Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr1.3497 Acer truncatum HOM05D005732 ORTHO05D007062 2.9e-112 408.7 223 100.0
Ciclev10026574m.g Citrus clementina HOM05D005732 ORTHO05D007062 4.3e-55 218.8 172 68.6
Potri.003G050400 Populus trichocarpa HOM05D005732 ORTHO05D007062 2.0e-52 209.9 229 55.9
Haze_15828 Corylus avellana HOM05D005732 ORTHO05D007062 9.2e-50 201.1 168 62.5
Cfa003665 Carpinus fangiana HOM05D005732 ORTHO05D007062 6.0e-49 198.4 219 53.4
Sabra03G0028400 Salix brachista HOM05D005732 ORTHO05D007062 1.0e-48 197.6 221 53.4
Potri.001G188000 Populus trichocarpa HOM05D005732 ORTHO05D007062 1.3e-48 197.2 219 53.9
TWI18G0404 Tripterygium wilfordii HOM05D005732 ORTHO05D007062 1.3e-48 197.2 192 58.9
TWI75G0681 Tripterygium wilfordii HOM05D005732 ORTHO05D007062 2.3e-48 196.4 192 56.8
Thecc.06G097400 Theobroma cacao HOM05D005732 ORTHO05D007062 3.9e-48 195.7 219 52.1
Cpa.g.c29422 Carica papaya HOM05D005732 ORTHO05D007062 3.3e-47 192.6 187 58.8
MD09G1205900 Malus domestica HOM05D005732 ORTHO05D007062 4.3e-47 192.2 180 58.3
Gohir.A02G118700 Gossypium hirsutum HOM05D005732 ORTHO05D007062 9.5e-47 191.0 173 60.1
CiPaw.01G232900 Carya illinoinensis HOM05D005732 ORTHO05D007062 2.1e-46 189.9 167 61.1
Duzib192G0605 Durio zibethinus HOM05D005732 ORTHO05D007062 6.2e-46 188.3 178 59.6
Sabra01G0152800 Salix brachista HOM05D005732 ORTHO05D007062 3.1e-45 186.0 241 49.4
Glyma.07G017000 Glycine max HOM05D005732 ORTHO05D007062 6.8e-45 184.9 218 51.8
Manes.04G132400 Manihot esculenta HOM05D005732 ORTHO05D007062 8.9e-45 184.5 219 51.6
Gorai.003G063300 Gossypium raimondii HOM05D005732 ORTHO05D007062 1.5e-44 183.7 209 53.1
RcHm_v2.0_Chr2g0140051 Rosa chinensis HOM05D005732 ORTHO05D007062 1.5e-44 183.7 194 53.1
Lalb_Chr04g0262901 Lupinus albus HOM05D005732 ORTHO05D007062 2.0e-44 183.3 192 54.2
COL.COLO4_30485 Corchorus olitorius HOM05D000181 ORTHO05D008575 2.6e-44 183.0 169 58.6
FAN02G4216 Fragaria x ananassa HOM05D005732 ORTHO05D007062 2.6e-44 183.0 189 53.4
CSS0002541 Camellia sinensis var. sinensis HOM05D005732 ORTHO05D007062 3.4e-44 182.6 221 51.6
FAN05G5290 Fragaria x ananassa HOM05D005732 ORTHO05D007062 3.4e-44 182.6 189 54.0
Medtr8g013900 Medicago truncatula HOM05D005732 ORTHO05D007062 3.4e-44 182.6 168 58.9
TAR383G0371 Trochodendron aralioides HOM05D005732 ORTHO05D007062 3.4e-44 182.6 168 57.1
Lj3g0008110 Lotus japonicus HOM05D005732 ORTHO05D007062 5.8e-44 181.8 194 53.1
VMungo0331G0354 Vigna mungo HOM05D005732 ORTHO05D007062 1.3e-43 180.6 194 53.6
CANSAT56G1056 Cannabis sativa HOM05D005732 ORTHO05D007062 1.7e-43 180.3 193 53.4
Phvul.010G146500 Phaseolus vulgaris HOM05D005732 ORTHO05D007062 1.7e-43 180.3 194 53.6
FAN09G2308 Fragaria x ananassa HOM05D005732 ORTHO05D007062 2.9e-43 179.5 189 52.9
Hma1.2p1_1689F.1_g297591 Hydrangea macrophylla HOM05D005732 ORTHO05D007062 2.9e-43 179.5 225 47.6
Manes.11G035100 Manihot esculenta HOM05D005732 ORTHO05D007062 2.9e-43 179.5 221 50.7
Actinidia09002 Actinidia chinensis HOM05D005732 ORTHO05D007062 3.8e-43 179.1 220 47.7
FAN14G0018 Fragaria x ananassa HOM05D005732 ORTHO05D007062 3.8e-43 179.1 194 51.5
CSS0032474 Camellia sinensis var. sinensis HOM05D005732 ORTHO05D007062 4.9e-43 178.7 200 54.0
arahy.Tifrunner.gnm1.ann1.U1FWF5 Arachis hypogaea HOM05D005732 ORTHO05D007062 6.4e-43 178.3 209 50.7
arahy.Tifrunner.gnm1.ann1.Z2G3LM Arachis hypogaea HOM05D005732 ORTHO05D007062 6.4e-43 178.3 209 50.7
Dinv37994 Davidia involucrata HOM05D005732 ORTHO05D007062 6.4e-43 178.3 222 47.7
Cc04_g02710 Coffea canephora HOM05D005732 ORTHO05D007062 8.4e-43 177.9 167 57.5
FvH4_6g32160 Fragaria vesca HOM05D005732 ORTHO05D007062 1.1e-42 177.6 194 51.0
PGR102G2433 Punica granatum HOM05D005732 ORTHO05D007062 1.4e-42 177.2 183 53.6
TAR626G0582 Trochodendron aralioides HOM05D005732 ORTHO05D007062 2.4e-42 176.4 218 46.3
Lj5A55G45 Lonicera japonica HOM05D005732 ORTHO05D007062 3.2e-42 176.0 170 54.7
Aqoxy7G01470 Aquilegia oxysepala HOM05D005732 ORTHO05D007062 4.1e-42 175.6 194 52.6
MBI04_g40322_MAGBIO Magnolia biondii HOM05D005732 ORTHO05D007062 4.1e-42 175.6 170 53.5
MSTRG.22648 Avicennia marina HOM05D005732 ORTHO05D007062 9.2e-42 174.5 168 57.7
AUR62031884 Chenopodium quinoa HOM05D005732 ORTHO05D007062 9.2e-42 174.5 161 59.0
Eucgr.F03064 Eucalyptus grandis HOM05D005732 ORTHO05D007062 9.2e-42 174.5 194 51.0
Gohir.D03G059300 Gossypium hirsutum HOM05D005732 ORTHO05D007062 9.2e-42 174.5 173 57.2
Psat4g197440 Pisum sativum HOM05D005732 ORTHO05D007062 2.1e-41 173.3 193 50.3
THA.LOC104817966 Tarenaya hassleriana HOM05D005732 ORTHO05D007062 2.1e-41 173.3 171 53.8
AUR62022181 Chenopodium quinoa HOM05D005732 ORTHO05D007062 4.6e-41 172.2 198 52.5
GSVIVG01017014001 Vitis vinifera HOM05D005732 ORTHO05D007062 7.8e-41 171.4 144 62.5
PSO173G0088 Papaver somniferum HOM05D005732 ORTHO05D007062 1.3e-40 170.6 172 52.9
QL05p020542 Quercus lobata HOM05D005732 ORTHO05D007062 1.3e-40 170.6 213 47.4
Prupe.3G061300 Prunus persica HOM05D005732 ORTHO05D007062 2.3e-40 169.9 199 47.7
Sed0001710 Sechium edule HOM05D005732 ORTHO05D007062 2.3e-40 169.9 207 48.3
Oeu050609.1 Olea europaea HOM05D005732 ORTHO05D007062 3.0e-40 169.5 182 52.7
CSS0006657 Camellia sinensis var. sinensis HOM05D005732 ORTHO05D007062 3.9e-40 169.1 189 54.0
Nn2g11615 Nelumbo nucifera HOM05D005732 ORTHO05D007062 3.9e-40 169.1 159 57.9
Migut.I00910 Erythranthe guttata HOM05D005732 ORTHO05D007062 5.1e-40 168.7 168 54.8
SalBow1G6954 Salvia bowleyana HOM05D005732 ORTHO05D007062 5.1e-40 168.7 169 55.6
SalBow2G2342 Salvia bowleyana HOM05D005732 ORTHO05D007062 6.6e-40 168.3 169 55.6
vmacro16985 Vaccinium macrocarpon HOM05D005732 ORTHO05D007062 1.1e-39 167.5 215 49.3
MELO3C024451.2 Cucumis melo HOM05D005732 ORTHO05D007062 3.3e-39 166.0 167 53.3
CsaV3_7G035420 Cucumis sativus L. HOM05D005732 ORTHO05D007062 3.3e-39 166.0 173 52.6
DCAR_016197 Daucus carota HOM05D005732 ORTHO05D007062 3.3e-39 166.0 169 53.8
Os01g0725400 Oryza sativa ssp. japonica HOM05D005732 ORTHO05D007062 5.6e-39 165.2 168 52.4
Thhalv10021518m.g Eutrema salsugineum HOM05D005732 ORTHO05D007062 9.6e-39 164.5 183 49.7
Sp3g14670 Schrenkiella parvula HOM05D005732 ORTHO05D007062 9.6e-39 164.5 168 51.2
AL3G29050 Arabidopsis lyrata HOM05D005732 ORTHO05D007062 1.2e-38 164.1 171 50.9
BcaB06g25723 Brassica carinata HOM05D005732 ORTHO05D007062 1.2e-38 164.1 183 48.1
Sc15g0001950 Simmondsia chinensis HOM05D005732 ORTHO05D007062 1.2e-38 164.1 194 50.5
Lsat_1_v5_gn_1_34600 Lactuca sativa HOM05D005732 ORTHO05D007062 1.6e-38 163.7 171 52.0
Aa31LG8G3450 Aethionema arabicum HOM05D004877 ORTHO05D005942 2.1e-38 163.3 169 50.3
EL10Ac9g22102 Beta vulgaris HOM05D005732 ORTHO05D007062 2.8e-38 162.9 193 50.3
C05p50190 Brassica napus HOM05D004877 ORTHO05D005942 2.8e-38 162.9 183 48.1
BolC5t33769H Brassica oleracea HOM05D004877 ORTHO05D005942 2.8e-38 162.9 183 48.1
THA.LOC104813551 Tarenaya hassleriana HOM05D005732 ORTHO05D007062 3.6e-38 162.5 147 57.1
AT3G16300 Arabidopsis thaliana HOM05D005732 ORTHO05D007062 4.7e-38 162.2 173 49.7
BcaC05g28895 Brassica carinata HOM05D005732 ORTHO05D007062 4.7e-38 162.2 183 48.1
PSO832G1217 Papaver somniferum HOM05D005732 ORTHO05D007062 6.2e-38 161.8 172 51.7
CiPaw.02G147000 Carya illinoinensis HOM05D005732 ORTHO05D007062 1.4e-37 160.6 221 44.8
Hund06653 Selenicereus undatus HOM05D005732 ORTHO05D007062 1.4e-37 160.6 215 44.7
HanXRQChr09g0275891 Helianthus annuus HOM05D005732 ORTHO05D007062 1.8e-37 160.2 180 49.4
Carub.0003s1605 Capsella rubella HOM05D005732 ORTHO05D007062 3.1e-37 159.5 186 46.2
BraA05t22147Z Brassica rapa HOM05D005732 ORTHO05D007062 4.0e-37 159.1 183 47.0
Lsat_1_v5_gn_4_99921 Lactuca sativa HOM05D005732 ORTHO05D007062 4.0e-37 159.1 178 51.1
ECA247G0174 Erigeron canadensis HOM05D005732 ORTHO05D007062 6.9e-37 158.3 173 48.6
HanXRQChr02g0032191 Helianthus annuus HOM05D005732 ORTHO05D007062 6.9e-37 158.3 188 46.8
CARHR091510 Cardamine hirsuta HOM05D005732 ORTHO05D007062 8.9e-37 157.9 181 48.1
MSTRG.11037 Avicennia marina HOM05D005732 ORTHO05D007062 1.2e-36 157.5 168 54.8
Sopen03g039690 Solanum pennellii HOM05D005732 ORTHO05D007062 2.6e-36 156.4 169 50.9
Solyc03g120870.3 Solanum lycopersicum HOM05D005732 ORTHO05D007062 3.4e-36 156.0 169 50.3
PGSC0003DMG400002535 Solanum tuberosum HOM05D005732 ORTHO05D007062 7.6e-36 154.8 169 50.3
Carub.0002s2773 Capsella rubella HOM05D005732 ORTHO05D007062 1.3e-35 154.1 173 49.1
DCAR_026348 Daucus carota HOM05D005732 ORTHO05D007062 3.8e-35 152.5 174 48.9
HanXRQChr16g0501231 Helianthus annuus HOM05D005732 ORTHO05D007062 6.4e-35 151.8 172 49.4
BcaB04g18894 Brassica carinata HOM05D005732 ORTHO05D007062 8.4e-35 151.4 165 47.3
TPR.G35018 Trifolium pratense HOM05D005732 ORTHO05D007062 8.4e-35 151.4 180 50.6
AT1G79780 Arabidopsis thaliana HOM05D005732 ORTHO05D007062 1.1e-34 151.0 174 48.3
Duzib160G0019 Durio zibethinus HOM05D005732 ORTHO05D007062 2.4e-34 149.8 134 61.2
Lj9A511T51 Lonicera japonica HOM05D005732 ORTHO05D007062 3.2e-34 149.4 202 45.5
AL2G41770 Arabidopsis lyrata HOM05D005732 ORTHO05D007062 7.1e-34 148.3 169 47.9
BolC3t17024H Brassica oleracea HOM05D005732 ORTHO05D007062 7.1e-34 148.3 167 45.5
BraA03t13125Z Brassica rapa HOM05D005732 ORTHO05D007062 9.3e-34 147.9 168 45.8
BcaC01g03830 Brassica carinata HOM05D005732 ORTHO05D007062 1.2e-33 147.5 167 44.9
BolC3t17097H Brassica oleracea HOM05D005732 ORTHO05D007062 1.2e-33 147.5 167 44.9
Ca_23241_v3 Cicer arietinum L. HOM05D005732 ORTHO05D007062 1.6e-33 147.1 168 50.6
C03p48190 Brassica napus HOM05D005732 ORTHO05D007062 2.1e-33 146.7 160 45.0
ECA232G1272 Erigeron canadensis HOM05D000181 ORTHO05D008575 2.1e-33 146.7 173 47.4
A03p39750 Brassica napus HOM05D005732 ORTHO05D007062 2.7e-33 146.4 167 46.1
Aa31LG4G50 Aethionema arabicum HOM05D005732 ORTHO05D007062 1.3e-32 144.1 178 46.6
Peaxi162Scf00038g00842 Petunia axillaris HOM05D005732 ORTHO05D007062 5.1e-32 142.1 153 50.3
Thhalv10019180m.g Eutrema salsugineum HOM05D005732 ORTHO05D007062 1.1e-31 141.0 162 47.5
C06p28700 Brassica napus HOM05D005732 ORTHO05D007062 1.3e-30 137.5 169 45.0
unitig_46.g18459 Utricularia gibba HOM05D005732 ORTHO05D007062 1.3e-30 137.5 151 51.0
Sp5g35990 Schrenkiella parvula HOM05D005732 ORTHO05D007062 1.6e-30 137.1 168 45.2
A07p26310 Brassica napus HOM05D005732 ORTHO05D007062 2.1e-30 136.7 175 44.0
BraA07t30275Z Brassica rapa HOM05D005732 ORTHO05D007062 2.1e-30 136.7 175 44.0
MBI19_g26309_MAGBIO Magnolia biondii HOM05D005732 ORTHO05D007062 2.8e-30 136.3 169 45.6
BolC6t38039H Brassica oleracea HOM05D005732 ORTHO05D007062 3.6e-30 136.0 168 44.6
Rhsim12G0202300 Rhododendron simsii HOM05D005732 ORTHO05D007062 1.1e-29 134.4 204 44.1
SGA_v2.0_scaffold69G23330 Striga asiatica HOM05D004877 ORTHO05D005942 6.9e-29 131.7 124 56.5
MBI04_g44953_MAGBIO Magnolia biondii HOM05D005732 ORTHO05D007062 2.9e-27 126.3 109 58.7
Prupe.3G065500 Prunus persica HOM05D005732 ORTHO05D007062 3.8e-27 125.9 125 54.4
CDE02G4152 Ceratophyllum demersum HOM05D005732 ORTHO05D007062 2.5e-23 113.2 155 40.6
Lj9C524T15 Lonicera japonica HOM05D005732 ORTHO05D007062 8.1e-22 108.2 168 39.9
ClCG09G000040 Citrullus lanatus HOM05D005732 ORTHO05D007062 2.2e-19 100.1 96 52.1
ATR0705G122 Amborella trichopoda HOM05D005732 ORTHO05D007062 4.3e-15 85.9 150 38.0
CARHR074750 Cardamine hirsuta HOM05D005732 ORTHO05D007062 2.8e-14 83.2 76 55.3
vmacro17018 Vaccinium macrocarpon HOM05D005732 ORTHO05D007062 4.8e-14 82.4 155 38.7
ATR0705G087 Amborella trichopoda HOM05D005732 ORTHO05D007062 5.3e-13 79.0 63 60.3
Actinidia39142 Actinidia chinensis HOM05D004877 ORTHO05D005942 5.8e-12 75.5 80 51.2
CARHR049040 Cardamine hirsuta HOM05D005732 ORTHO05D007062 3.9e-08 62.8 40 67.5
MBI14_g11685_MAGBIO Magnolia biondii HOM05D005509 ORTHO05D006411 3.9e-08 62.8 183 29.5
PGSC0003DMG400027734 Solanum tuberosum HOM05D005509 ORTHO05D006411 1.1e-07 61.2 161 32.9
Sopen04g005600 Solanum pennellii HOM05D005509 ORTHO05D006411 1.5e-07 60.8 161 32.9
TAR622G0113 Trochodendron aralioides HOM05D003184 ORTHO05D000394 3.3e-07 59.7 152 32.2
Hund20028 Selenicereus undatus HOM05D005509 ORTHO05D006411 4.3e-07 59.3 195 27.7
ECA238G2577 Erigeron canadensis HOM05D005509 ORTHO05D006411 5.7e-07 58.9 120 33.3
Nitab4.5_0001831g0030 Nicotiana tabacum HOM05D005509 ORTHO05D006411 7.4e-07 58.5 120 32.5
Nn2g10410 Nelumbo nucifera HOM05D005509 ORTHO05D006411 1.6e-06 57.4 159 30.8
Dinv30452 Davidia involucrata HOM05D005732 ORTHO05D007062 2.8e-06 56.6 73 45.2
Lj1A1206T66 Lonicera japonica HOM05D000748 ORTHO05D000394 2.8e-06 56.6 157 25.5
Nitab4.5_0014743g0010 Nicotiana tabacum HOM05D005509 ORTHO05D006411 2.8e-06 56.6 120 31.7
Sp5g07080 Schrenkiella parvula HOM05D005509 ORTHO05D006411 2.8e-06 56.6 170 30.0
Thecc.10G045900 Theobroma cacao HOM05D005509 ORTHO05D006411 2.8e-06 56.6 150 30.7
Gohir.D09G234600 Gossypium hirsutum HOM05D001151 ORTHO05D001504 3.7e-06 56.2 165 31.5
Lsat_1_v5_gn_5_50001 Lactuca sativa HOM05D001151 ORTHO05D001504 3.7e-06 56.2 158 27.8
HPP92_018398 Vanilla planifolia HOM05D001151 ORTHO05D001504 3.7e-06 56.2 183 29.5
CiPaw.01G284800 Carya illinoinensis HOM05D005509 ORTHO05D006411 4.8e-06 55.8 186 28.5
CsaV3_1G000220 Cucumis sativus L. HOM05D003184 ORTHO05D000394 4.8e-06 55.8 164 30.5
Potri.008G205000 Populus trichocarpa HOM05D001151 ORTHO05D001504 4.8e-06 55.8 163 32.5
TWI63G1706 Tripterygium wilfordii HOM05D005509 ORTHO05D006411 4.8e-06 55.8 161 29.2
Actinidia18321 Actinidia chinensis HOM05D003184 ORTHO05D000394 6.3e-06 55.5 154 27.3
BcaC07g39857 Brassica carinata HOM05D005509 ORTHO05D006411 6.3e-06 55.5 170 30.0
Thhalv10010742m.g Eutrema salsugineum HOM05D005509 ORTHO05D006411 6.3e-06 55.5 175 29.7
HanXRQChr03g0080171 Helianthus annuus HOM05D001151 ORTHO05D001504 8.2e-06 55.1 167 31.1
Nn2g12800 Nelumbo nucifera HOM05D005509 ORTHO05D006411 8.2e-06 55.1 120 32.5
Potri.008G053500 Populus trichocarpa HOM05D005509 ORTHO05D006411 8.2e-06 55.1 183 28.4
Sed0018254 Sechium edule HOM05D005509 ORTHO05D006411 8.2e-06 55.1 184 28.8
GSVIVG01016570001 Vitis vinifera HOM05D005509 ORTHO05D006411 8.2e-06 55.1 172 30.2


User provided reference genes

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