5e-96 355.5 319 55.5
Nitab4.5_0001006g0010 Nicotiana tabacum HOM05D004413 ORTHO05D005199 1.2e-95 354.4 358 53.4
Nitab4.5_0000346g0070 Nicotiana tabacum HOM05D004413 ORTHO05D005199 1.6e-95 354.0 400 51.0
Solyc01g074020.3 Solanum lycopersicum HOM05D004413 ORTHO05D005199 3.0e-94 349.7 320 56.6
arahy.Tifrunner.gnm1.ann1.MVM3BY Arachis hypogaea HOM05D004413 ORTHO05D005199 8.7e-94 348.2 424 48.1
arahy.Tifrunner.gnm1.ann1.0XNQ2B Arachis hypogaea HOM05D004413 ORTHO05D005199 1.1e-93 347.8 415 48.2
Peaxi162Scf01343g00011 Petunia axillaris HOM05D004413 ORTHO05D005199 1.5e-93 347.4 456 45.0
PSO210G4410 Papaver somniferum HOM05D004413 ORTHO05D005199 4.3e-93 345.9 416 48.3
CDE04G1207 Ceratophyllum demersum HOM05D004413 ORTHO05D005199 3.7e-92 342.8 442 45.9
CDE12G0144 Ceratophyllum demersum HOM05D004413 ORTHO05D005199 3.1e-91 339.7 442 44.6
SHI15877 Sapria himalayana HOM05D004413 ORTHO05D005199 2.0e-90 337.0 410 46.3
PSO170G4481 Papaver somniferum HOM05D004413 ORTHO05D005199 5.0e-89 332.4 421 46.8
HPP92_005742 Vanilla planifolia HOM05D004413 ORTHO05D005199 5.5e-88 328.9 401 47.4
HanXRQChr16g0520481 Helianthus annuus HOM05D004413 ORTHO05D005199 1.6e-87 327.4 518 40.3
BcaC08g43081 Brassica carinata HOM05D004413 ORTHO05D005199 1.9e-85 320.5 286 57.3
Ah.07g208370 Amaranthus hybridus HOM05D004413 ORTHO05D005199 5.7e-85 318.9 398 45.5
C06p03410 Brassica napus HOM05D004413 ORTHO05D005199 2.2e-84 317.0 286 57.0
BolC6t35480H Brassica oleracea HOM05D004413 ORTHO05D005199 2.2e-84 317.0 286 57.0
A06p04180 Brassica napus HOM05D004413 ORTHO05D005199 9.1e-83 311.6 287 56.8
BraA06t23623Z Brassica rapa HOM05D004413 ORTHO05D005199 1.2e-82 311.2 287 56.8
Gohir.A11G220500 Gossypium hirsutum HOM05D004413 ORTHO05D005199 6.3e-76 288.9 292 56.5
Actinidia21569 Actinidia chinensis HOM05D004413 ORTHO05D005199 1.4e-75 287.7 291 55.7
ATR0582G367 Amborella trichopoda HOM05D004413 ORTHO05D005199 4.1e-75 286.2 452 41.4
Os01g0962500 Oryza sativa ssp. japonica HOM05D004413 ORTHO05D005199 1.7e-68 264.2 335 47.2
ECA234G1090 Erigeron canadensis HOM05D004413 ORTHO05D005199 2.8e-68 263.5 343 45.5
PGSC0003DMG400006318 Solanum tuberosum HOM05D004413 ORTHO05D005199 2.0e-66 257.3 228 56.6
Zm00001eb140340 Zea mays HOM05D004413 ORTHO05D005199 1.9e-64 250.8 341 46.6
Lj9A625T17 Lonicera japonica HOM05D004413 ORTHO05D005199 4.7e-63 246.1 354 45.8
SEGI_33976 Sequoiadendron giganteum HOM05D004413 ORTHO05D005199 8.2e-60 235.3 299 43.1
unitig_578.g16701 Utricularia gibba HOM05D004413 ORTHO05D005199 1.1e-59 235.0 249 47.8
Dinv43485 Davidia involucrata HOM05D004413 ORTHO05D005199 5.2e-54 216.1 171 59.6
PSO170G2986 Papaver somniferum HOM05D004413 ORTHO05D005199 4.4e-53 213.0 257 48.6
SGA_v2.0_scaffold4G02237 Striga asiatica HOM05D004413 ORTHO05D005199 9.8e-53 211.8 192 55.2
SMO351G0528 Selaginella moellendorffii HOM05D004413 ORTHO05D005199 1.4e-51 208.0 298 40.9
Pp3c11_18200 Physcomitrium patens HOM05D004413 ORTHO05D005199 2.0e-50 204.1 285 41.8
Mapoly0103s0075 Marchantia polymorpha HOM05D004413 ORTHO05D005199 5.0e-49 199.5 297 38.4
Sopen01g033590 Solanum pennellii HOM05D004413 ORTHO05D005199 1.1e-43 181.8 174 54.6
AagrBONN_evm.TU.Sc2ySwM_228.625 Anthoceros agrestis HOM05D004413 ORTHO05D005199 5.4e-43 179.5 283 39.9
Cre01.g049400 Chlamydomonas reinhardtii HOM05D004413 ORTHO05D005199 3.5e-42 176.8 271 37.6
Sopen01g033580 Solanum pennellii HOM05D004413 ORTHO05D005199 5.0e-41 172.9 164 54.3
DCAR_015691 Daucus carota HOM05D004413 ORTHO05D005199 4.7e-39 166.4 130 60.8
Atru.chr1.1384 Acer truncatum HOM05D004413 ORTHO05D005199 1.2e-37 161.8 94 85.1
GSVIVG01027705001 Vitis vinifera HOM05D004413 ORTHO05D005199 3.4e-37 160.2 131 58.8
CBR_g50781 Chara braunii HOM05D004413 ORTHO05D005199 2.9e-36 157.1 258 34.9
QL04p000430 Quercus lobata HOM05D004413 ORTHO05D005199 3.5e-34 150.2 216 43.1
Aa31LG1G19980 Aethionema arabicum HOM05D004413 ORTHO05D005199 4.3e-32 143.3 192 45.3
Actinidia21570 Actinidia chinensis HOM05D004413 ORTHO05D005199 1.2e-31 141.7 109 58.7
SEGI_10444 Sequoiadendron giganteum HOM05D004413 ORTHO05D005199 4.7e-31 139.8 216 37.0
SEGI_03996 Sequoiadendron giganteum HOM05D004413 ORTHO05D005199 1.8e-30 137.9 217 36.9
DCAR_015690 Daucus carota HOM05D004413 ORTHO05D005199 2.6e-29 134.0 222 40.1
GSVIVG01027710001 Vitis vinifera HOM05D004413 ORTHO05D005199 3.5e-26 123.6 106 56.6
BraA09t42095Z Brassica rapa HOM05D004413 ORTHO05D005199 7.8e-26 122.5 98 57.1
Actinidia15863 Actinidia chinensis HOM05D004413 ORTHO05D005199 1.5e-24 118.2 95 56.8
A08p37250 Brassica napus HOM05D004413 ORTHO05D005199 1.1e-22 112.1 69 72.5
TAR633G2579 Trochodendron aralioides HOM05D004413 ORTHO05D005199 4.0e-22 110.2 119 48.7
GSVIVG01018194001 Vitis vinifera HOM05D004413 ORTHO05D005199 4.9e-20 103.2 79 60.8
Manes.10G149900 Manihot esculenta HOM05D000073 ORTHO05D000033 1.1e-19 102.1 70 70.0
MCO07G333 Micromonas commoda HOM05D004413 ORTHO05D005199 4.1e-19 100.1 266 28.6
GSVIVG01027698001 Vitis vinifera HOM05D004413 ORTHO05D005199 5.4e-19 99.8 63 68.3
PRCOL_00005718 Prasinoderma coloniale HOM05D004413 ORTHO05D005199 1.3e-17 95.1 175 34.9
HanXRQChr11g0328201 Helianthus annuus HOM05D004413 ORTHO05D005199 6.6e-17 92.8 62 67.7
TWI73G0758 Tripterygium wilfordii HOM05D004413 ORTHO05D005199 5.6e-16 89.7 96 50.0
Actinidia15864 Actinidia chinensis HOM05D004413 ORTHO05D005199 6.2e-15 86.3 55 70.9
Nitab4.5_0003792g0060 Nicotiana tabacum HOM05D004413 ORTHO05D005199 3.8e-12 77.0 84 46.4
GSVIVG01026105001 Vitis vinifera HOM05D004413 ORTHO05D005199 4.9e-12 76.6 53 69.8
GSVIVG01012403001 Vitis vinifera HOM05D004413 ORTHO05D005199 1.1e-11 75.5 53 67.9
GSVIVG01027696001 Vitis vinifera HOM05D004413 ORTHO05D005199 1.6e-10 71.6 48 62.5
GSVIVG01027714001 Vitis vinifera HOM05D004413 ORTHO05D005199 1.6e-10 71.6 168 37.5
Sc24g0000530 Simmondsia chinensis HOM05D004413 ORTHO05D005199 3.0e-09 67.4 149 36.9
Hma1.2p1_0276F.1_g111190 Hydrangea macrophylla HOM05D005449 ORTHO05D006916 3.9e-09 67.0 68 48.5
Lju170C28T1 Lonicera japonica HOM05D004413 ORTHO05D005199 6.2e-07 59.7 79 49.4
GSVIVG01037069001 Vitis vinifera HOM05D004413 ORTHO05D005199 6.2e-07 59.7 56 55.4


User provided reference genes

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