Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr1.4014 Acer truncatum HOM05D002880 ORTHO05D003450 0.0e+00 1218.0 603 100.0
Atru.chr1.3786 Acer truncatum HOM05D002880 ORTHO05D003450 1.9e-222 776.2 460 85.7
Dinv40086 Davidia involucrata HOM05D002880 ORTHO05D003450 2.3e-196 689.5 466 76.4
Thecc.01G019100 Theobroma cacao HOM05D002880 ORTHO05D003450 8.8e-196 687.6 465 75.9
COL.COLO4_21911 Corchorus olitorius HOM05D002880 ORTHO05D003450 5.7e-195 684.9 465 75.3
FAN26G2624 Fragaria x ananassa HOM05D002880 ORTHO05D003450 9.7e-195 684.1 463 76.2
FAN28G1007 Fragaria x ananassa HOM05D002880 ORTHO05D003450 9.7e-195 684.1 463 76.2
FAN23G1788 Fragaria x ananassa HOM05D002880 ORTHO05D003450 1.3e-194 683.7 463 76.2
RcHm_v2.0_Chr2g0099461 Rosa chinensis HOM05D002880 ORTHO05D003450 1.3e-194 683.7 463 76.5
FvH4_1g11860 Fragaria vesca HOM05D002880 ORTHO05D003450 1.7e-194 683.3 463 76.2
Prupe.7G168000 Prunus persica HOM05D002880 ORTHO05D003450 3.7e-194 682.2 463 75.4
FAN19G0100 Fragaria x ananassa HOM05D002880 ORTHO05D003450 8.2e-194 681.0 463 76.0
Gohir.A11G175500 Gossypium hirsutum HOM05D002880 ORTHO05D003450 1.1e-193 680.6 467 74.5
MD15G1245900 Malus domestica HOM05D002880 ORTHO05D003450 7.0e-193 677.9 463 74.9
Actinidia17445 Actinidia chinensis HOM05D002880 ORTHO05D003450 3.5e-192 675.6 466 74.7
Gorai.007G195100 Gossypium raimondii HOM05D002880 ORTHO05D003450 1.3e-191 673.7 467 74.1
SalBow3G1624 Salvia bowleyana HOM05D002880 ORTHO05D003450 1.3e-191 673.7 465 75.7
Eucgr.I02351 Eucalyptus grandis HOM05D002880 ORTHO05D003450 1.7e-191 673.3 464 74.8
TAR625G0893 Trochodendron aralioides HOM05D002880 ORTHO05D003450 1.7e-191 673.3 465 75.3
arahy.Tifrunner.gnm1.ann1.E76U4D Arachis hypogaea HOM05D002880 ORTHO05D003450 2.2e-191 672.9 467 74.7
arahy.Tifrunner.gnm1.ann1.FN5NT6 Arachis hypogaea HOM05D002880 ORTHO05D003450 2.2e-191 672.9 467 74.7
CSS0038464 Camellia sinensis var. sinensis HOM05D002880 ORTHO05D003450 2.2e-191 672.9 464 75.0
CSS0040827 Camellia sinensis var. sinensis HOM05D002880 ORTHO05D003450 2.2e-191 672.9 464 75.0
Manes.01G145600 Manihot esculenta HOM05D002880 ORTHO05D003450 2.9e-191 672.5 466 75.3
Gohir.D11G183100 Gossypium hirsutum HOM05D002880 ORTHO05D003450 5.0e-191 671.8 467 73.9
Nn5g30154 Nelumbo nucifera HOM05D002880 ORTHO05D003450 5.0e-191 671.8 465 74.6
Aqoxy5G01784 Aquilegia oxysepala HOM05D002880 ORTHO05D003450 2.5e-190 669.5 466 74.2
Potri.005G114300 Populus trichocarpa HOM05D002880 ORTHO05D003450 3.2e-190 669.1 466 73.8
QL06p032741 Quercus lobata HOM05D002880 ORTHO05D003450 3.2e-190 669.1 465 74.4
Duzib187G1438 Durio zibethinus HOM05D002880 ORTHO05D003450 7.2e-190 667.9 465 73.5
MD02G1132600 Malus domestica HOM05D002880 ORTHO05D003450 7.2e-190 667.9 463 73.4
Ciclev10024677m.g Citrus clementina HOM05D002880 ORTHO05D003450 9.4e-190 667.5 464 72.8
Duzib147G0886 Durio zibethinus HOM05D002880 ORTHO05D003450 9.4e-190 667.5 463 73.7
SGA_v2.0_scaffold78G25389 Striga asiatica HOM05D002880 ORTHO05D003450 1.2e-189 667.2 465 74.4
Glyma.01G166400 Glycine max HOM05D002880 ORTHO05D003450 2.1e-189 666.4 464 73.5
Glyma.11G077000 Glycine max HOM05D002880 ORTHO05D003450 3.6e-189 665.6 464 73.5
TWI09G0522 Tripterygium wilfordii HOM05D002880 ORTHO05D003450 3.6e-189 665.6 464 73.3
Cfa006971 Carpinus fangiana HOM05D002880 ORTHO05D003450 6.1e-189 664.8 466 74.7
ClCG01G020300 Citrullus lanatus HOM05D002880 ORTHO05D003450 6.1e-189 664.8 464 74.4
CsaV3_6G047090 Cucumis sativus L. HOM05D002880 ORTHO05D003450 6.1e-189 664.8 464 74.1
Lj2g0011330 Lotus japonicus HOM05D002880 ORTHO05D003450 1.0e-188 664.1 467 74.1
Peaxi162Scf00083g00425 Petunia axillaris HOM05D002880 ORTHO05D003450 1.4e-188 663.7 464 75.2
CiPaw.07G058400 Carya illinoinensis HOM05D002880 ORTHO05D003450 9.7e-187 657.5 464 73.7
Gohir.A02G170600 Gossypium hirsutum HOM05D002880 ORTHO05D003450 3.7e-186 655.6 460 73.7
Lalb_Chr16g0377511 Lupinus albus HOM05D002880 ORTHO05D003450 4.8e-186 655.2 467 73.4
Gohir.D03G009500 Gossypium hirsutum HOM05D002880 ORTHO05D003450 8.2e-186 654.4 460 73.5
Oeu005318.1 Olea europaea HOM05D002880 ORTHO05D003450 8.2e-186 654.4 464 74.6
Phvul.002G108900 Phaseolus vulgaris HOM05D002880 ORTHO05D003450 8.2e-186 654.4 471 73.2
MSTRG.2713 Avicennia marina HOM05D002880 ORTHO05D003450 1.1e-185 654.1 466 73.6
Migut.H01155 Erythranthe guttata HOM05D002880 ORTHO05D003450 1.1e-185 654.1 463 73.9
Lalb_Chr09g0321741 Lupinus albus HOM05D002880 ORTHO05D003450 1.1e-185 654.1 468 73.3
Ca_25825_v3 Cicer arietinum L. HOM05D002880 ORTHO05D003450 1.4e-185 653.7 467 73.2
MBI14_g08214_MAGBIO Magnolia biondii HOM05D002880 ORTHO05D003450 2.4e-185 652.9 465 72.3
Gorai.003G009700 Gossypium raimondii HOM05D002880 ORTHO05D003450 4.1e-185 652.1 460 73.3
Rhsim10G0212300 Rhododendron simsii HOM05D002880 ORTHO05D003450 4.1e-185 652.1 467 73.0
Psat2g154720 Pisum sativum HOM05D002880 ORTHO05D003450 9.1e-185 651.0 466 72.3
vmacro21922 Vaccinium macrocarpon HOM05D002880 ORTHO05D003450 9.1e-185 651.0 466 72.3
vmacro23248 Vaccinium macrocarpon HOM05D002880 ORTHO05D003450 9.1e-185 651.0 466 72.3
vmacro23472 Vaccinium macrocarpon HOM05D002880 ORTHO05D003450 9.1e-185 651.0 466 72.3
PSO675G2090 Papaver somniferum HOM05D002880 ORTHO05D003450 1.2e-184 650.6 466 73.2
Sabra07G0049600 Salix brachista HOM05D002880 ORTHO05D003450 3.5e-184 649.0 465 71.6
Lj2C468G7 Lonicera japonica HOM05D002880 ORTHO05D003450 7.7e-184 647.9 465 73.1
PGR119G1290 Punica granatum HOM05D002880 ORTHO05D003450 7.7e-184 647.9 468 72.2
PSO541G3550 Papaver somniferum HOM05D002880 ORTHO05D003450 1.7e-183 646.7 466 72.7
Sed0027366 Sechium edule HOM05D002880 ORTHO05D003450 1.5e-182 643.7 464 73.3
GSVIVG01018783001 Vitis vinifera HOM05D002880 ORTHO05D003450 1.9e-182 643.3 459 72.3
Medtr5g022000 Medicago truncatula HOM05D002880 ORTHO05D003450 2.5e-182 642.9 467 72.4
TPR.G18181 Trifolium pratense HOM05D002880 ORTHO05D003450 4.2e-182 642.1 461 72.2
Sabra05G0093500 Salix brachista HOM05D002880 ORTHO05D003450 1.6e-181 640.2 468 71.2
CANSAT01G1381 Cannabis sativa HOM05D002880 ORTHO05D003450 3.6e-181 639.0 463 71.9
Sopen02g028690 Solanum pennellii HOM05D002880 ORTHO05D003450 2.3e-180 636.3 464 72.0
Sc07g0000970 Simmondsia chinensis HOM05D002880 ORTHO05D003450 3.0e-180 636.0 465 71.2
Solyc02g083900.3 Solanum lycopersicum HOM05D002880 ORTHO05D003450 3.0e-180 636.0 464 72.0
AUR62029462 Chenopodium quinoa HOM05D002880 ORTHO05D003450 8.8e-180 634.4 466 72.3
AUR62003370 Chenopodium quinoa HOM05D002880 ORTHO05D003450 1.5e-179 633.6 466 72.1
Sed0017656 Sechium edule HOM05D002880 ORTHO05D003450 2.0e-179 633.3 466 71.0
ECA238G3174 Erigeron canadensis HOM05D002880 ORTHO05D003450 4.4e-179 632.1 463 71.5
Cc07_g10710 Coffea canephora HOM05D002880 ORTHO05D003450 7.5e-179 631.3 458 71.6
HanXRQChr13g0414661 Helianthus annuus HOM05D002880 ORTHO05D003450 3.7e-178 629.0 458 72.1
Lsat_1_v5_gn_2_75940 Lactuca sativa HOM05D002880 ORTHO05D003450 1.4e-177 627.1 462 71.9
HanXRQChr14g0441401 Helianthus annuus HOM05D002880 ORTHO05D003450 1.6e-176 623.6 464 71.6
Hund16489 Selenicereus undatus HOM05D002880 ORTHO05D003450 3.5e-176 622.5 463 71.5
MBI09_g12804_MAGBIO Magnolia biondii HOM05D002880 ORTHO05D003450 3.6e-173 612.5 453 70.9
MELO3C007903.2 Cucumis melo HOM05D002880 ORTHO05D003450 8.8e-172 607.8 465 69.7
THA.LOC104804262 Tarenaya hassleriana HOM05D002880 ORTHO05D003450 1.8e-169 600.1 458 67.7
AL3G50950 Arabidopsis lyrata HOM05D002880 ORTHO05D003450 1.6e-168 597.0 462 68.4
AT2G17930 Arabidopsis thaliana HOM05D002880 ORTHO05D003450 2.0e-168 596.7 462 68.2
Sp3g31350 Schrenkiella parvula HOM05D002880 ORTHO05D003450 2.0e-168 596.7 461 67.7
Carub.0003s3206 Capsella rubella HOM05D002880 ORTHO05D003450 1.0e-167 594.3 459 68.2
CARHR108410 Cardamine hirsuta HOM05D002880 ORTHO05D003450 2.3e-167 593.2 459 68.6
THA.LOC104819750 Tarenaya hassleriana HOM05D002880 ORTHO05D003450 2.9e-167 592.8 455 67.3
Thhalv10022516m.g Eutrema salsugineum HOM05D002880 ORTHO05D003450 5.0e-167 592.0 458 68.1
BraA09t36808Z Brassica rapa HOM05D002880 ORTHO05D003450 1.5e-166 590.5 454 68.5
BolC9t54256H Brassica oleracea HOM05D002880 ORTHO05D003450 1.9e-166 590.1 454 68.5
DCAR_025997 Daucus carota HOM05D002880 ORTHO05D003450 3.3e-166 589.3 419 72.3
BcaB08g34776 Brassica carinata HOM05D002880 ORTHO05D003450 5.5e-166 588.6 460 67.8
BcaC04g22939 Brassica carinata HOM05D002880 ORTHO05D003450 7.2e-166 588.2 454 68.3
C09p13660 Brassica napus HOM05D002880 ORTHO05D003450 7.2e-166 588.2 454 68.3
A09p11620 Brassica napus HOM05D002880 ORTHO05D003450 1.2e-165 587.4 454 68.3
A06p33500 Brassica napus HOM05D002880 ORTHO05D003450 1.6e-165 587.0 455 68.1
BraA06t26284Z Brassica rapa HOM05D002880 ORTHO05D003450 1.6e-165 587.0 455 68.1
BcaC01g02877 Brassica carinata HOM05D002880 ORTHO05D003450 1.4e-164 583.9 455 67.9
C03p58840 Brassica napus HOM05D002880 ORTHO05D003450 1.4e-164 583.9 455 67.9
Cpa.g.sc6.250 Carica papaya HOM05D002880 ORTHO05D003450 1.8e-164 583.6 464 67.2
BcaB07g31700 Brassica carinata HOM05D002880 ORTHO05D003450 3.0e-164 582.8 454 67.6
Lj6g0023005 Lotus japonicus HOM05D002880 ORTHO05D003450 1.5e-163 580.5 461 65.9
Thhalv10024177m.g Eutrema salsugineum HOM05D002880 ORTHO05D003450 1.3e-162 577.4 461 66.2
AT4G36080 Arabidopsis thaliana HOM05D002880 ORTHO05D003450 2.8e-162 576.2 459 65.6
Sp7g33860 Schrenkiella parvula HOM05D002880 ORTHO05D003450 1.1e-161 574.3 462 65.2
Zm00001eb329250 Zea mays HOM05D002880 ORTHO05D003450 2.4e-161 573.2 461 64.4
AL7G14960 Arabidopsis lyrata HOM05D002880 ORTHO05D003450 3.2e-161 572.8 461 64.9
Carub.0007s0415 Capsella rubella HOM05D002880 ORTHO05D003450 7.0e-161 571.6 462 64.5
CARHR244480 Cardamine hirsuta HOM05D002880 ORTHO05D003450 1.7e-159 567.0 462 63.4
BolC3t18143H Brassica oleracea HOM05D002880 ORTHO05D003450 6.6e-159 565.1 493 62.7
BcaNung00767 Brassica carinata HOM05D002880 ORTHO05D003450 1.2e-157 560.8 459 65.8
C01p02960 Brassica napus HOM05D002880 ORTHO05D003450 1.2e-157 560.8 459 65.8
BolC1t00282H Brassica oleracea HOM05D002880 ORTHO05D003450 1.2e-157 560.8 459 65.8
Aa31LG8G15100 Aethionema arabicum HOM05D002880 ORTHO05D003450 1.6e-157 560.5 459 63.8
Aa31LG6G13030 Aethionema arabicum HOM05D002880 ORTHO05D003450 5.2e-156 555.4 459 63.8
A01p02660 Brassica napus HOM05D002880 ORTHO05D003450 1.5e-155 553.9 459 65.1
BraA01t00252Z Brassica rapa HOM05D002880 ORTHO05D003450 1.5e-155 553.9 459 65.1
AagrBONN_evm.TU.Sc2ySwM_368.861 Anthoceros agrestis HOM05D002880 ORTHO05D003450 4.3e-134 482.6 488 56.1
Potri.007G057900 Populus trichocarpa HOM05D002880 ORTHO05D003450 7.3e-134 481.9 283 81.3
Pp3c17_20000 Physcomitrium patens HOM05D002880 ORTHO05D003450 2.1e-133 480.3 482 55.2
CAN.G1671.13 Capsicum annuum HOM05D002880 ORTHO05D003450 3.5e-128 463.0 464 57.8
HPP92_000393 Vanilla planifolia HOM05D002880 ORTHO05D003450 5.6e-126 455.7 452 56.0
SMO147G0347 Selaginella moellendorffii HOM05D002880 ORTHO05D003450 2.1e-125 453.8 456 52.9
Mapoly0010s0094 Marchantia polymorpha HOM05D002880 ORTHO05D003450 4.0e-124 449.5 477 53.2
Os07g0645100 Oryza sativa ssp. japonica HOM05D002880 ORTHO05D003450 5.4e-121 439.1 355 63.7
ATR0630G002 Amborella trichopoda HOM05D002880 ORTHO05D003450 8.4e-114 415.2 463 52.1
Nitab4.5_0005660g0020 Nicotiana tabacum HOM05D002880 ORTHO05D003450 1.7e-106 391.0 338 66.0
CBR_g31691 Chara braunii HOM05D002880 ORTHO05D003450 1.4e-105 387.9 520 44.4
Nitab4.5_0003382g0060 Nicotiana tabacum HOM05D002880 ORTHO05D003450 1.4e-105 387.9 302 70.9
unitig_0.g4 Utricularia gibba HOM05D002880 ORTHO05D003450 1.2e-99 368.2 302 66.9
EL10Ac6g15479 Beta vulgaris HOM05D002880 ORTHO05D003450 3.3e-94 350.1 210 81.0
Haze_03764 Corylus avellana HOM05D002880 ORTHO05D003450 1.2e-88 331.6 390 54.4
HPP92_000451 Vanilla planifolia HOM05D002880 ORTHO05D003450 2.5e-81 307.4 267 62.2
SHI08552 Sapria himalayana HOM05D002880 ORTHO05D003450 3.6e-72 276.9 181 71.8
PRCOL_00005144 Prasinoderma coloniale HOM05D002880 ORTHO05D003450 4.7e-72 276.6 459 37.7
Cre02.g088750 Chlamydomonas reinhardtii HOM05D002880 ORTHO05D003450 6.1e-72 276.2 480 36.5
MCO16G028 Micromonas commoda HOM05D002880 ORTHO05D003450 1.8e-68 264.6 485 35.3
QL06p032715 Quercus lobata HOM05D002880 ORTHO05D003450 1.0e-63 248.8 205 65.9
Atru.chr1.4018 Acer truncatum HOM05D002880 ORTHO05D003450 5.2e-63 246.5 128 96.9
Actinidia00879 Actinidia chinensis HOM05D002880 ORTHO05D003450 6.3e-61 239.6 215 60.0
TPR.G18175 Trifolium pratense HOM05D002880 ORTHO05D003450 6.1e-56 223.0 198 62.6
Haze_03765 Corylus avellana HOM05D002880 ORTHO05D003450 1.2e-54 218.8 198 61.1
Lalb_Chr09g0321751 Lupinus albus HOM05D002880 ORTHO05D003450 3.4e-54 217.2 198 61.6
TAR381G0408 Trochodendron aralioides HOM05D002880 ORTHO05D003450 4.4e-54 216.9 205 59.5
CAN.G1671.12 Capsicum annuum HOM05D002880 ORTHO05D003450 6.3e-53 213.0 205 59.0
Cpa.g.sc6.248 Carica papaya HOM05D002880 ORTHO05D003450 1.8e-52 211.5 204 58.3
EL10Ac6g15480 Beta vulgaris HOM05D002880 ORTHO05D003450 9.5e-49 199.1 219 56.2
SHI08553 Sapria himalayana HOM05D002880 ORTHO05D003450 3.4e-46 190.7 205 50.2
Potri.007G057850 Populus trichocarpa HOM05D002880 ORTHO05D003450 1.8e-44 184.9 178 59.6
Ah.03g148750 Amaranthus hybridus HOM05D002880 ORTHO05D003450 2.3e-42 177.9 204 53.9
Cfa023980 Carpinus fangiana HOM05D002880 ORTHO05D003450 1.2e-38 165.6 520 27.1
ATR0630G005 Amborella trichopoda HOM05D002880 ORTHO05D003450 2.6e-38 164.5 199 50.3
HPP92_000448 Vanilla planifolia HOM05D002880 ORTHO05D003450 5.4e-36 156.8 179 53.1
unitig_0.g3 Utricularia gibba HOM05D002880 ORTHO05D003450 3.3e-33 147.5 102 70.6
MBI01_g01265_MAGBIO Magnolia biondii HOM05D000597 ORTHO05D000603 1.2e-30 139.0 90 75.6
Actinidia17494 Actinidia chinensis HOM05D002880 ORTHO05D003450 9.2e-28 129.4 127 58.3
Gohir.A11G175584 Gossypium hirsutum HOM05D002880 ORTHO05D003450 2.7e-27 127.9 108 63.0
Actinidia17493 Actinidia chinensis HOM05D002880 ORTHO05D003450 1.1e-25 122.5 122 51.6
Actinidia00882 Actinidia chinensis HOM05D002880 ORTHO05D003450 3.3e-25 120.9 88 72.7
AL5G13110 Arabidopsis lyrata HOM05D002880 ORTHO05D003450 3.3e-25 120.9 225 41.8
Actinidia17497 Actinidia chinensis HOM05D002880 ORTHO05D003450 8.1e-24 116.3 121 50.4
PGSC0003DMG400003562 Solanum tuberosum HOM05D002880 ORTHO05D003450 4.0e-23 114.0 72 80.6
HPP92_000450 Vanilla planifolia HOM05D002880 ORTHO05D003450 8.4e-21 106.3 55 80.0
Actinidia17489 Actinidia chinensis HOM05D002880 ORTHO05D003450 4.6e-19 100.5 91 64.8
Os07g0645200 Oryza sativa ssp. japonica HOM05D002880 ORTHO05D003450 8.6e-18 96.3 65 75.4
SHI08551 Sapria himalayana HOM05D002880 ORTHO05D003450 5.1e-10 70.5 42 81.0


User provided reference genes

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