Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr1.3654 Acer truncatum HOM05D005168 ORTHO05D006358 1.1e-124 449.9 222 100.0
Ciclev10003775m.g Citrus clementina HOM05D005168 ORTHO05D006358 4.1e-42 175.6 121 67.8
TWI56G1449 Tripterygium wilfordii HOM05D005168 ORTHO05D006358 2.6e-36 156.4 126 61.1
THA.LOC104811420 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 4.4e-36 155.6 121 62.8
Aa31LG4G6030 Aethionema arabicum HOM05D005168 ORTHO05D006358 7.5e-36 154.8 121 61.2
THA.LOC104825468 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 9.8e-36 154.5 121 62.0
Cpa.g.sc58.102 Carica papaya HOM05D005168 ORTHO05D006358 2.2e-35 153.3 121 57.9
THA.LOC104825467 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 6.4e-35 151.8 121 61.2
AL5G14600 Arabidopsis lyrata HOM05D005168 ORTHO05D006358 8.3e-35 151.4 121 61.2
A07p16030 Brassica napus HOM05D005168 ORTHO05D006358 5.4e-34 148.7 122 61.5
BraA07t29331Z Brassica rapa HOM05D005168 ORTHO05D006358 5.4e-34 148.7 122 61.5
Psat5g045240 Pisum sativum HOM05D005168 ORTHO05D006358 5.4e-34 148.7 121 62.0
BcaB03g14336 Brassica carinata HOM05D005168 ORTHO05D006358 7.1e-34 148.3 122 61.5
BcaB03g14344 Brassica carinata HOM05D005168 ORTHO05D006358 7.1e-34 148.3 122 61.5
C07p23400 Brassica napus HOM05D005168 ORTHO05D006358 7.1e-34 148.3 122 61.5
BolC7t42872H Brassica oleracea HOM05D005168 ORTHO05D006358 7.1e-34 148.3 122 61.5
CARHR020540 Cardamine hirsuta HOM05D005168 ORTHO05D006358 9.2e-34 147.9 121 60.3
CiPaw.07G147200 Carya illinoinensis HOM05D005168 ORTHO05D006358 1.2e-33 147.5 121 60.3
Ca_00384_v3 Cicer arietinum L. HOM05D005168 ORTHO05D006358 1.6e-33 147.1 121 61.2
Thhalv10009132m.g Eutrema salsugineum HOM05D005168 ORTHO05D006358 1.6e-33 147.1 122 61.5
Lj1g0018211 Lotus japonicus HOM05D005168 ORTHO05D006358 2.1e-33 146.7 121 60.3
AT3G25940 Arabidopsis thaliana HOM05D005168 ORTHO05D006358 2.7e-33 146.4 122 60.7
BraA06t24725Z Brassica rapa HOM05D005168 ORTHO05D006358 2.7e-33 146.4 122 60.7
Sp1g17830 Schrenkiella parvula HOM05D005168 ORTHO05D006358 2.7e-33 146.4 122 60.7
BcaC05g25900 Brassica carinata HOM05D005168 ORTHO05D006358 3.5e-33 146.0 122 60.7
C05p18550 Brassica napus HOM05D005168 ORTHO05D006358 3.5e-33 146.0 122 60.7
Thhalv10019327m.g Eutrema salsugineum HOM05D005168 ORTHO05D006358 3.5e-33 146.0 122 61.5
QL01p031168 Quercus lobata HOM05D005168 ORTHO05D006358 6.0e-33 145.2 120 60.0
BolC5t30566H Brassica oleracea HOM05D005168 ORTHO05D006358 7.8e-33 144.8 122 60.7
BcaB07g32021 Brassica carinata HOM05D005168 ORTHO05D006358 1.0e-32 144.4 129 57.4
A06p16200 Brassica napus HOM05D005168 ORTHO05D006358 1.7e-32 143.7 122 60.7
CANSAT11G0916 Cannabis sativa HOM05D005168 ORTHO05D006358 2.3e-32 143.3 121 58.7
Hma1.2p1_0733F.1_g210170 Hydrangea macrophylla HOM05D005168 ORTHO05D006358 3.0e-32 142.9 116 61.2
Medtr3g102420 Medicago truncatula HOM05D005168 ORTHO05D006358 3.0e-32 142.9 119 60.5
Sed0007604 Sechium edule HOM05D005168 ORTHO05D006358 3.9e-32 142.5 121 58.7
Haze_22662 Corylus avellana HOM05D005168 ORTHO05D006358 5.1e-32 142.1 127 56.7
CARHR146930 Cardamine hirsuta HOM05D005168 ORTHO05D006358 8.6e-32 141.4 121 57.9
Haze_17776 Corylus avellana HOM05D005168 ORTHO05D006358 1.1e-31 141.0 127 56.7
MELO3C011355.2 Cucumis melo HOM05D005168 ORTHO05D006358 1.5e-31 140.6 121 58.7
Carub.0005s0380 Capsella rubella HOM05D005168 ORTHO05D006358 1.9e-31 140.2 121 57.9
CsaV3_2G024260 Cucumis sativus L. HOM05D005168 ORTHO05D006358 3.3e-31 139.4 121 56.2
arahy.Tifrunner.gnm1.ann1.TKX6L5 Arachis hypogaea HOM05D005168 ORTHO05D006358 4.3e-31 139.0 123 56.9
Thecc.08G047200 Theobroma cacao HOM05D005168 ORTHO05D006358 9.5e-31 137.9 121 54.5
Cfa012889 Carpinus fangiana HOM05D005168 ORTHO05D006358 1.2e-30 137.5 121 57.0
Lalb_Chr11g0067001 Lupinus albus HOM05D005168 ORTHO05D006358 1.2e-30 137.5 119 59.7
arahy.Tifrunner.gnm1.ann1.GU7A1M Arachis hypogaea HOM05D005168 ORTHO05D006358 1.6e-30 137.1 123 56.1
CSS0004439 Camellia sinensis var. sinensis HOM05D005168 ORTHO05D006358 2.1e-30 136.7 122 55.7
CSS0038486 Camellia sinensis var. sinensis HOM05D005168 ORTHO05D006358 3.6e-30 136.0 122 55.7
MD08G1010500 Malus domestica HOM05D005168 ORTHO05D006358 3.6e-30 136.0 122 58.2
PSO541G4324 Papaver somniferum HOM05D005168 ORTHO05D006358 3.6e-30 136.0 124 54.8
PSO675G5410 Papaver somniferum HOM05D005168 ORTHO05D006358 3.6e-30 136.0 124 54.8
PGR031G0142 Punica granatum HOM05D005168 ORTHO05D006358 3.6e-30 136.0 113 57.5
Eucgr.C01258 Eucalyptus grandis HOM05D005168 ORTHO05D006358 4.7e-30 135.6 113 56.6
Eucgr.H00960 Eucalyptus grandis HOM05D005168 ORTHO05D006358 4.7e-30 135.6 113 57.5
Nitab4.5_0000337g0010 Nicotiana tabacum HOM05D005168 ORTHO05D006358 6.2e-30 135.2 129 51.2
Nn3g19859 Nelumbo nucifera HOM05D005168 ORTHO05D006358 1.1e-29 134.4 120 54.2
Phvul.001G175600 Phaseolus vulgaris HOM05D005168 ORTHO05D006358 3.1e-29 132.9 118 55.9
SGA_v2.0_scaffold19G08553 Striga asiatica HOM05D005168 ORTHO05D006358 3.1e-29 132.9 120 51.7
SGA_v2.0_scaffold47G17500 Striga asiatica HOM05D005168 ORTHO05D006358 3.1e-29 132.9 120 51.7
CAN.G727.4 Capsicum annuum HOM05D005168 ORTHO05D006358 6.8e-29 131.7 120 54.2
Nitab4.5_0003251g0060 Nicotiana tabacum HOM05D005168 ORTHO05D006358 6.8e-29 131.7 120 52.5
Glyma.03G178900 Glycine max HOM05D005168 ORTHO05D006358 1.5e-28 130.6 118 54.2
MSTRG.22344 Avicennia marina HOM05D005168 ORTHO05D006358 3.4e-28 129.4 118 50.8
Duzib093G1099 Durio zibethinus HOM05D005168 ORTHO05D006358 3.4e-28 129.4 122 54.1
Actinidia37940 Actinidia chinensis HOM05D005168 ORTHO05D006358 7.6e-28 128.3 121 52.9
VMungo1080G1160 Vigna mungo HOM05D005168 ORTHO05D006358 7.6e-28 128.3 119 55.5
DCAR_015742 Daucus carota HOM05D005168 ORTHO05D006358 9.9e-28 127.9 120 51.7
Os03g0711700 Oryza sativa ssp. japonica HOM05D005168 ORTHO05D006358 1.3e-27 127.5 125 52.0
Peaxi162Scf00553g00216 Petunia axillaris HOM05D005168 ORTHO05D006358 1.7e-27 127.1 120 50.8
Gohir.A06G002600 Gossypium hirsutum HOM05D005168 ORTHO05D006358 2.9e-27 126.3 113 54.9
Gohir.D06G005600 Gossypium hirsutum HOM05D005168 ORTHO05D006358 2.9e-27 126.3 113 54.9
Gorai.010G002800 Gossypium raimondii HOM05D005168 ORTHO05D006358 2.9e-27 126.3 113 54.9
Solyc04g054510.4 Solanum lycopersicum HOM05D005168 ORTHO05D006358 2.9e-27 126.3 120 51.7
PGSC0003DMG400022038 Solanum tuberosum HOM05D005168 ORTHO05D006358 2.9e-27 126.3 120 51.7
CDE11G0347 Ceratophyllum demersum HOM05D005168 ORTHO05D006358 3.8e-27 125.9 161 43.5
Prupe.6G147400 Prunus persica HOM05D005168 ORTHO05D006358 3.8e-27 125.9 122 54.9
Manes.14G063600 Manihot esculenta HOM05D005168 ORTHO05D006358 6.4e-27 125.2 121 50.4
TAR622G0958 Trochodendron aralioides HOM05D005168 ORTHO05D006358 2.4e-26 123.2 120 50.0
GSVIVG01009945001 Vitis vinifera HOM05D005168 ORTHO05D006358 2.4e-26 123.2 125 48.8
Lsat_1_v5_gn_2_14120 Lactuca sativa HOM05D005168 ORTHO05D006358 5.4e-26 122.1 108 54.6
Cc10_g01450 Coffea canephora HOM05D005168 ORTHO05D006358 2.1e-25 120.2 116 49.1
HanXRQChr04g0101211 Helianthus annuus HOM05D005168 ORTHO05D006358 2.1e-25 120.2 126 46.8
Potri.013G015000 Populus trichocarpa HOM05D005168 ORTHO05D006358 2.7e-25 119.8 121 48.8
vmacro04368 Vaccinium macrocarpon HOM05D005168 ORTHO05D006358 3.5e-25 119.4 118 45.8
Migut.N03173 Erythranthe guttata HOM05D005168 ORTHO05D006358 6.0e-25 118.6 118 45.8
SalBow8G1113 Salvia bowleyana HOM05D005168 ORTHO05D006358 1.7e-24 117.1 118 45.8
ECA238G1857 Erigeron canadensis HOM05D005168 ORTHO05D006358 6.6e-24 115.2 111 51.4
Sc15g0004820 Simmondsia chinensis HOM05D005168 ORTHO05D006358 1.1e-23 114.4 125 48.8
Zm00001eb054840 Zea mays HOM05D005168 ORTHO05D006358 2.5e-23 113.2 114 51.8
EL10Ac1g02165 Beta vulgaris HOM05D005168 ORTHO05D006358 8.1e-22 108.2 125 47.2
Sopen04g024330 Solanum pennellii HOM05D005168 ORTHO05D006358 1.4e-21 107.5 106 50.9
Hund09202 Selenicereus undatus HOM05D005168 ORTHO05D006358 5.2e-21 105.5 125 46.4
unitig_22.g6797 Utricularia gibba HOM05D005168 ORTHO05D006358 8.9e-21 104.8 118 42.4
Rhsim07G0250400 Rhododendron simsii HOM05D005168 ORTHO05D006358 1.2e-20 104.4 120 45.0
FAN23G3095 Fragaria x ananassa HOM05D005168 ORTHO05D006358 2.6e-20 103.2 125 48.0
FvH4_1g24780 Fragaria vesca HOM05D005168 ORTHO05D006358 7.6e-20 101.7 118 47.5
Dinv40488 Davidia involucrata HOM05D005168 ORTHO05D006358 2.9e-19 99.8 93 50.5
SEGI_04309 Sequoiadendron giganteum HOM05D005168 ORTHO05D006358 8.4e-19 98.2 122 45.9
Eucgr.L01842 Eucalyptus grandis HOM05D005168 ORTHO05D006358 1.1e-18 97.8 68 66.2
Sabra13G0016900 Salix brachista HOM05D005168 ORTHO05D006358 5.4e-18 95.5 99 46.5
Sabra13G0012900 Salix brachista HOM05D005168 ORTHO05D006358 2.1e-17 93.6 96 46.9
Aqoxy2G01931 Aquilegia oxysepala HOM05D005168 ORTHO05D006358 3.5e-17 92.8 117 46.2
Mapoly0043s0107 Marchantia polymorpha HOM05D005168 ORTHO05D006358 3.5e-17 92.8 121 42.1
AagrBONN_evm.TU.Sc2ySwM_368.3393 Anthoceros agrestis HOM05D005168 ORTHO05D006358 2.5e-15 86.7 119 39.5
RcHm_v2.0_Chr2g0124111 Rosa chinensis HOM05D005168 ORTHO05D006358 2.5e-15 86.7 121 43.0
ATR0057G015 Amborella trichopoda HOM05D005168 ORTHO05D006358 3.3e-15 86.3 89 47.2
AL1G32870 Arabidopsis lyrata HOM05D005168 ORTHO05D006358 1.6e-14 84.0 64 64.1
HPP92_028162 Vanilla planifolia HOM05D005168 ORTHO05D006358 1.6e-14 84.0 85 47.1
BcaC05g25904 Brassica carinata HOM05D005168 ORTHO05D006358 4.8e-14 82.4 86 52.3
Eucgr.F02832 Eucalyptus grandis HOM05D005168 ORTHO05D006358 6.2e-14 82.0 76 50.0
MD15G1010600 Malus domestica HOM05D005168 ORTHO05D006358 4.0e-13 79.3 54 64.8
Pp3c24_7070 Physcomitrium patens HOM05D005168 ORTHO05D006358 4.0e-13 79.3 156 31.4
SMO351G0141 Selaginella moellendorffii HOM05D005168 ORTHO05D006358 4.0e-13 79.3 119 39.5
AT1G20065 Arabidopsis thaliana HOM05D005168 ORTHO05D006358 2.6e-12 76.6 62 58.1
TPR.G9182 Trifolium pratense HOM05D005168 ORTHO05D006358 4.5e-12 75.9 84 47.6
Ca_15982_v3 Cicer arietinum L. HOM05D005168 ORTHO05D006358 1.9e-10 70.5 53 56.6
Cre01.g018000 Chlamydomonas reinhardtii HOM05D005168 ORTHO05D006358 2.4e-10 70.1 122 32.0
Glyma.19G179600 Glycine max HOM05D005168 ORTHO05D006358 2.4e-10 70.1 62 50.0
CDE09G0329 Ceratophyllum demersum HOM05D005168 ORTHO05D006358 1.2e-09 67.8 72 48.6
Aqoxy6G02286 Aquilegia oxysepala HOM05D005168 ORTHO05D006358 3.5e-09 66.2 111 35.1
THA.LOC109116732 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 4.6e-09 65.9 53 60.4
Glyma.06G213500 Glycine max HOM05D005168 ORTHO05D006358 6.0e-09 65.5 68 50.0
Glyma.08G301902 Glycine max HOM05D005168 ORTHO05D006358 1.0e-08 64.7 84 42.9
Glyma.17G201200 Glycine max HOM05D005168 ORTHO05D006358 1.0e-08 64.7 68 50.0
Glyma.08G246200 Glycine max HOM05D005168 ORTHO05D006358 1.8e-08 63.9 54 55.6
Glyma.11G172400 Glycine max HOM05D005168 ORTHO05D006358 2.3e-08 63.5 70 48.6
ClCG08G014180 Citrullus lanatus HOM05D005168 ORTHO05D006358 3.9e-08 62.8 91 38.5
Lj4A21T59 Lonicera japonica HOM05D005168 ORTHO05D006358 5.1e-08 62.4 77 39.0
ClCG08G014170 Citrullus lanatus HOM05D005168 ORTHO05D006358 4.3e-07 59.3 44 63.6
CBR_g23850 Chara braunii HOM05D005168 ORTHO05D006358 7.4e-07 58.5 49 55.1
FAN26G0870 Fragaria x ananassa HOM05D005168 ORTHO05D006358 2.8e-06 56.6 72 44.4


User provided reference genes

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