Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr1.3775 Acer truncatum HOM05D004380 ORTHO05D005134 9.9e-219 763.5 473 100.0
GSVIVG01013206001 Vitis vinifera HOM05D004380 ORTHO05D005134 4.3e-121 439.1 463 63.3
CiPaw.11G087400 Carya illinoinensis HOM05D004380 ORTHO05D005134 9.5e-121 438.0 463 57.7
Cfa012380 Carpinus fangiana HOM05D004380 ORTHO05D005134 1.1e-119 434.5 484 57.9
Rhsim07G0121900 Rhododendron simsii HOM05D004380 ORTHO05D005134 1.7e-117 427.2 471 61.6
QL03p017813 Quercus lobata HOM05D004380 ORTHO05D005134 2.2e-117 426.8 472 61.4
ClCG03G011240 Citrullus lanatus HOM05D004380 ORTHO05D005134 1.1e-116 424.5 515 48.9
Manes.15G172200 Manihot esculenta HOM05D004380 ORTHO05D005134 4.6e-115 419.1 563 47.8
Dinv25182 Davidia involucrata HOM05D004380 ORTHO05D005134 5.0e-114 415.6 487 57.9
Potri.003G087200 Populus trichocarpa HOM05D004380 ORTHO05D005134 5.0e-114 415.6 509 56.8
vmacro14143 Vaccinium macrocarpon HOM05D004380 ORTHO05D005134 1.5e-113 414.1 471 58.8
TWI81G0890 Tripterygium wilfordii HOM05D004380 ORTHO05D005134 9.5e-113 411.4 564 46.3
Actinidia10879 Actinidia chinensis HOM05D004380 ORTHO05D005134 1.2e-112 411.0 503 59.2
CsaV3_2G035720 Cucumis sativus L. HOM05D004380 ORTHO05D005134 1.2e-112 411.0 510 49.8
Cpa.g.sc69.34 Carica papaya HOM05D004380 ORTHO05D005134 4.7e-112 409.1 460 51.7
Haze_08305 Corylus avellana HOM05D004380 ORTHO05D005134 1.1e-111 407.9 516 61.8
SGA_v2.0_scaffold20G09254 Striga asiatica HOM05D003893 ORTHO05D005167 1.8e-111 407.1 468 54.3
SGA_v2.0_scaffold86G26890 Striga asiatica HOM05D004380 ORTHO05D005134 2.3e-111 406.8 470 55.3
Aa31LG9G15640 Aethionema arabicum HOM05D004380 ORTHO05D005134 2.6e-110 403.3 464 61.4
DCAR_015696 Daucus carota HOM05D004380 ORTHO05D005134 4.4e-110 402.5 449 56.6
Ciclev10033653m.g Citrus clementina HOM05D004380 ORTHO05D005134 7.5e-110 401.7 522 57.3
Lalb_Chr04g0258181 Lupinus albus HOM05D004380 ORTHO05D005134 1.3e-109 401.0 497 52.9
Cc01_g02120 Coffea canephora HOM05D004380 ORTHO05D005134 1.7e-109 400.6 537 57.0
arahy.Tifrunner.gnm1.ann1.522STQ Arachis hypogaea HOM05D004380 ORTHO05D005134 2.2e-109 400.2 465 56.1
Migut.J01084 Erythranthe guttata HOM05D004380 ORTHO05D005134 2.9e-109 399.8 463 52.7
Sed0018208 Sechium edule HOM05D004380 ORTHO05D005134 6.4e-109 398.7 514 47.7
Lsat_1_v5_gn_6_63641 Lactuca sativa HOM05D004380 ORTHO05D005134 1.9e-108 397.1 463 54.4
CAN.G1336.5 Capsicum annuum HOM05D004380 ORTHO05D005134 3.2e-108 396.4 501 57.7
THA.LOC104814403 Tarenaya hassleriana HOM05D004380 ORTHO05D005134 4.1e-108 396.0 524 50.4
Hma1.2p1_0311F.1_g121260 Hydrangea macrophylla HOM05D004380 ORTHO05D005134 4.6e-107 392.5 456 64.3
Medtr8g030840 Medicago truncatula HOM05D004380 ORTHO05D005134 1.7e-106 390.6 499 50.1
Thecc.05G299600 Theobroma cacao HOM05D004380 ORTHO05D005134 1.7e-106 390.6 494 57.1
Lj3g0000626 Lotus japonicus HOM05D004380 ORTHO05D005134 5.6e-105 385.6 499 59.9
ECA233G1538 Erigeron canadensis HOM05D004380 ORTHO05D005134 9.5e-105 384.8 485 60.2
Sabra03G0056900 Salix brachista HOM05D004380 ORTHO05D005134 1.1e-103 381.3 507 54.8
Solyc03g033950.4 Solanum lycopersicum HOM05D004380 ORTHO05D005134 1.4e-103 380.9 526 54.9
Gorai.007G293700 Gossypium raimondii HOM05D004380 ORTHO05D005134 3.1e-103 379.8 551 50.3
Nn6g33684 Nelumbo nucifera HOM05D004380 ORTHO05D005134 5.2e-103 379.0 604 51.7
CANSAT21G1629 Cannabis sativa HOM05D004380 ORTHO05D005134 2.0e-102 377.1 461 59.2
Gohir.A11G262400 Gossypium hirsutum HOM05D004380 ORTHO05D005134 4.4e-102 375.9 550 51.3
PGSC0003DMG400022576 Solanum tuberosum HOM05D004380 ORTHO05D005134 9.9e-102 374.8 528 55.5
RcHm_v2.0_Chr4g0446311 Rosa chinensis HOM05D004380 ORTHO05D005134 1.7e-101 374.0 461 60.3
Peaxi162Scf01164g00006 Petunia axillaris HOM05D004380 ORTHO05D005134 2.2e-101 373.6 552 53.3
AT1G31870 Arabidopsis thaliana HOM05D004380 ORTHO05D005134 6.4e-101 372.1 533 52.0
MD16G1006500 Malus domestica HOM05D004380 ORTHO05D005134 1.9e-100 370.5 461 54.7
VMungo0331G0855 Vigna mungo HOM05D004380 ORTHO05D005134 1.9e-100 370.5 521 53.2
Thhalv10007193m.g Eutrema salsugineum HOM05D004380 ORTHO05D005134 5.4e-100 369.0 528 55.5
Duzib128G0331 Durio zibethinus HOM05D004380 ORTHO05D005134 7.1e-100 368.6 490 49.8
Ah.09g224390 Amaranthus hybridus HOM05D004380 ORTHO05D005134 1.2e-99 367.9 511 55.6
AL1G45970 Arabidopsis lyrata HOM05D004380 ORTHO05D005134 4.6e-99 365.9 517 56.5
Prupe.8G202500 Prunus persica HOM05D004380 ORTHO05D005134 4.6e-99 365.9 460 48.7
Phvul.010G098800 Phaseolus vulgaris HOM05D004380 ORTHO05D005134 1.0e-98 364.8 548 49.3
HanXRQChr16g0500491 Helianthus annuus HOM05D004380 ORTHO05D005134 6.6e-98 362.1 500 49.8
Gohir.D11G272400 Gossypium hirsutum HOM05D004380 ORTHO05D005134 1.1e-97 361.3 552 48.9
BcaB03g13784 Brassica carinata HOM05D004380 ORTHO05D005134 1.9e-97 360.5 509 57.0
Carub.0001s3020 Capsella rubella HOM05D004380 ORTHO05D005134 9.6e-97 358.2 551 52.6
C05p39530 Brassica napus HOM05D004380 ORTHO05D005134 1.2e-96 357.8 509 53.6
BcaC05g27949 Brassica carinata HOM05D004380 ORTHO05D005134 1.6e-96 357.5 509 54.4
FAN17G2609 Fragaria x ananassa HOM05D004380 ORTHO05D005134 2.1e-96 357.1 462 58.7
Nitab4.5_0005084g0010 Nicotiana tabacum HOM05D004380 ORTHO05D005134 2.1e-96 357.1 499 55.7
EL10Ac4g09041 Beta vulgaris HOM05D004380 ORTHO05D005134 8.1e-96 355.1 489 54.2
PSO832G0693 Papaver somniferum HOM05D004380 ORTHO05D005134 8.1e-96 355.1 480 59.8
FAN22G0510 Fragaria x ananassa HOM05D004380 ORTHO05D005134 3.1e-95 353.2 471 58.8
BolC5t32694H Brassica oleracea HOM05D004380 ORTHO05D005134 4.0e-95 352.8 511 53.2
CDE02G1296 Ceratophyllum demersum HOM05D004380 ORTHO05D005134 9.0e-95 351.7 536 51.1
FvH4_4g36560 Fragaria vesca HOM05D004380 ORTHO05D005134 1.2e-94 351.3 462 58.9
FAN12G0331 Fragaria x ananassa HOM05D004380 ORTHO05D005134 1.2e-94 351.3 462 58.9
Glyma.07G070900 Glycine max HOM05D004380 ORTHO05D005134 1.2e-94 351.3 529 46.3
A05p25450 Brassica napus HOM05D004380 ORTHO05D005134 1.5e-94 350.9 510 55.1
BraA05t21429Z Brassica rapa HOM05D004380 ORTHO05D005134 1.5e-94 350.9 510 55.1
FAN07G2732 Fragaria x ananassa HOM05D004380 ORTHO05D005134 2.0e-94 350.5 483 59.2
Sopen03g006700 Solanum pennellii HOM05D004380 ORTHO05D005134 2.6e-94 350.1 516 54.7
Sp1g27590 Schrenkiella parvula HOM05D004380 ORTHO05D005134 3.4e-94 349.7 488 57.4
PSO782G4920 Papaver somniferum HOM05D004380 ORTHO05D005134 4.4e-94 349.4 479 58.7
Psat4g154840 Pisum sativum HOM05D004380 ORTHO05D005134 1.3e-93 347.8 475 52.4
PSO063G6462 Papaver somniferum HOM05D004380 ORTHO05D005134 1.7e-93 347.4 479 59.9
Lj6C290G5 Lonicera japonica HOM05D004380 ORTHO05D005134 3.8e-93 346.3 575 49.0
HanXRQChr12g0372541 Helianthus annuus HOM05D004380 ORTHO05D005134 6.4e-93 345.5 493 50.1
TAR629G2821 Trochodendron aralioides HOM05D004380 ORTHO05D005134 8.4e-93 345.1 468 52.4
Oeu045705.2 Olea europaea HOM05D004380 ORTHO05D005134 1.1e-92 344.7 493 48.1
CARHR031210 Cardamine hirsuta HOM05D004380 ORTHO05D005134 2.4e-92 343.6 530 52.5
COL.COLO4_13527 Corchorus olitorius HOM05D004380 ORTHO05D005134 2.5e-89 333.6 228 73.2
arahy.Tifrunner.gnm1.ann1.MX4EXC Arachis hypogaea HOM05D004380 ORTHO05D005134 9.6e-89 331.6 470 47.2
CiPaw.04G096200 Carya illinoinensis HOM05D004380 ORTHO05D005134 6.2e-88 328.9 464 47.4
unitig_21.g20505 Utricularia gibba HOM05D004380 ORTHO05D005134 4.9e-85 319.3 490 46.1
Aqoxy3G00393 Aquilegia oxysepala HOM05D004380 ORTHO05D005134 9.3e-84 315.1 487 54.0
AUR62007222 Chenopodium quinoa HOM05D004380 ORTHO05D005134 1.2e-83 314.7 528 51.1
Os08g0178300 Oryza sativa ssp. japonica HOM05D004380 ORTHO05D005134 1.8e-82 310.8 507 50.5
CDE11G0710 Ceratophyllum demersum HOM05D004380 ORTHO05D005134 5.6e-81 305.8 534 43.4
CAN.G1823.5 Capsicum annuum HOM05D004380 ORTHO05D005134 7.4e-81 305.4 289 58.1
Haze_08308 Corylus avellana HOM05D004380 ORTHO05D005134 1.3e-80 304.7 451 60.8
AUR62018778 Chenopodium quinoa HOM05D004380 ORTHO05D005134 3.8e-77 293.1 472 51.7
Actinidia31472 Actinidia chinensis HOM05D004380 ORTHO05D005134 1.2e-75 288.1 230 68.7
Nitab4.5_0008421g0010 Nicotiana tabacum HOM05D004380 ORTHO05D005134 5.1e-74 282.7 504 48.8
arahy.Tifrunner.gnm1.ann1.ARJY2C Arachis hypogaea HOM05D004380 ORTHO05D005134 1.5e-73 281.2 264 60.2
Phvul.011G076400 Phaseolus vulgaris HOM05D004380 ORTHO05D005134 1.5e-73 281.2 188 73.4
ATR0665G406 Amborella trichopoda HOM05D004380 ORTHO05D005134 3.3e-73 280.0 218 64.7
THA.LOC104812727 Tarenaya hassleriana HOM05D004380 ORTHO05D005134 2.6e-70 270.4 255 59.2
Mapoly0062s0011 Marchantia polymorpha HOM05D004380 ORTHO05D005134 3.4e-70 270.0 213 64.8
CAN.G248.21 Capsicum annuum HOM05D004380 ORTHO05D005134 1.0e-69 268.5 220 60.9
TPR.G23111 Trifolium pratense HOM05D004380 ORTHO05D005134 3.0e-66 256.9 148 80.4
MELO3C024775.2 Cucumis melo HOM05D004380 ORTHO05D005134 1.5e-65 254.6 421 44.7
Pp3c3_10050 Physcomitrium patens HOM05D004380 ORTHO05D005134 9.7e-65 251.9 223 62.3
Hund11501 Selenicereus undatus HOM05D004380 ORTHO05D005134 8.2e-64 248.8 149 78.5
AagrBONN_evm.TU.Sc2ySwM_117.3835 Anthoceros agrestis HOM05D004380 ORTHO05D005134 9.0e-63 245.4 213 59.2
CARHR062710 Cardamine hirsuta HOM05D004380 ORTHO05D005134 9.0e-63 245.4 179 69.3
Cpa.g.sc69.32 Carica papaya HOM05D004380 ORTHO05D005134 9.0e-63 245.4 157 75.8
arahy.Tifrunner.gnm1.ann1.I1PL9V Arachis hypogaea HOM05D004380 ORTHO05D005134 1.5e-62 244.6 158 74.1
Aa31LG9G6660 Aethionema arabicum HOM05D004380 ORTHO05D005134 2.6e-62 243.8 152 77.6
HPP92_020120 Vanilla planifolia HOM05D004380 ORTHO05D005134 3.4e-62 243.4 167 72.5
Sed0024296 Sechium edule HOM05D004380 ORTHO05D005134 1.0e-61 241.9 180 70.0
HPP92_020130 Vanilla planifolia HOM05D004380 ORTHO05D005134 1.3e-61 241.5 166 72.3
SEGI_39298 Sequoiadendron giganteum HOM05D004380 ORTHO05D005134 1.9e-60 237.7 240 53.8
SMO144G0180 Selaginella moellendorffii HOM05D004380 ORTHO05D005134 8.8e-58 228.8 218 55.0
DCAR_007574 Daucus carota HOM05D004380 ORTHO05D005134 2.4e-55 220.7 149 71.8
SMO118G0163 Selaginella moellendorffii HOM05D004380 ORTHO05D005134 2.6e-54 217.2 220 53.2
arahy.Tifrunner.gnm1.ann1.45D7QY Arachis hypogaea HOM05D004380 ORTHO05D005134 2.5e-52 210.7 158 67.1
CBR_g26347 Chara braunii HOM05D004380 ORTHO05D005134 4.2e-52 209.9 227 50.7
TPR.G20578 Trifolium pratense HOM05D004380 ORTHO05D005134 1.0e-50 205.3 113 79.6
arahy.Tifrunner.gnm1.ann1.MH0ZUI Arachis hypogaea HOM05D004380 ORTHO05D005134 5.7e-49 199.5 160 62.5
Sc22g0001370 Simmondsia chinensis HOM05D004380 ORTHO05D005134 2.5e-44 184.1 437 48.1
Oeu037610.2 Olea europaea HOM05D004380 ORTHO05D005134 3.6e-43 180.3 365 46.3
CSS0001415 Camellia sinensis var. sinensis HOM05D004380 ORTHO05D005134 2.5e-36 157.5 86 79.1
CSS0037993 Camellia sinensis var. sinensis HOM05D004380 ORTHO05D005134 2.5e-36 157.5 86 79.1
Cre01.g003487 Chlamydomonas reinhardtii HOM05D004380 ORTHO05D005134 1.6e-35 154.8 195 46.2
Potri.001G147100 Populus trichocarpa HOM05D004380 ORTHO05D005134 1.0e-34 152.1 432 35.0
MCO15G532 Micromonas commoda HOM05D004380 ORTHO05D005134 4.1e-31 140.2 216 36.1
CSS0014122 Camellia sinensis var. sinensis HOM05D004380 ORTHO05D005134 7.7e-30 136.0 332 44.0
CSS0026269 Camellia sinensis var. sinensis HOM05D004380 ORTHO05D005134 7.7e-30 136.0 332 44.0
Ca_23634_v3 Cicer arietinum L. HOM05D000346 ORTHO05D000326 1.3e-29 135.2 288 49.0
Haze_13061 Corylus avellana HOM05D000001 ORTHO05D010365 4.2e-28 130.2 100 70.0
PRCOL_00005638 Prasinoderma coloniale HOM05D004380 ORTHO05D005134 3.0e-26 124.0 214 38.3
Sp5g21510 Schrenkiella parvula HOM05D004380 ORTHO05D005134 8.8e-26 122.5 84 70.2
QL12p007207 Quercus lobata HOM05D004380 ORTHO05D005134 5.7e-25 119.8 117 61.5
CAN.G1186.1 Capsicum annuum HOM05D004380 ORTHO05D005134 2.8e-24 117.5 174 45.4
Lsat_1_v5_gn_3_2421 Lactuca sativa HOM05D004380 ORTHO05D005134 1.7e-21 108.2 93 62.4
Hund11272 Selenicereus undatus HOM05D004380 ORTHO05D005134 1.1e-20 105.5 100 61.0
Dinv40656 Davidia involucrata HOM05D000301 ORTHO05D000303 4.2e-20 103.6 59 76.3
AL3G52660 Arabidopsis lyrata HOM05D004380 ORTHO05D005134 6.8e-18 96.3 66 62.1
TPR.G11131 Trifolium pratense HOM05D004380 ORTHO05D005134 2.0e-17 94.7 137 47.4
COL.COLO4_33038 Corchorus olitorius HOM05D004380 ORTHO05D005134 5.7e-17 93.2 85 63.5
TPR.G22617 Trifolium pratense HOM05D004380 ORTHO05D005134 9.8e-17 92.4 81 64.2
Lj2C247T7 Lonicera japonica HOM05D004380 ORTHO05D005134 1.3e-16 92.0 76 65.8
SHI10270 Sapria himalayana HOM05D004380 ORTHO05D005134 2.2e-16 91.3 88 60.2
Zm00001eb400590 Zea mays HOM05D004380 ORTHO05D005134 1.1e-12 79.0 105 46.7
Cfa026589 Carpinus fangiana HOM05D004380 ORTHO05D005134 1.9e-12 78.2 139 34.5
HPP92_020129 Vanilla planifolia HOM05D004380 ORTHO05D005134 2.8e-11 74.3 102 41.2
Medtr8g446970 Medicago truncatula HOM05D004380 ORTHO05D005134 6.8e-10 69.7 67 56.7
C05p31200 Brassica napus HOM05D004380 ORTHO05D005134 1.2e-09 68.9 64 57.8
arahy.Tifrunner.gnm1.ann1.FR68MS Arachis hypogaea HOM05D005435 ORTHO05D005134 2.0e-09 68.2 62 67.7
TPR.G17657 Trifolium pratense HOM05D004380 ORTHO05D005134 2.9e-08 64.3 94 43.6
Medtr4g081620 Medicago truncatula HOM05D004380 ORTHO05D005134 4.1e-07 60.5 85 51.8


User provided reference genes

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