Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr1.89 Acer truncatum HOM05D004082 ORTHO05D004729 5.8e-88 327.4 152 100.0
Atru.chr2.402 Acer truncatum HOM05D004082 ORTHO05D004729 1.9e-78 295.8 143 95.1
Prupe.6G325300 Prunus persica HOM05D004082 ORTHO05D004729 7.6e-72 273.9 143 86.7
MD12G1218800 Malus domestica HOM05D004082 ORTHO05D004729 3.8e-71 271.6 143 84.6
Dinv40289 Davidia involucrata HOM05D004082 ORTHO05D004729 6.5e-71 270.8 143 85.3
TPR.G33180 Trifolium pratense HOM05D004082 ORTHO05D004729 8.4e-71 270.4 143 83.9
RhsimUnG0226200 Rhododendron simsii HOM05D004082 ORTHO05D004729 1.1e-70 270.0 148 80.4
Ciclev10000150m.g Citrus clementina HOM05D004082 ORTHO05D004729 3.2e-70 268.5 143 85.3
Medtr7g113570 Medicago truncatula HOM05D004082 ORTHO05D004729 3.2e-70 268.5 143 83.2
Sabra13G0023600 Salix brachista HOM05D004082 ORTHO05D004729 3.2e-70 268.5 143 85.3
Psat3g011080 Pisum sativum HOM05D004082 ORTHO05D004729 5.5e-70 267.7 144 82.6
Potri.013G021200 Populus trichocarpa HOM05D004082 ORTHO05D004729 5.5e-70 267.7 143 85.3
QL03p007071 Quercus lobata HOM05D004082 ORTHO05D004729 7.1e-70 267.3 143 84.6
CiPaw.07G018100 Carya illinoinensis HOM05D004082 ORTHO05D004729 9.3e-70 266.9 143 86.0
Lj5g0001168 Lotus japonicus HOM05D004082 ORTHO05D004729 3.5e-69 265.0 143 82.5
PGR031G3794 Punica granatum HOM05D004082 ORTHO05D004729 3.5e-69 265.0 143 83.9
CSS0005144 Camellia sinensis var. sinensis HOM05D004082 ORTHO05D004729 6.0e-69 264.2 143 83.9
Ca_10110_v3 Cicer arietinum L. HOM05D004082 ORTHO05D004729 7.9e-69 263.8 143 82.5
TWI56G0720 Tripterygium wilfordii HOM05D004082 ORTHO05D004729 7.9e-69 263.8 143 83.9
Glyma.03G238100 Glycine max HOM05D004082 ORTHO05D004729 1.0e-68 263.5 143 82.5
Nn1g02247 Nelumbo nucifera HOM05D004082 ORTHO05D004729 1.8e-68 262.7 143 81.1
Glyma.19G235500 Glycine max HOM05D004082 ORTHO05D004729 2.3e-68 262.3 143 82.5
Lj5C472G3 Lonicera japonica HOM05D004082 ORTHO05D004729 2.3e-68 262.3 143 83.2
Lj5C530G2 Lonicera japonica HOM05D004082 ORTHO05D004729 2.3e-68 262.3 143 83.2
DCAR_003333 Daucus carota HOM05D004082 ORTHO05D004729 3.0e-68 261.9 143 79.0
Eucgr.H04490 Eucalyptus grandis HOM05D004082 ORTHO05D004729 3.0e-68 261.9 143 81.8
Gorai.013G124200 Gossypium raimondii HOM05D004082 ORTHO05D004729 3.0e-68 261.9 144 83.3
Haze_04194 Corylus avellana HOM05D004082 ORTHO05D004729 3.9e-68 261.5 143 83.2
Duzib177G1172 Durio zibethinus HOM05D004082 ORTHO05D004729 3.9e-68 261.5 143 82.5
Manes.08G120500 Manihot esculenta HOM05D004082 ORTHO05D004729 3.9e-68 261.5 143 84.6
Sed0016495 Sechium edule HOM05D004082 ORTHO05D004729 3.9e-68 261.5 143 81.1
Gohir.D13G110800 Gossypium hirsutum HOM05D004082 ORTHO05D004729 5.1e-68 261.2 143 83.2
Gorai.007G297200 Gossypium raimondii HOM05D004082 ORTHO05D004729 5.1e-68 261.2 143 83.2
GSVIVG01000073001 Vitis vinifera HOM05D004082 ORTHO05D004729 5.1e-68 261.2 143 80.4
arahy.Tifrunner.gnm1.ann1.0R76NZ Arachis hypogaea HOM05D004082 ORTHO05D004729 6.7e-68 260.8 143 81.1
CANSAT54G2367 Cannabis sativa HOM05D004082 ORTHO05D004729 6.7e-68 260.8 144 84.0
TPR.G6044 Trifolium pratense HOM05D004082 ORTHO05D004729 6.7e-68 260.8 143 81.8
arahy.Tifrunner.gnm1.ann1.HF1TD9 Arachis hypogaea HOM05D004082 ORTHO05D004729 8.7e-68 260.4 143 81.1
Duzib106G1815 Durio zibethinus HOM05D004082 ORTHO05D004729 8.7e-68 260.4 143 82.5
Lj1g0013013 Lotus japonicus HOM05D004082 ORTHO05D004729 8.7e-68 260.4 143 81.8
Peaxi162Scf00037g00423 Petunia axillaris HOM05D004082 ORTHO05D004729 8.7e-68 260.4 143 81.1
ClCG03G016970 Citrullus lanatus HOM05D004082 ORTHO05D004729 1.1e-67 260.0 143 80.4
VMungo0720G1572 Vigna mungo HOM05D004082 ORTHO05D004729 1.1e-67 260.0 143 80.4
Phvul.007G180100 Phaseolus vulgaris HOM05D004082 ORTHO05D004729 1.5e-67 259.6 143 81.8
MELO3C015324.2 Cucumis melo HOM05D004082 ORTHO05D004729 2.5e-67 258.8 143 81.1
Oeu038297.1 Olea europaea HOM05D004082 ORTHO05D004729 2.5e-67 258.8 143 80.4
Cpa.g.sc48.57 Carica papaya HOM05D004082 ORTHO05D004729 3.3e-67 258.5 143 81.8
COL.COLO4_13463 Corchorus olitorius HOM05D004082 ORTHO05D004729 3.3e-67 258.5 143 80.4
Phvul.006G092100 Phaseolus vulgaris HOM05D004082 ORTHO05D004729 3.3e-67 258.5 143 80.4
HanXRQChr02g0046191 Helianthus annuus HOM05D004082 ORTHO05D004729 4.3e-67 258.1 143 79.7
Psat6g151160 Pisum sativum HOM05D004082 ORTHO05D004729 4.3e-67 258.1 143 79.7
Solyc01g099090.3 Solanum lycopersicum HOM05D004082 ORTHO05D004729 4.3e-67 258.1 143 79.0
Sopen01g042650 Solanum pennellii HOM05D004082 ORTHO05D004729 4.3e-67 258.1 143 79.0
Medtr1g082890 Medicago truncatula HOM05D004082 ORTHO05D004729 7.4e-67 257.3 143 79.7
Hund21813 Selenicereus undatus HOM05D004082 ORTHO05D004729 7.4e-67 257.3 146 78.1
PGSC0003DMG401024737 Solanum tuberosum HOM05D004082 ORTHO05D004729 7.4e-67 257.3 143 78.3
arahy.Tifrunner.gnm1.ann1.7P2G6T Arachis hypogaea HOM05D004082 ORTHO05D004729 9.6e-67 256.9 143 81.8
MSTRG.27997 Avicennia marina HOM05D004082 ORTHO05D004729 9.6e-67 256.9 143 79.7
Nitab4.5_0000137g0200 Nicotiana tabacum HOM05D004082 ORTHO05D004729 9.6e-67 256.9 143 79.7
VMungo0540G1737 Vigna mungo HOM05D004082 ORTHO05D004729 9.6e-67 256.9 143 79.7
TAR636G3250 Trochodendron aralioides HOM05D004082 ORTHO05D004729 1.3e-66 256.5 143 80.4
CAN.G1034.45 Capsicum annuum HOM05D004082 ORTHO05D004729 1.6e-66 256.1 143 79.0
DCAR_022172 Daucus carota HOM05D004082 ORTHO05D004729 1.6e-66 256.1 143 77.6
SalBow3G1583 Salvia bowleyana HOM05D004082 ORTHO05D004729 2.8e-66 255.4 143 78.3
Aqoxy5G00500 Aquilegia oxysepala HOM05D004082 ORTHO05D004729 3.7e-66 255.0 143 76.9
Lsat_1_v5_gn_9_86081 Lactuca sativa HOM05D004082 ORTHO05D004729 3.7e-66 255.0 143 79.0
MBI17_g12862_MAGBIO Magnolia biondii HOM05D004082 ORTHO05D004729 3.7e-66 255.0 143 79.7
Nitab4.5_0003227g0030 Nicotiana tabacum HOM05D004082 ORTHO05D004729 4.8e-66 254.6 143 79.0
Glyma.10G154400 Glycine max HOM05D004082 ORTHO05D004729 6.3e-66 254.2 143 79.0
Thecc.05G302900 Theobroma cacao HOM05D004082 ORTHO05D004729 6.3e-66 254.2 143 81.1
ATR0626G266 Amborella trichopoda HOM05D004082 ORTHO05D004729 1.1e-65 253.4 143 79.0
PSO832G1048 Papaver somniferum HOM05D004082 ORTHO05D004729 1.4e-65 253.1 143 78.3
Zm00001eb287240 Zea mays HOM05D004082 ORTHO05D004729 1.8e-65 252.7 143 76.9
CsaV3_1G038970 Cucumis sativus L. HOM05D004082 ORTHO05D004729 3.1e-65 251.9 144 79.9
Lalb_Chr18g0045631 Lupinus albus HOM05D004082 ORTHO05D004729 3.1e-65 251.9 143 77.6
Hund07072 Selenicereus undatus HOM05D004082 ORTHO05D004729 3.1e-65 251.9 143 78.3
Sc16g0008480 Simmondsia chinensis HOM05D004082 ORTHO05D004729 3.1e-65 251.9 143 78.3
SGA_v2.0_scaffold81G26069 Striga asiatica HOM05D004082 ORTHO05D004729 3.1e-65 251.9 143 76.9
Aqoxy2G03354 Aquilegia oxysepala HOM05D004082 ORTHO05D004729 4.1e-65 251.5 143 78.3
THA.LOC104805875 Tarenaya hassleriana HOM05D004082 ORTHO05D004729 4.1e-65 251.5 143 78.3
Migut.N02007 Erythranthe guttata HOM05D004082 ORTHO05D004729 1.2e-64 250.0 143 76.9
Glyma.20G233900 Glycine max HOM05D004082 ORTHO05D004729 1.2e-64 250.0 143 77.6
A08p34860 Brassica napus HOM05D004082 ORTHO05D004729 2.0e-64 249.2 143 77.6
BcaC07g38468 Brassica carinata HOM05D004082 ORTHO05D004729 4.5e-64 248.1 143 77.6
BolC8t48880H Brassica oleracea HOM05D004082 ORTHO05D004729 4.5e-64 248.1 143 77.6
BraA08t35397Z Brassica rapa HOM05D004082 ORTHO05D004729 4.5e-64 248.1 143 76.9
TWI56G1006 Tripterygium wilfordii HOM05D004082 ORTHO05D004729 5.9e-64 247.7 143 78.3
Cc02_g33390 Coffea canephora HOM05D004082 ORTHO05D004729 7.6e-64 247.3 143 79.7
FAN09G0543 Fragaria x ananassa HOM05D004082 ORTHO05D004729 7.6e-64 247.3 146 77.4
ECA236G4884 Erigeron canadensis HOM05D004082 ORTHO05D004729 3.8e-63 245.0 143 75.5
FAN05G3196 Fragaria x ananassa HOM05D004082 ORTHO05D004729 3.8e-63 245.0 143 76.9
Lalb_Chr02g0148261 Lupinus albus HOM05D004082 ORTHO05D004729 5.0e-63 244.6 143 77.6
SEGI_00836 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 6.5e-63 244.2 149 74.5
CARHR008900 Cardamine hirsuta HOM05D004082 ORTHO05D004729 8.5e-63 243.8 143 76.9
Thhalv10006730m.g Eutrema salsugineum HOM05D004082 ORTHO05D004729 8.5e-63 243.8 143 77.6
Sp1g07620 Schrenkiella parvula HOM05D004082 ORTHO05D004729 1.4e-62 243.0 143 76.9
C08p12400 Brassica napus HOM05D004082 ORTHO05D004729 1.9e-62 242.7 143 76.2
BcaB07g34118 Brassica carinata HOM05D004082 ORTHO05D004729 2.5e-62 242.3 143 75.5
RcHm_v2.0_Chr3g0454891 Rosa chinensis HOM05D004082 ORTHO05D004729 2.5e-62 242.3 143 75.5
Aa31sc136G30 Aethionema arabicum HOM05D004082 ORTHO05D004729 3.2e-62 241.9 143 76.9
FvH4_6g05900 Fragaria vesca HOM05D004082 ORTHO05D004729 3.2e-62 241.9 143 76.2
Os05g0391500 Oryza sativa ssp. japonica HOM05D004082 ORTHO05D004729 3.2e-62 241.9 143 74.8
EL10Ac4g09354 Beta vulgaris HOM05D004082 ORTHO05D004729 4.2e-62 241.5 143 75.5
Ah.06g189390 Amaranthus hybridus HOM05D004082 ORTHO05D004729 5.5e-62 241.1 143 76.2
AL1G19440 Arabidopsis lyrata HOM05D004082 ORTHO05D004729 5.5e-62 241.1 142 77.5
A06p05830 Brassica napus HOM05D004082 ORTHO05D004729 5.5e-62 241.1 143 74.8
FAN14G3006 Fragaria x ananassa HOM05D004082 ORTHO05D004729 7.2e-62 240.7 143 75.5
Carub.0001s0833 Capsella rubella HOM05D004082 ORTHO05D004729 2.1e-61 239.2 143 75.5
SHI18140 Sapria himalayana HOM05D004082 ORTHO05D004729 2.1e-61 239.2 143 75.5
FAN05G5148 Fragaria x ananassa HOM05D004082 ORTHO05D004729 2.7e-61 238.8 143 76.2
arahy.Tifrunner.gnm1.ann1.MMBS5J Arachis hypogaea HOM05D004082 ORTHO05D004729 4.6e-61 238.0 153 73.2
AT1G09010 Arabidopsis thaliana HOM05D004082 ORTHO05D004729 6.1e-61 237.7 143 74.8
arahy.Tifrunner.gnm1.ann1.DUKX6J Arachis hypogaea HOM05D004082 ORTHO05D004729 6.1e-61 237.7 143 77.6
HPP92_001021 Vanilla planifolia HOM05D004082 ORTHO05D004729 6.1e-61 237.7 143 72.0
Prupe.6G325400 Prunus persica HOM05D004082 ORTHO05D004729 2.3e-60 235.7 143 74.1
AUR62005147 Chenopodium quinoa HOM05D004082 ORTHO05D004729 8.7e-60 233.8 143 73.4
BcaC05g24752 Brassica carinata HOM05D004082 ORTHO05D004729 1.5e-59 233.0 144 73.6
C05p07040 Brassica napus HOM05D004082 ORTHO05D004729 1.5e-59 233.0 144 73.6
BolC5t29459H Brassica oleracea HOM05D004082 ORTHO05D004729 1.5e-59 233.0 144 73.6
AUR62000827 Chenopodium quinoa HOM05D004082 ORTHO05D004729 4.3e-59 231.5 143 72.7
MD12G1218900 Malus domestica HOM05D004082 ORTHO05D004729 2.2e-58 229.2 143 72.0
Migut.B01033 Erythranthe guttata HOM05D004082 ORTHO05D004729 6.3e-58 227.6 143 70.6
Lj9A80G18 Lonicera japonica HOM05D004082 ORTHO05D004729 1.4e-54 216.5 124 77.4
unitig_52.g17387 Utricularia gibba HOM05D004082 ORTHO05D004729 1.1e-49 200.3 149 63.1
Mapoly0034s0073 Marchantia polymorpha HOM05D004082 ORTHO05D004729 6.9e-49 197.6 144 61.1
AagrBONN_evm.TU.Sc2ySwM_368.1060 Anthoceros agrestis HOM05D004082 ORTHO05D004729 2.0e-48 196.1 144 63.9
SMO367G0677 Selaginella moellendorffii HOM05D004082 ORTHO05D004729 5.5e-46 188.0 143 60.8
BcaC07g38465 Brassica carinata HOM05D004082 ORTHO05D004729 1.2e-45 186.8 144 63.9
Pp3c8_17060 Physcomitrium patens HOM05D004082 ORTHO05D004729 2.1e-45 186.0 143 60.8
Pp3c15_10050 Physcomitrium patens HOM05D004082 ORTHO05D004729 6.7e-44 181.0 146 57.5
Gohir.A11G265200 Gossypium hirsutum HOM05D004082 ORTHO05D004729 9.7e-43 177.2 96 81.2
vmacro22529 Vaccinium macrocarpon HOM05D004082 ORTHO05D004729 1.4e-41 173.3 96 78.1
arahy.Tifrunner.gnm1.ann1.3W7GTE Arachis hypogaea HOM05D004082 ORTHO05D004729 2.4e-41 172.6 96 79.2
vmacro05017 Vaccinium macrocarpon HOM05D004082 ORTHO05D004729 9.1e-41 170.6 96 77.1
CBR_g23107 Chara braunii HOM05D004082 ORTHO05D004729 1.9e-38 162.9 155 54.8
Gohir.D11G275400 Gossypium hirsutum HOM05D004082 ORTHO05D004729 7.2e-30 134.4 70 81.4
Gohir.A13G107600 Gossypium hirsutum HOM05D004082 ORTHO05D004729 1.7e-26 123.2 65 81.5
BraA06t23793Z Brassica rapa HOM05D004082 ORTHO05D004729 1.8e-25 119.8 65 78.5
CDE05G2291 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 7.0e-25 117.9 65 75.4
CAN.G2092.2 Capsicum annuum HOM05D004082 ORTHO05D004729 2.4e-17 92.8 119 45.4
Hund20275 Selenicereus undatus HOM05D004082 ORTHO05D004729 7.3e-14 81.3 46 73.9
CDE05G1624 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 2.1e-13 79.7 43 83.7
CAN.G623.34 Capsicum annuum HOM05D004082 ORTHO05D004729 4.9e-10 68.6 41 70.7
Solyc12g038840.2 Solanum lycopersicum HOM05D004082 ORTHO05D004729 8.3e-10 67.8 75 49.3


User provided reference genes

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