Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr1.3155 Acer truncatum HOM05D010226 ORTHO05D011017 2.4e-96 355.5 182 100.0
Atru.chr9.683 Acer truncatum HOM05D000002 ORTHO05D000047 5.8e-34 148.3 81 90.1
Rhsim11G0109000 Rhododendron simsii HOM05D000002 ORTHO05D000047 1.1e-24 117.5 141 47.5
Rhsim10G0073900 Rhododendron simsii HOM05D000002 ORTHO05D000047 2.4e-16 89.7 127 44.1
TPR.G15993 Trifolium pratense HOM05D000002 ORTHO05D000001 2.4e-16 89.7 154 37.0
Hma1.2p1_1214F.1_g267560 Hydrangea macrophylla HOM05D000002 ORTHO05D000047 9.3e-16 87.8 167 37.1
QL05p014573 Quercus lobata HOM05D000002 ORTHO05D000001 1.6e-15 87.0 209 33.0
QL11p016085 Quercus lobata HOM05D000002 ORTHO05D000001 4.6e-15 85.5 209 33.0
QL04p083856 Quercus lobata HOM05D000002 ORTHO05D000001 1.8e-14 83.6 201 31.8
Manes.16G017966 Manihot esculenta HOM05D000002 ORTHO05D000047 5.1e-14 82.0 160 36.2
Rhsim09G0014100 Rhododendron simsii HOM05D000002 ORTHO05D000001 1.1e-13 80.9 161 34.8
Rhsim09G0021000 Rhododendron simsii HOM05D000002 ORTHO05D000047 1.1e-13 80.9 161 36.0
RhsimUnG0055800 Rhododendron simsii HOM05D000002 ORTHO05D000047 1.5e-13 80.5 197 34.0
MD12G1150100 Malus domestica HOM05D000002 ORTHO05D000001 1.9e-13 80.1 162 32.7
Rhsim06G0133100 Rhododendron simsii HOM05D004563 ORTHO05D002944 5.6e-13 78.6 153 39.2
Rhsim10G0106300 Rhododendron simsii HOM05D000002 ORTHO05D000001 7.4e-13 78.2 161 34.8
Rhsim10G0107100 Rhododendron simsii HOM05D000002 ORTHO05D000001 7.4e-13 78.2 161 34.8
MD04G1051300 Malus domestica HOM05D000002 ORTHO05D000001 9.6e-13 77.8 159 35.2
RcHm_v2.0_Chr1g0320771 Rosa chinensis HOM05D000002 ORTHO05D000001 2.1e-12 76.6 110 43.6
MD17G1267900 Malus domestica HOM05D000002 ORTHO05D000001 4.8e-12 75.5 153 34.6
AUR62028232 Chenopodium quinoa HOM05D000002 ORTHO05D000001 1.1e-11 74.3 157 33.1
MD05G1298000 Malus domestica HOM05D000002 ORTHO05D000001 1.4e-11 73.9 132 42.4
FvH4_4g00781 Fragaria vesca HOM05D000002 ORTHO05D000001 1.8e-11 73.6 124 37.1
Nn2g15241 Nelumbo nucifera HOM05D010226 ORTHO05D011017 1.8e-11 73.6 158 36.7
Atru.chr13.2553 Acer truncatum HOM05D000002 ORTHO05D000001 3.1e-11 72.8 163 38.7
Ah.15g092820 Amaranthus hybridus HOM05D000002 ORTHO05D000047 4.0e-11 72.4 156 32.1
QL04p010711 Quercus lobata HOM05D000002 ORTHO05D000047 9.0e-11 71.2 146 37.0
MD10G1196700 Malus domestica HOM05D000002 ORTHO05D000001 1.2e-10 70.9 104 44.2
AUR62017193 Chenopodium quinoa HOM05D000002 ORTHO05D000001 2.0e-10 70.1 159 30.2
Rhsim01G0079100 Rhododendron simsii HOM05D000002 ORTHO05D000047 2.0e-10 70.1 96 42.7
CANSAT21G0396 Cannabis sativa HOM05D000002 ORTHO05D000047 3.4e-10 69.3 158 36.1
Rhsim03G0165800 Rhododendron simsii HOM05D000002 ORTHO05D000001 3.4e-10 69.3 150 36.7
Ah.04g160330 Amaranthus hybridus HOM05D000002 ORTHO05D000001 4.5e-10 68.9 153 34.0
Rhsim04G0184200 Rhododendron simsii HOM05D000002 ORTHO05D000001 4.5e-10 68.9 150 34.7
Rhsim09G0112600 Rhododendron simsii HOM05D000002 ORTHO05D000047 4.5e-10 68.9 150 34.7
arahy.Tifrunner.gnm1.ann1.9G4WKJ Arachis hypogaea HOM05D000002 ORTHO05D000047 5.8e-10 68.6 149 33.6
AUR62038871 Chenopodium quinoa HOM05D000002 ORTHO05D000001 5.8e-10 68.6 157 33.8
Rhsim05G0166600 Rhododendron simsii HOM05D000002 ORTHO05D000047 9.9e-10 67.8 150 34.7
Rhsim10G0096300 Rhododendron simsii HOM05D000002 ORTHO05D000047 9.9e-10 67.8 150 34.7
Sopen04g009330 Solanum pennellii HOM05D000002 ORTHO05D000001 9.9e-10 67.8 180 32.2
arahy.Tifrunner.gnm1.ann1.17LFEQ Arachis hypogaea HOM05D000002 ORTHO05D000047 1.3e-09 67.4 152 31.6
Hma1.2p1_1103F.1_g257290 Hydrangea macrophylla HOM05D000002 ORTHO05D000047 1.3e-09 67.4 131 38.2
FvH4_6g02393 Fragaria vesca HOM05D000002 ORTHO05D000001 1.7e-09 67.0 150 33.3
Sopen02g016850 Solanum pennellii HOM05D000002 ORTHO05D000001 1.7e-09 67.0 175 31.4
AUR62023291 Chenopodium quinoa HOM05D000002 ORTHO05D000047 2.2e-09 66.6 159 28.9
Hma1.2p1_0337F.1_g129130 Hydrangea macrophylla HOM05D000002 ORTHO05D000047 2.2e-09 66.6 114 40.4
Hma1.2p1_1412F.1_g281790 Hydrangea macrophylla HOM05D000002 ORTHO05D000047 2.2e-09 66.6 114 39.5
Ah.07g205280 Amaranthus hybridus HOM05D000002 ORTHO05D000001 2.9e-09 66.2 167 31.7
Nn5g27051 Nelumbo nucifera HOM05D000002 ORTHO05D011017 2.9e-09 66.2 165 34.5
Aa31sc664G20 Aethionema arabicum HOM05D000002 ORTHO05D000001 3.8e-09 65.9 161 28.0
Rhsim04G0056500 Rhododendron simsii HOM05D000002 ORTHO05D000047 3.8e-09 65.9 104 41.3
TWI18G1421 Tripterygium wilfordii HOM05D000002 ORTHO05D000047 3.8e-09 65.9 156 31.4
VMungo0720G1725 Vigna mungo HOM05D001682 ORTHO05D001625 3.8e-09 65.9 149 32.2
Ah.09g236260 Amaranthus hybridus HOM05D000002 ORTHO05D000001 6.4e-09 65.1 157 32.5
Hma1.2p1_1448F.1_g284040 Hydrangea macrophylla HOM05D000002 ORTHO05D000047 6.4e-09 65.1 118 36.4
Ah.13g071380 Amaranthus hybridus HOM05D000002 ORTHO05D000001 8.4e-09 64.7 165 33.3
AUR62012689 Chenopodium quinoa HOM05D000002 ORTHO05D000001 8.4e-09 64.7 160 32.5
ECA240G1491 Erigeron canadensis HOM05D000002 ORTHO05D000001 8.4e-09 64.7 182 31.9
Hma1.2p1_0956F.1_g241250 Hydrangea macrophylla HOM05D000002 ORTHO05D000047 8.4e-09 64.7 118 37.3
Rhsim09G0147700 Rhododendron simsii HOM05D000002 ORTHO05D000047 8.4e-09 64.7 134 36.6
Sed0003227 Sechium edule HOM05D000002 ORTHO05D000047 8.4e-09 64.7 150 34.0
Atru.ctg802.2 Acer truncatum HOM05D000002 ORTHO05D000001 1.9e-08 63.5 154 33.1
Hma1.2p1_0945F.1_g240080 Hydrangea macrophylla HOM05D000002 ORTHO05D000047 1.9e-08 63.5 114 39.5
Solyc11g044235.1 Solanum lycopersicum HOM05D000002 ORTHO05D000001 1.9e-08 63.5 131 38.9
RcHm_v2.0_Chr5g0016831 Rosa chinensis HOM05D000002 ORTHO05D000001 2.4e-08 63.2 141 33.3
Atru.chr10.720 Acer truncatum HOM05D000002 ORTHO05D000001 3.2e-08 62.8 125 40.8
HanXRQChr07g0185431 Helianthus annuus HOM05D000002 ORTHO05D000047 3.2e-08 62.8 161 32.3
Ah.14g088300 Amaranthus hybridus HOM05D000002 ORTHO05D000001 4.2e-08 62.4 155 33.5
AUR62041906 Chenopodium quinoa HOM05D000002 ORTHO05D000047 4.2e-08 62.4 151 31.8
Potri.013G016350 Populus trichocarpa HOM05D000002 ORTHO05D000047 4.2e-08 62.4 148 29.7
TWI32G0898 Tripterygium wilfordii HOM05D000002 ORTHO05D000047 4.2e-08 62.4 148 29.1
AUR62009775 Chenopodium quinoa HOM05D000002 ORTHO05D000001 5.5e-08 62.0 148 31.8
HanXRQChr07g0200331 Helianthus annuus HOM05D000002 ORTHO05D000001 5.5e-08 62.0 156 29.5
Sopen00g008960 Solanum pennellii HOM05D000002 ORTHO05D000001 5.5e-08 62.0 175 32.0
Sopen02g024020 Solanum pennellii HOM05D000002 ORTHO05D000001 5.5e-08 62.0 175 32.0
Sopen02g030140 Solanum pennellii HOM05D000002 ORTHO05D000001 5.5e-08 62.0 175 32.0
Sopen04g006690 Solanum pennellii HOM05D000002 ORTHO05D000001 5.5e-08 62.0 175 32.0
TPR.G7457 Trifolium pratense HOM05D000002 ORTHO05D000001 5.5e-08 62.0 145 35.2
Aa31LG1G5750 Aethionema arabicum HOM05D000002 ORTHO05D000001 7.1e-08 61.6 163 29.4
AUR62041465 Chenopodium quinoa HOM05D000002 ORTHO05D000047 7.1e-08 61.6 163 30.1
Hma1.2p1_0819F.1_g223620 Hydrangea macrophylla HOM05D000002 ORTHO05D000047 7.1e-08 61.6 136 35.3
Rhsim01G0108500 Rhododendron simsii HOM05D000002 ORTHO05D000047 7.1e-08 61.6 157 33.1
HanXRQChr01g0018741 Helianthus annuus HOM05D000002 ORTHO05D000001 9.3e-08 61.2 170 30.6
MD04G1099000 Malus domestica HOM05D000002 ORTHO05D000001 9.3e-08 61.2 111 37.8
Rhsim02G0191000 Rhododendron simsii HOM05D000002 ORTHO05D000047 9.3e-08 61.2 157 33.1
Rhsim05G0175500 Rhododendron simsii HOM05D000244 ORTHO05D000047 9.3e-08 61.2 84 41.7
Rhsim11G0081200 Rhododendron simsii HOM05D000002 ORTHO05D000047 9.3e-08 61.2 97 42.3
Sopen02g015340 Solanum pennellii HOM05D000002 ORTHO05D000001 9.3e-08 61.2 183 29.0
Aa31sc20G200 Aethionema arabicum HOM05D000002 ORTHO05D000001 1.2e-07 60.8 169 28.4
Sopen04g024510 Solanum pennellii HOM05D000002 ORTHO05D000001 1.2e-07 60.8 142 36.6
HPP92_023007 Vanilla planifolia HOM05D000002 ORTHO05D000047 1.2e-07 60.8 153 31.4
ECA247G2977 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.6e-07 60.5 182 31.3
Ah.15g096060 Amaranthus hybridus HOM05D000002 ORTHO05D000047 2.1e-07 60.1 156 28.8
AUR62027544 Chenopodium quinoa HOM05D000002 ORTHO05D000047 2.1e-07 60.1 154 28.6
Psat7g120040 Pisum sativum HOM05D000002 ORTHO05D013003 2.1e-07 60.1 156 30.8
Sopen03g008890 Solanum pennellii HOM05D000002 ORTHO05D000001 2.1e-07 60.1 143 35.0
Sopen08g019500 Solanum pennellii HOM05D000002 ORTHO05D000001 2.1e-07 60.1 172 33.7
CSS0004984 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.7e-07 59.7 157 31.8
Hma1.2p1_0088F.1_g044990 Hydrangea macrophylla HOM05D000002 ORTHO05D000047 2.7e-07 59.7 145 33.1
Sabra14G0137200 Salix brachista HOM05D008143 ORTHO05D010256 2.7e-07 59.7 189 27.0
Sopen11g005050 Solanum pennellii HOM05D000002 ORTHO05D000001 2.7e-07 59.7 176 31.2
Atru.chr9.1414 Acer truncatum HOM05D000002 ORTHO05D000001 3.5e-07 59.3 161 29.2
Ah.11g048420 Amaranthus hybridus HOM05D000002 ORTHO05D000001 3.5e-07 59.3 176 33.0
HanXRQChr09g0243781 Helianthus annuus HOM05D000002 ORTHO05D000047 3.5e-07 59.3 158 31.6
Sopen04g023830 Solanum pennellii HOM05D000002 ORTHO05D000001 3.5e-07 59.3 142 35.2
Sopen10g020710 Solanum pennellii HOM05D000002 ORTHO05D000001 3.5e-07 59.3 168 31.0
Sopen12g012640 Solanum pennellii HOM05D000002 ORTHO05D000001 3.5e-07 59.3 168 31.0
THA.LOC104815417 Tarenaya hassleriana HOM05D000002 ORTHO05D000001 3.5e-07 59.3 177 31.1
THA.LOC104823102 Tarenaya hassleriana HOM05D000002 ORTHO05D000001 3.5e-07 59.3 177 31.1
HanXRQChr09g0276891 Helianthus annuus HOM05D000002 ORTHO05D000001 4.6e-07 58.9 158 29.7
AUR62017382 Chenopodium quinoa HOM05D000002 ORTHO05D000001 6.0e-07 58.5 158 29.7
AUR62021009 Chenopodium quinoa HOM05D000002 ORTHO05D000047 6.0e-07 58.5 151 29.1
ECA238G0769 Erigeron canadensis HOM05D000002 ORTHO05D000001 6.0e-07 58.5 162 29.6
ECA238G3232 Erigeron canadensis HOM05D000002 ORTHO05D000001 6.0e-07 58.5 164 31.7
Sopen01g037740 Solanum pennellii HOM05D000002 ORTHO05D000001 6.0e-07 58.5 168 31.0
Sopen02g013970 Solanum pennellii HOM05D000002 ORTHO05D000001 6.0e-07 58.5 175 31.4
AUR62029213 Chenopodium quinoa HOM05D000002 ORTHO05D000047 7.9e-07 58.2 158 32.9
FvH4_3g38851 Fragaria vesca HOM05D000002 ORTHO05D000001 7.9e-07 58.2 103 39.8
HanXRQChr03g0081661 Helianthus annuus HOM05D000002 ORTHO05D000047 7.9e-07 58.2 167 31.7
Manes.14G103250 Manihot esculenta HOM05D000002 ORTHO05D000001 7.9e-07 58.2 191 25.7
HPP92_020095 Vanilla planifolia HOM05D000002 ORTHO05D000001 7.9e-07 58.2 118 32.2
Ah.12g058440 Amaranthus hybridus HOM05D000002 ORTHO05D000001 1.0e-06 57.8 155 32.3
ECA232G2544 Erigeron canadensis HOM05D004674 ORTHO05D000001 1.0e-06 57.8 187 27.8
Manes.10G064332 Manihot esculenta HOM05D000002 ORTHO05D013003 1.0e-06 57.8 166 31.9
Sabra05G0166200 Salix brachista HOM05D000002 ORTHO05D000047 1.0e-06 57.8 140 30.7
Sabra05G0166300 Salix brachista HOM05D000002 ORTHO05D000047 1.0e-06 57.8 140 30.7
Sopen04g024920 Solanum pennellii HOM05D000002 ORTHO05D000001 1.0e-06 57.8 174 28.7
Sopen08g019300 Solanum pennellii HOM05D000002 ORTHO05D000001 1.0e-06 57.8 154 27.9
Sopen09g008000 Solanum pennellii HOM05D000002 ORTHO05D000001 1.0e-06 57.8 178 30.3
AUR62008378 Chenopodium quinoa HOM05D000610 ORTHO05D001284 1.3e-06 57.4 149 34.9
AUR62040109 Chenopodium quinoa HOM05D000002 ORTHO05D000001 1.3e-06 57.4 155 31.6
ECA233G0052 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.3e-06 57.4 122 37.7
Sopen04g024750 Solanum pennellii HOM05D000002 ORTHO05D000001 1.3e-06 57.4 143 34.3
Sopen06g016020 Solanum pennellii HOM05D000002 ORTHO05D000001 1.3e-06 57.4 153 30.1
Sopen06g030850 Solanum pennellii HOM05D000002 ORTHO05D000001 1.3e-06 57.4 143 34.3
Sopen07g020070 Solanum pennellii HOM05D000002 ORTHO05D000001 1.3e-06 57.4 172 30.2
Sopen09g003850 Solanum pennellii HOM05D000002 ORTHO05D000001 1.3e-06 57.4 142 35.2
CSS0004866 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000047 1.8e-06 57.0 152 29.6
CSS0017511 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000047 1.8e-06 57.0 152 29.6
CSS0050398 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000047 1.8e-06 57.0 152 29.6
AUR62017298 Chenopodium quinoa HOM05D000002 ORTHO05D000047 1.8e-06 57.0 167 33.5
Sopen10g021240 Solanum pennellii HOM05D000002 ORTHO05D000001 1.8e-06 57.0 168 30.4
Ah.15g098910 Amaranthus hybridus HOM05D000002 ORTHO05D000001 2.3e-06 56.6 151 30.5
CSS0011005 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000047 2.3e-06 56.6 152 29.6
CSS0032452 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000047 2.3e-06 56.6 152 29.6
CSS0038278 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000047 2.3e-06 56.6 152 29.6
CSS0041031 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000047 2.3e-06 56.6 152 29.6
CSS0048989 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000047 2.3e-06 56.6 152 29.6
AUR62008360 Chenopodium quinoa HOM05D000002 ORTHO05D000047 2.3e-06 56.6 166 25.3
Manes.18G130533 Manihot esculenta HOM05D000002 ORTHO05D000047 2.3e-06 56.6 191 26.2
PSO675G4835 Papaver somniferum HOM05D000002 ORTHO05D000001 2.3e-06 56.6 148 34.5
Sopen02g013170 Solanum pennellii HOM05D000002 ORTHO05D000001 2.3e-06 56.6 160 28.8
Sopen03g025810 Solanum pennellii HOM05D000002 ORTHO05D000001 2.3e-06 56.6 163 29.4
Ah.03g134480 Amaranthus hybridus HOM05D000002 ORTHO05D000001 3.0e-06 56.2 162 32.1
Ah.05g176120 Amaranthus hybridus HOM05D000002 ORTHO05D000001 3.0e-06 56.2 153 30.7
arahy.Tifrunner.gnm1.ann1.JD7LGJ Arachis hypogaea HOM05D010226 ORTHO05D011017 3.0e-06 56.2 164 31.1
CSS0010794 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.0e-06 56.2 152 29.6
ECA232G1027 Erigeron canadensis HOM05D000002 ORTHO05D000001 3.0e-06 56.2 200 29.5
RhsimUnG0026700 Rhododendron simsii HOM05D000002 ORTHO05D013648 3.0e-06 56.2 183 28.4
Sopen09g029790 Solanum pennellii HOM05D000002 ORTHO05D000001 3.0e-06 56.2 175 29.7
THA.LOC104804180 Tarenaya hassleriana HOM05D000002 ORTHO05D000001 3.0e-06 56.2 179 29.6
CSS0029482 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.9e-06 55.8 157 28.0
Hma1.2p1_0182F.1_g080480 Hydrangea macrophylla HOM05D000002 ORTHO05D000047 3.9e-06 55.8 98 37.8
Hma1.2p1_2308F.1_g319490 Hydrangea macrophylla HOM05D000002 ORTHO05D000047 3.9e-06 55.8 132 32.6
Nn5g29126 Nelumbo nucifera HOM05D000002 ORTHO05D000001 3.9e-06 55.8 68 41.2
Rhsim03G0137800 Rhododendron simsii HOM05D001360 ORTHO05D001231 3.9e-06 55.8 68 45.6
AUR62008605 Chenopodium quinoa HOM05D000002 ORTHO05D000047 5.1e-06 55.5 162 30.2
HanXRQChr11g0353391 Helianthus annuus HOM05D000002 ORTHO05D000047 5.1e-06 55.5 160 31.9
Hma1.2p1_1936F.1_g308230 Hydrangea macrophylla HOM05D000002 ORTHO05D000047 5.1e-06 55.5 156 31.4
Nn1g06236 Nelumbo nucifera HOM05D000002 ORTHO05D000047 5.1e-06 55.5 165 27.9
Sopen03g032880 Solanum pennellii HOM05D000002 ORTHO05D000001 5.1e-06 55.5 154 28.6
Ah.01g006250 Amaranthus hybridus HOM05D000002 ORTHO05D000001 6.7e-06 55.1 156 30.8
CSS0017883 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 6.7e-06 55.1 152 29.6
Rhsim02G0167500 Rhododendron simsii HOM05D000002 ORTHO05D000047 6.7e-06 55.1 74 41.9
arahy.Tifrunner.gnm1.ann1.BC0AQ3 Arachis hypogaea HOM05D010226 ORTHO05D011017 8.7e-06 54.7 182 29.1
CAN.G27.28 Capsicum annuum HOM05D005075 ORTHO05D007097 8.7e-06 54.7 66 48.5
ECA238G3226 Erigeron canadensis HOM05D000296 ORTHO05D000001 8.7e-06 54.7 122 36.9
QL11p017983 Quercus lobata HOM05D000002 ORTHO05D000047 8.7e-06 54.7 157 30.6
Sabra16G0136200 Salix brachista HOM05D000002 ORTHO05D000047 8.7e-06 54.7 127 30.7
SHI01914 Sapria himalayana HOM05D000002 ORTHO05D000047 8.7e-06 54.7 154 29.9
Sopen05g008960 Solanum pennellii HOM05D000002 ORTHO05D000001 8.7e-06 54.7 154 28.6
TPR.G835 Trifolium pratense HOM05D000002 ORTHO05D000047 8.7e-06 54.7 155 29.7


User provided reference genes

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