Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr1.3697 Acer truncatum HOM05D006521 ORTHO05D008087 1.7e-76 289.3 146 100.0
Atru.chr4.229 Acer truncatum HOM05D006521 ORTHO05D008087 3.8e-76 288.1 146 99.3
Atru.chr1.3715 Acer truncatum HOM05D006521 ORTHO05D008087 1.1e-75 286.6 146 98.6
Ciclev10025891m.g Citrus clementina HOM05D006521 ORTHO05D008087 1.0e-65 253.4 152 83.6
CANSAT01G1058 Cannabis sativa HOM05D006521 ORTHO05D008087 3.0e-65 251.9 152 82.9
Cpa.g.sc20.228 Carica papaya HOM05D006521 ORTHO05D008087 2.5e-64 248.8 151 81.5
Duzib147G0857 Durio zibethinus HOM05D006521 ORTHO05D008087 1.6e-63 246.1 153 80.4
Glyma.11G238100 Glycine max HOM05D006521 ORTHO05D008087 2.4e-62 242.3 147 82.3
Hma1.2p1_0011F.1_g007170 Hydrangea macrophylla HOM05D006521 ORTHO05D008087 4.0e-62 241.5 144 79.2
Thecc.01G106200 Theobroma cacao HOM05D006521 ORTHO05D008087 4.0e-62 241.5 153 78.4
TWI77G0511 Tripterygium wilfordii HOM05D006521 ORTHO05D008087 4.0e-62 241.5 152 78.9
Glyma.18G019200 Glycine max HOM05D006521 ORTHO05D008087 6.9e-62 240.7 146 81.5
Aqoxy5G01962 Aquilegia oxysepala HOM05D006521 ORTHO05D008087 9.0e-62 240.4 151 76.8
Eucgr.I00394 Eucalyptus grandis HOM05D006521 ORTHO05D008087 2.0e-61 239.2 151 78.1
RcHm_v2.0_Chr2g0115391 Rosa chinensis HOM05D006521 ORTHO05D008087 2.0e-61 239.2 147 81.6
Dinv00937 Davidia involucrata HOM05D006521 ORTHO05D008087 2.6e-61 238.8 146 78.8
Dinv16313 Davidia involucrata HOM05D006521 ORTHO05D008087 2.6e-61 238.8 146 78.8
Duzib264G0874 Durio zibethinus HOM05D006521 ORTHO05D008087 2.6e-61 238.8 153 77.1
PGR004G2411 Punica granatum HOM05D006521 ORTHO05D008087 3.4e-61 238.4 146 80.8
TAR376G0467 Trochodendron aralioides HOM05D006521 ORTHO05D008087 3.4e-61 238.4 151 77.5
QL06p050323 Quercus lobata HOM05D006521 ORTHO05D008087 4.5e-61 238.0 145 82.1
MELO3C007776.2 Cucumis melo HOM05D006521 ORTHO05D008087 5.8e-61 237.7 151 77.5
CsaV3_6G045650 Cucumis sativus L. HOM05D006521 ORTHO05D008087 5.8e-61 237.7 151 77.5
AUR62003763 Chenopodium quinoa HOM05D006521 ORTHO05D008087 7.6e-61 237.3 148 78.4
ClCG01G018970 Citrullus lanatus HOM05D006521 ORTHO05D008087 7.6e-61 237.3 151 76.8
Gorai.007G061700 Gossypium raimondii HOM05D006521 ORTHO05D008087 9.9e-61 236.9 153 77.1
VMungo1383G3636 Vigna mungo HOM05D006521 ORTHO05D008087 9.9e-61 236.9 146 80.8
Ah.02g122760 Amaranthus hybridus HOM05D006521 ORTHO05D008087 1.3e-60 236.5 149 76.5
Ca_16545_v3 Cicer arietinum L. HOM05D006521 ORTHO05D008087 1.3e-60 236.5 146 80.8
Phvul.001G250400 Phaseolus vulgaris HOM05D006521 ORTHO05D008087 1.3e-60 236.5 146 80.8
Prupe.3G102100 Prunus persica HOM05D006521 ORTHO05D008087 1.3e-60 236.5 147 79.6
TWI74G1358 Tripterygium wilfordii HOM05D006521 ORTHO05D008087 1.3e-60 236.5 151 78.8
arahy.Tifrunner.gnm1.ann1.IK9JFE Arachis hypogaea HOM05D006521 ORTHO05D008087 1.7e-60 236.1 154 75.3
Cc07_g15580 Coffea canephora HOM05D006521 ORTHO05D008087 1.7e-60 236.1 144 81.2
Lj6g0010661 Lotus japonicus HOM05D006521 ORTHO05D008087 1.7e-60 236.1 146 80.8
Psat5g088760 Pisum sativum HOM05D006521 ORTHO05D008087 2.2e-60 235.7 146 80.1
Carub.0007s0173 Capsella rubella HOM05D006521 ORTHO05D008087 2.9e-60 235.3 151 75.5
AUR62002034 Chenopodium quinoa HOM05D006521 ORTHO05D008087 2.9e-60 235.3 148 78.4
Lj4A881T25 Lonicera japonica HOM05D006521 ORTHO05D008087 2.9e-60 235.3 146 80.8
Potri.005G079300 Populus trichocarpa HOM05D006521 ORTHO05D008087 2.9e-60 235.3 147 79.6
THA.LOC104824871 Tarenaya hassleriana HOM05D006521 ORTHO05D008087 2.9e-60 235.3 151 75.5
arahy.Tifrunner.gnm1.ann1.2NAN3W Arachis hypogaea HOM05D006521 ORTHO05D008087 3.8e-60 235.0 154 75.3
Lalb_Chr11g0075241 Lupinus albus HOM05D006521 ORTHO05D008087 3.8e-60 235.0 149 77.9
Sc16g0005450 Simmondsia chinensis HOM05D006521 ORTHO05D008087 3.8e-60 235.0 150 77.3
Thhalv10025314m.g Eutrema salsugineum HOM05D006521 ORTHO05D008087 4.9e-60 234.6 151 75.5
Manes.12G138400 Manihot esculenta HOM05D006521 ORTHO05D008087 6.4e-60 234.2 154 78.6
THA.LOC104807700 Tarenaya hassleriana HOM05D006521 ORTHO05D008087 8.4e-60 233.8 151 74.8
Ah.02g120360 Amaranthus hybridus HOM05D006521 ORTHO05D008087 1.4e-59 233.0 149 75.2
AT4G39820 Arabidopsis thaliana HOM05D006521 ORTHO05D008087 1.4e-59 233.0 151 74.8
Aa31LG6G15450 Aethionema arabicum HOM05D006521 ORTHO05D008087 1.9e-59 232.6 151 74.2
PSO447G0171 Papaver somniferum HOM05D006521 ORTHO05D008087 1.9e-59 232.6 149 75.2
Gorai.008G103700 Gossypium raimondii HOM05D006521 ORTHO05D008087 2.4e-59 232.3 153 76.5
TPR.G22881 Trifolium pratense HOM05D006521 ORTHO05D008087 2.4e-59 232.3 146 78.1
AL7G12040 Arabidopsis lyrata HOM05D006521 ORTHO05D008087 3.2e-59 231.9 151 74.2
Medtr3g087760 Medicago truncatula HOM05D006521 ORTHO05D008087 3.2e-59 231.9 146 79.5
SalBow3G0008 Salvia bowleyana HOM05D006521 ORTHO05D008087 3.2e-59 231.9 147 78.9
HanXRQChr16g0527921 Helianthus annuus HOM05D006521 ORTHO05D008087 5.4e-59 231.1 143 78.3
SGA_v2.0_scaffold2G01323 Striga asiatica HOM05D006521 ORTHO05D008087 5.4e-59 231.1 147 78.9
Oeu053565.1 Olea europaea HOM05D006521 ORTHO05D008087 9.3e-59 230.3 147 77.6
Sed0002886 Sechium edule HOM05D006521 ORTHO05D008087 9.3e-59 230.3 149 75.8
PSO210G2459 Papaver somniferum HOM05D006521 ORTHO05D008087 1.2e-58 229.9 149 73.8
ECA234G2647 Erigeron canadensis HOM05D006521 ORTHO05D008087 1.6e-58 229.6 146 77.4
ECA238G1388 Erigeron canadensis HOM05D001700 ORTHO05D002131 1.6e-58 229.6 149 77.2
FAN19G2752 Fragaria x ananassa HOM05D006521 ORTHO05D008087 1.6e-58 229.6 146 80.1
FAN23G2501 Fragaria x ananassa HOM05D006521 ORTHO05D008087 1.6e-58 229.6 146 80.1
CARHR246880 Cardamine hirsuta HOM05D006521 ORTHO05D008087 2.7e-58 228.8 151 73.5
Sp7g36070 Schrenkiella parvula HOM05D006521 ORTHO05D008087 3.5e-58 228.4 151 74.2
ECA238G2228 Erigeron canadensis HOM05D006521 ORTHO05D008087 4.6e-58 228.0 149 76.5
FvH4_1g21530 Fragaria vesca HOM05D006521 ORTHO05D008087 4.6e-58 228.0 146 79.5
Lsat_1_v5_gn_4_21220 Lactuca sativa HOM05D006521 ORTHO05D008087 6.0e-58 227.6 146 78.8
EL10Ac6g15070 Beta vulgaris HOM05D006521 ORTHO05D008087 1.8e-57 226.1 149 73.2
Lsat_1_v5_gn_2_67800 Lactuca sativa HOM05D006521 ORTHO05D008087 1.8e-57 226.1 146 75.3
FAN28G0591 Fragaria x ananassa HOM05D006521 ORTHO05D008087 2.3e-57 225.7 146 78.8
DCAR_011503 Daucus carota HOM05D006521 ORTHO05D008087 3.0e-57 225.3 148 75.7
Migut.H02388 Erythranthe guttata HOM05D006521 ORTHO05D008087 2.5e-56 222.2 149 75.2
Nitab4.5_0000715g0180 Nicotiana tabacum HOM05D006521 ORTHO05D008087 2.5e-56 222.2 145 77.2
Nitab4.5_0005597g0010 Nicotiana tabacum HOM05D006521 ORTHO05D008087 3.3e-56 221.9 145 77.2
Rhsim10G0157900 Rhododendron simsii HOM05D006521 ORTHO05D008087 4.3e-56 221.5 144 75.0
Sopen05g030360 Solanum pennellii HOM05D006521 ORTHO05D008087 5.6e-56 221.1 145 77.2
SHI11594 Sapria himalayana HOM05D006521 ORTHO05D008087 7.4e-56 220.7 151 73.5
C03p78340 Brassica napus HOM05D006521 ORTHO05D008087 1.3e-55 219.9 148 71.6
BolC3t20094H Brassica oleracea HOM05D006521 ORTHO05D008087 1.3e-55 219.9 148 71.6
CAN.G1494.2 Capsicum annuum HOM05D006521 ORTHO05D008087 1.3e-55 219.9 144 75.7
Solyc05g051840.1 Solanum lycopersicum HOM05D006521 ORTHO05D008087 1.6e-55 219.5 145 76.6
CDE10G1235 Ceratophyllum demersum HOM05D006521 ORTHO05D008087 2.8e-55 218.8 150 70.0
A08p23330 Brassica napus HOM05D006521 ORTHO05D008087 3.7e-55 218.4 148 70.9
BraA08t34287Z Brassica rapa HOM05D006521 ORTHO05D008087 3.7e-55 218.4 148 70.9
PGSC0003DMG400021832 Solanum tuberosum HOM05D006521 ORTHO05D008087 3.7e-55 218.4 145 75.9
HanXRQChr15g0471711 Helianthus annuus HOM05D006521 ORTHO05D008087 4.8e-55 218.0 143 73.4
Sabra05G0065200 Salix brachista HOM05D006521 ORTHO05D004292 4.8e-55 218.0 142 76.1
Sed0013283 Sechium edule HOM05D006521 ORTHO05D008087 1.1e-54 216.9 151 69.5
HPP92_016137 Vanilla planifolia HOM05D006521 ORTHO05D008087 3.4e-53 211.8 146 71.9
ATR0789G153 Amborella trichopoda HOM05D006521 ORTHO05D008087 4.5e-53 211.5 151 66.9
Hund13498 Selenicereus undatus HOM05D006521 ORTHO05D008087 2.9e-52 208.8 142 71.1
unitig_32.g11814 Utricularia gibba HOM05D006521 ORTHO05D008087 2.9e-52 208.8 147 70.1
C01p00850 Brassica napus HOM05D006521 ORTHO05D008087 1.5e-48 196.4 139 69.1
BcaNung00904 Brassica carinata HOM05D006521 ORTHO05D008087 2.5e-48 195.7 116 79.3
Nn1g05268 Nelumbo nucifera HOM05D006521 ORTHO05D008087 8.2e-47 190.7 151 65.6
COL.COLO4_09911 Corchorus olitorius HOM05D006521 ORTHO05D008087 1.8e-46 189.5 102 86.3
SEGI_26188 Sequoiadendron giganteum HOM05D006521 ORTHO05D008087 1.8e-46 189.5 151 60.9
CiPaw.03G138700 Carya illinoinensis HOM05D006521 ORTHO05D008087 3.1e-46 188.7 151 65.6
Haze_24978 Corylus avellana HOM05D006521 ORTHO05D008087 9.0e-46 187.2 151 64.9
Cfa002704 Carpinus fangiana HOM05D006521 ORTHO05D008087 6.5e-44 181.0 151 62.9
Os02g0550400 Oryza sativa ssp. japonica HOM05D006521 ORTHO05D008087 2.5e-43 179.1 146 61.6
HanXRQChr10g0288811 Helianthus annuus HOM05D006521 ORTHO05D008087 1.1e-38 163.7 105 77.1
Peaxi162Scf00295g00033 Petunia axillaris HOM05D006521 ORTHO05D008087 7.7e-37 157.5 116 69.8
SMO353G0213 Selaginella moellendorffii HOM05D006521 ORTHO05D008087 2.9e-36 155.6 150 54.7
Mapoly0165s0018 Marchantia polymorpha HOM05D006521 ORTHO05D008087 3.6e-34 148.7 148 51.4
AagrBONN_evm.TU.Sc2ySwM_368.767 Anthoceros agrestis HOM05D006521 ORTHO05D008087 7.9e-34 147.5 147 48.3
Pp3c22_3810 Physcomitrium patens HOM05D006521 ORTHO05D008087 2.5e-32 142.5 146 48.6
Lj4A883T21 Lonicera japonica HOM05D006521 ORTHO05D008087 7.4e-32 141.0 76 88.2
Pp3c19_5060 Physcomitrium patens HOM05D006521 ORTHO05D008087 1.4e-30 136.7 146 45.9
BcaNung05326 Brassica carinata HOM05D006521 ORTHO05D008087 1.0e-25 120.6 97 58.8
CBR_g34484 Chara braunii HOM05D006521 ORTHO05D008087 8.8e-25 117.5 115 48.7
Actinidia36602 Actinidia chinensis HOM05D006521 ORTHO05D008087 7.4e-24 114.4 84 67.9
Pp3c10_9400 Physcomitrium patens HOM05D006521 ORTHO05D008087 1.7e-23 113.2 146 36.3
Pp3c14_5890 Physcomitrium patens HOM05D006521 ORTHO05D008087 8.2e-23 110.9 146 34.9
TAR636G0192 Trochodendron aralioides HOM05D006521 ORTHO05D008087 5.5e-19 98.2 80 62.5
PRCOL_00001846 Prasinoderma coloniale HOM05D006521 ORTHO05D008087 4.4e-08 62.0 80 41.2
A01p00740 Brassica napus HOM05D006521 ORTHO05D008087 6.3e-07 58.2 56 51.8


User provided reference genes

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