Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr1.3739 Acer truncatum HOM05D000538 ORTHO05D000614 1.3e-42 176.0 90 100.0
Atru.chr1.3753 Acer truncatum HOM05D000538 ORTHO05D000614 2.7e-40 168.3 90 96.7
Ciclev10015528m.g Citrus clementina HOM05D000538 ORTHO05D000614 1.1e-17 93.2 88 52.3
Atru.chr1.3738 Acer truncatum HOM05D007812 ORTHO05D009912 1.8e-12 75.9 42 95.2
Ciclev10011975m.g Citrus clementina HOM05D000538 ORTHO05D000614 1.8e-12 75.9 66 50.0
COL.COLO4_17402 Corchorus olitorius HOM05D000538 ORTHO05D000614 1.8e-12 75.9 91 44.0
Duzib268G1429 Durio zibethinus HOM05D000538 ORTHO05D000614 2.4e-12 75.5 92 43.5
Gohir.A01G040800 Gossypium hirsutum HOM05D000538 ORTHO05D000614 2.4e-12 75.5 92 47.8
Gorai.002G037800 Gossypium raimondii HOM05D000538 ORTHO05D000614 3.1e-12 75.1 92 47.8
Manes.07G017600 Manihot esculenta HOM05D000538 ORTHO05D000614 5.3e-12 74.3 86 40.7
Actinidia36906 Actinidia chinensis HOM05D004209 ORTHO05D004970 9.0e-12 73.6 64 51.6
Thecc.07G148000 Theobroma cacao HOM05D000538 ORTHO05D000614 9.0e-12 73.6 83 42.2
Sed0014375 Sechium edule HOM05D000538 ORTHO05D000614 1.2e-11 73.2 69 52.2
MELO3C007351.2 Cucumis melo HOM05D000538 ORTHO05D000614 3.4e-11 71.6 69 47.8
Potri.009G088400 Populus trichocarpa HOM05D000538 ORTHO05D000614 3.4e-11 71.6 87 40.2
Manes.16G016900 Manihot esculenta HOM05D000538 ORTHO05D000614 4.4e-11 71.2 86 39.5
HanXRQChr03g0087661 Helianthus annuus HOM05D000538 ORTHO05D000614 7.6e-11 70.5 101 42.6
CsaV3_6G049420 Cucumis sativus L. HOM05D000538 ORTHO05D000614 9.9e-11 70.1 68 45.6
Duzib213G0266 Durio zibethinus HOM05D000538 ORTHO05D000614 9.9e-11 70.1 88 42.0
Lj2C275T5 Lonicera japonica HOM05D000538 ORTHO05D000614 9.9e-11 70.1 69 44.9
CiPaw.09G080200 Carya illinoinensis HOM05D000538 ORTHO05D000614 1.3e-10 69.7 88 37.5
TWI38G1831 Tripterygium wilfordii HOM05D000538 ORTHO05D000614 1.3e-10 69.7 70 41.4
MD05G1335900 Malus domestica HOM05D000538 ORTHO05D000614 2.2e-10 68.9 67 47.8
Manes.17G030100 Manihot esculenta HOM05D000538 ORTHO05D000614 2.2e-10 68.9 96 39.6
Sed0011252 Sechium edule HOM05D000538 ORTHO05D000614 2.2e-10 68.9 69 47.8
Lsat_1_v5_gn_1_81901 Lactuca sativa HOM05D000538 ORTHO05D000614 2.9e-10 68.6 92 38.0
Prupe.4G029400 Prunus persica HOM05D000538 ORTHO05D000614 2.9e-10 68.6 66 45.5
Duzib213G0460 Durio zibethinus HOM05D000538 ORTHO05D000614 3.8e-10 68.2 84 44.0
Sabra16G0183500 Salix brachista HOM05D000538 ORTHO05D000614 4.9e-10 67.8 65 46.2
Potri.001G293900 Populus trichocarpa HOM05D000538 ORTHO05D000614 6.4e-10 67.4 87 36.8
Sabra11G0087400 Salix brachista HOM05D000538 ORTHO05D000614 1.1e-09 66.6 87 39.1
MELO3C027126.2 Cucumis melo HOM05D000538 ORTHO05D000614 1.9e-09 65.9 69 44.9
Lj6g0024738 Lotus japonicus HOM05D000538 ORTHO05D000614 2.4e-09 65.5 61 50.8
Gorai.013G021200 Gossypium raimondii HOM05D000538 ORTHO05D000614 3.2e-09 65.1 93 38.7
RcHm_v2.0_Chr5g0004541 Rosa chinensis HOM05D000538 ORTHO05D000614 5.4e-09 64.3 58 46.6
Cfa016408 Carpinus fangiana HOM05D000538 ORTHO05D000614 9.3e-09 63.5 64 45.3
Dinv18944 Davidia involucrata HOM05D000538 ORTHO05D000614 1.2e-08 63.2 90 33.3
Sabra11G0087800 Salix brachista HOM05D000538 ORTHO05D000614 1.6e-08 62.8 90 36.7
TWI38G2228 Tripterygium wilfordii HOM05D000538 ORTHO05D000614 1.6e-08 62.8 65 40.0
TWI38G2394 Tripterygium wilfordii HOM05D000538 ORTHO05D000614 1.6e-08 62.8 66 42.4
Ca_17144_v3 Cicer arietinum L. HOM05D000538 ORTHO05D000614 2.1e-08 62.4 70 42.9
TWI39G0036 Tripterygium wilfordii HOM05D000538 ORTHO05D000614 2.1e-08 62.4 69 43.5
Ca_00207_v3 Cicer arietinum L. HOM05D000538 ORTHO05D000614 2.7e-08 62.0 73 37.0
Gohir.A13G018100 Gossypium hirsutum HOM05D000538 ORTHO05D000614 2.7e-08 62.0 88 39.8
Dinv22316 Davidia involucrata HOM05D000359 ORTHO05D000251 4.6e-08 61.2 85 40.0
Gohir.D10G203100 Gossypium hirsutum HOM05D000538 ORTHO05D000614 4.6e-08 61.2 93 39.8
Gohir.D13G019101 Gossypium hirsutum HOM05D000538 ORTHO05D000614 4.6e-08 61.2 93 37.6
Gorai.011G228000 Gossypium raimondii HOM05D000538 ORTHO05D000614 4.6e-08 61.2 93 39.8
HanXRQChr01g0019011 Helianthus annuus HOM05D000538 ORTHO05D000614 6.0e-08 60.8 91 37.4
Cpa.g.sc1622.1 Carica papaya HOM05D000538 ORTHO05D000614 7.8e-08 60.5 65 44.6
Gohir.A10G196200 Gossypium hirsutum HOM05D000538 ORTHO05D000614 7.8e-08 60.5 93 38.7
ClCG01G022290 Citrullus lanatus HOM05D000538 ORTHO05D000614 1.0e-07 60.1 69 43.5
Haze_06686 Corylus avellana HOM05D000538 ORTHO05D000614 1.0e-07 60.1 56 46.4
Ca_26565_v3 Cicer arietinum L. HOM05D055061 ORTHO05D044364 1.7e-07 59.3 87 37.9
FvH4_3g02930 Fragaria vesca HOM05D000538 ORTHO05D000614 1.7e-07 59.3 72 38.9
FAN21G0633 Fragaria x ananassa HOM05D000538 ORTHO05D000614 1.7e-07 59.3 72 37.5
FAN21G1131 Fragaria x ananassa HOM05D000538 ORTHO05D000614 1.7e-07 59.3 72 37.5
QL05p077181 Quercus lobata HOM05D000538 ORTHO05D000614 1.7e-07 59.3 54 48.1
QL93p0073_1288 Quercus lobata HOM05D000538 ORTHO05D000614 1.7e-07 59.3 54 48.1
Lj2g0017985 Lotus japonicus HOM05D000538 ORTHO05D000614 2.3e-07 58.9 60 46.7
Rhsim13G0162300 Rhododendron simsii HOM05D000538 ORTHO05D000614 2.3e-07 58.9 56 42.9
VMungo0540G1345 Vigna mungo HOM05D000538 ORTHO05D000614 3.0e-07 58.5 66 43.9
FAN25G1625 Fragaria x ananassa HOM05D000538 ORTHO05D000614 3.9e-07 58.2 72 37.5
Lj2g0028107 Lotus japonicus HOM05D000538 ORTHO05D000614 3.9e-07 58.2 66 48.5
Lj6g0011510 Lotus japonicus HOM05D000538 ORTHO05D000614 5.1e-07 57.8 80 36.2
Prupe.3G046700 Prunus persica HOM05D002395 ORTHO05D000614 5.1e-07 57.8 56 44.6
HanXRQChr15g0482761 Helianthus annuus HOM05D000538 ORTHO05D000614 6.6e-07 57.4 88 28.4
Phvul.006G196300 Phaseolus vulgaris HOM05D000538 ORTHO05D000614 8.7e-07 57.0 91 38.5
TAR627G0243 Trochodendron aralioides HOM05D000538 ORTHO05D000614 8.7e-07 57.0 53 49.1
Glyma.15G063300 Glycine max HOM05D000538 ORTHO05D000614 1.5e-06 56.2 66 40.9
Lalb_Chr05g0228411 Lupinus albus HOM05D000538 ORTHO05D000614 1.5e-06 56.2 90 31.1
Gohir.D04G098033 Gossypium hirsutum HOM05D005127 ORTHO05D006022 2.5e-06 55.5 56 51.8
Gorai.005G117100 Gossypium raimondii HOM05D005127 ORTHO05D006022 2.5e-06 55.5 56 51.8
Psat5g127240 Pisum sativum HOM05D000538 ORTHO05D000614 2.5e-06 55.5 70 40.0
CDE05G1513 Ceratophyllum demersum HOM05D000538 ORTHO05D000614 3.3e-06 55.1 63 39.7
Lalb_Chr16g0392201 Lupinus albus HOM05D000538 ORTHO05D000614 3.3e-06 55.1 85 34.1
Nn1g03728 Nelumbo nucifera HOM05D000538 ORTHO05D000614 3.3e-06 55.1 56 41.1
CANSAT54G1163 Cannabis sativa HOM05D000538 ORTHO05D000614 4.3e-06 54.7 59 37.3
ECA236G5057 Erigeron canadensis HOM05D000538 ORTHO05D000614 4.3e-06 54.7 64 32.8
Glyma.13G251000 Glycine max HOM05D000538 ORTHO05D000614 4.3e-06 54.7 52 48.1
Nn4g26474 Nelumbo nucifera HOM05D000538 ORTHO05D000614 4.3e-06 54.7 56 41.1
ECA248G3523 Erigeron canadensis HOM05D000538 ORTHO05D000614 5.6e-06 54.3 74 40.5
HanXRQChr05g0130791 Helianthus annuus HOM05D000538 ORTHO05D000614 7.3e-06 53.9 83 32.5
Rhsim11G0019400 Rhododendron simsii HOM05D000538 ORTHO05D000614 7.3e-06 53.9 67 37.3
QL01p044471 Quercus lobata HOM05D000538 ORTHO05D000614 9.6e-06 53.5 54 42.6


User provided reference genes

Program Settings