Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr1.2931 Acer truncatum HOM05D002009 ORTHO05D006831 4.0e-240 834.3 412 100.0
Atru.chr2.372 Acer truncatum HOM05D002009 ORTHO05D006831 1.5e-58 231.1 132 87.1
QL03p007353 Quercus lobata HOM05D002009 ORTHO05D006831 1.2e-42 178.3 131 67.2
QL03p007751 Quercus lobata HOM05D002009 ORTHO05D006831 1.3e-41 174.9 131 66.4
RcHm_v2.0_Chr3g0455131 Rosa chinensis HOM05D002009 ORTHO05D006831 1.7e-41 174.5 131 66.4
CiPaw.07G018700 Carya illinoinensis HOM05D002009 ORTHO05D006831 2.9e-41 173.7 141 61.0
Potri.013G022200 Populus trichocarpa HOM05D002009 ORTHO05D006831 1.4e-40 171.4 141 62.4
FvH4_6g06120 Fragaria vesca HOM05D002009 ORTHO05D006831 7.2e-40 169.1 131 64.1
FAN14G2713 Fragaria x ananassa HOM05D002009 ORTHO05D006831 7.2e-40 169.1 131 64.1
MD12G1217900 Malus domestica HOM05D002009 ORTHO05D006831 7.2e-40 169.1 133 62.4
Prupe.6G324000 Prunus persica HOM05D002009 ORTHO05D006831 7.2e-40 169.1 131 63.4
FAN02G0878 Fragaria x ananassa HOM05D002009 ORTHO05D006831 2.1e-39 167.5 131 62.6
Sabra13G0024400 Salix brachista HOM05D002009 ORTHO05D006831 7.9e-39 165.6 141 60.3
Haze_04184 Corylus avellana HOM05D002009 ORTHO05D006831 1.8e-38 164.5 131 63.4
Gohir.D08G227001 Gossypium hirsutum HOM05D002009 ORTHO05D006831 2.3e-38 164.1 129 62.8
Gohir.A08G210100 Gossypium hirsutum HOM05D002009 ORTHO05D006831 6.7e-38 162.5 142 59.2
Ca_05812_v3 Cicer arietinum L. HOM05D002009 ORTHO05D006831 1.1e-37 161.8 129 62.8
Dinv40301 Davidia involucrata HOM05D002009 ORTHO05D006831 1.1e-37 161.8 124 61.3
FAN09G2733 Fragaria x ananassa HOM05D002009 ORTHO05D006831 2.0e-37 161.0 121 65.3
Manes.09G167800 Manihot esculenta HOM05D002009 ORTHO05D006831 4.3e-37 159.8 142 57.7
Gorai.004G241000 Gossypium raimondii HOM05D002009 ORTHO05D006831 5.7e-37 159.5 129 61.2
Thecc.05G301300 Theobroma cacao HOM05D002009 ORTHO05D006831 1.3e-36 158.3 129 62.0
Sopen01g042770 Solanum pennellii HOM05D002009 ORTHO05D006831 4.8e-36 156.4 131 59.5
COL.COLO4_13444 Corchorus olitorius HOM05D002009 ORTHO05D006831 6.3e-36 156.0 125 62.4
Lj1g0026508 Lotus japonicus HOM05D002009 ORTHO05D006831 6.3e-36 156.0 132 55.3
Glyma.03G237200 Glycine max HOM05D002009 ORTHO05D006831 1.1e-35 155.2 138 57.2
TPR.G33207 Trifolium pratense HOM05D002009 ORTHO05D006831 1.1e-35 155.2 132 58.3
TWI36G1702 Tripterygium wilfordii HOM05D002009 ORTHO05D006831 1.1e-35 155.2 142 57.7
CAN.G1034.31 Capsicum annuum HOM05D002009 ORTHO05D006831 2.4e-35 154.1 131 58.8
Hma1.2p1_1077F.1_g254700 Hydrangea macrophylla HOM05D002009 ORTHO05D006831 2.4e-35 154.1 124 60.5
Psat0s2197g0080 Pisum sativum HOM05D002009 ORTHO05D006831 2.4e-35 154.1 148 52.0
Peaxi162Scf00037g00637 Petunia axillaris HOM05D002009 ORTHO05D006831 3.1e-35 153.7 131 58.0
Solyc01g099220.3 Solanum lycopersicum HOM05D002009 ORTHO05D006831 3.1e-35 153.7 131 58.8
TAR633G0909 Trochodendron aralioides HOM05D002009 ORTHO05D006831 5.3e-35 152.9 131 59.5
Medtr7g113380 Medicago truncatula HOM05D002009 ORTHO05D006831 9.1e-35 152.1 132 57.6
Cc02_g33310 Coffea canephora HOM05D002009 ORTHO05D006831 1.5e-34 151.4 129 53.5
Phvul.006G091300 Phaseolus vulgaris HOM05D002009 ORTHO05D006831 2.0e-34 151.0 138 54.3
arahy.Tifrunner.gnm1.ann1.UY60S3 Arachis hypogaea HOM05D002009 ORTHO05D006831 4.5e-34 149.8 136 56.6
CANSAT54G3017 Cannabis sativa HOM05D002009 ORTHO05D006831 4.5e-34 149.8 130 56.2
Sc09g0003130 Simmondsia chinensis HOM05D002009 ORTHO05D006831 5.9e-34 149.4 126 57.1
VMungo0540G0763 Vigna mungo HOM05D002009 ORTHO05D006831 5.9e-34 149.4 138 54.3
Lj9C89G5 Lonicera japonica HOM05D002009 ORTHO05D006831 7.7e-34 149.1 129 55.0
Lju1040C0G1 Lonicera japonica HOM05D002009 ORTHO05D006831 1.0e-33 148.7 129 55.0
arahy.Tifrunner.gnm1.ann1.V7WSHY Arachis hypogaea HOM05D002009 ORTHO05D006831 1.3e-33 148.3 136 55.9
vmacro04830 Vaccinium macrocarpon HOM05D002009 ORTHO05D006831 1.3e-33 148.3 142 53.5
vmacro04986 Vaccinium macrocarpon HOM05D002009 ORTHO05D006831 1.3e-33 148.3 142 53.5
Cpa.g.sc48.68 Carica papaya HOM05D002009 ORTHO05D006831 1.7e-33 147.9 127 58.3
CSS0012384 Camellia sinensis var. sinensis HOM05D002009 ORTHO05D006831 2.9e-33 147.1 129 55.8
CSS0006817 Camellia sinensis var. sinensis HOM05D002009 ORTHO05D006831 3.8e-33 146.7 129 55.8
Rhsim12G0060600 Rhododendron simsii HOM05D002009 ORTHO05D006831 5.0e-33 146.4 129 57.4
Ciclev10003639m.g Citrus clementina HOM05D002009 ORTHO05D006831 6.5e-33 146.0 131 59.5
MSTRG.27991 Avicennia marina HOM05D002009 ORTHO05D006831 1.1e-32 145.2 138 49.3
Eucgr.B01945 Eucalyptus grandis HOM05D002009 ORTHO05D006831 1.1e-32 145.2 124 56.5
DCAR_001814 Daucus carota HOM05D002009 ORTHO05D006831 4.2e-32 143.3 124 56.5
Lju1225A1G38 Lonicera japonica HOM05D002009 ORTHO05D016985 4.2e-32 143.3 127 54.3
Actinidia23644 Actinidia chinensis HOM05D002009 ORTHO05D006831 7.2e-32 142.5 125 54.4
AUR62005157 Chenopodium quinoa HOM05D002009 ORTHO05D006831 7.2e-32 142.5 136 48.5
Migut.N02070 Erythranthe guttata HOM05D002009 ORTHO05D006831 7.2e-32 142.5 141 46.1
Rhsim07G0183900 Rhododendron simsii HOM05D002009 ORTHO05D006831 9.4e-32 142.1 139 55.4
Lalb_Chr18g0045671 Lupinus albus HOM05D002009 ORTHO05D006831 2.1e-31 141.0 132 53.8
Hund07076 Selenicereus undatus HOM05D002009 ORTHO05D006831 2.7e-31 140.6 124 55.6
Thhalv10017996m.g Eutrema salsugineum HOM05D002009 ORTHO05D006831 7.9e-31 139.0 138 50.7
EL10Ac4g09369 Beta vulgaris HOM05D002009 ORTHO05D006831 1.0e-30 138.7 124 51.6
Carub.0002s1383 Capsella rubella HOM05D002009 ORTHO05D006831 1.8e-30 137.9 129 52.7
Migut.N02062 Erythranthe guttata HOM05D002009 ORTHO05D006831 1.8e-30 137.9 141 46.1
PSO210G3028 Papaver somniferum HOM05D002009 ORTHO05D006831 3.9e-30 136.7 122 51.6
Aa31LG2G11690 Aethionema arabicum HOM05D000208 ORTHO05D006831 5.2e-30 136.3 138 50.0
AL2G26100 Arabidopsis lyrata HOM05D002009 ORTHO05D006831 6.7e-30 136.0 138 50.7
AT1G67500 Arabidopsis thaliana HOM05D002009 ORTHO05D006831 6.7e-30 136.0 129 51.9
CARHR060080 Cardamine hirsuta HOM05D002009 ORTHO05D006831 1.1e-29 135.2 129 52.7
C06p38660 Brassica napus HOM05D002009 ORTHO05D006831 2.0e-29 134.4 129 53.5
BolC6t38955H Brassica oleracea HOM05D002009 ORTHO05D006831 2.0e-29 134.4 129 53.5
THA.LOC104823729 Tarenaya hassleriana HOM05D002009 ORTHO05D006831 2.0e-29 134.4 122 54.9
A07p32520 Brassica napus HOM05D002009 ORTHO05D006831 3.3e-29 133.7 129 52.7
BcaB03g15362 Brassica carinata HOM05D002009 ORTHO05D006831 4.4e-29 133.3 129 51.9
Nn3g21358 Nelumbo nucifera HOM05D002009 ORTHO05D006831 5.7e-29 132.9 138 51.4
Aqoxy2G03070 Aquilegia oxysepala HOM05D002009 ORTHO05D006831 7.4e-29 132.5 127 54.3
BraA07t30876Z Brassica rapa HOM05D002009 ORTHO05D006831 9.7e-29 132.1 129 51.9
PSO170G1195 Papaver somniferum HOM05D002009 ORTHO05D006831 1.7e-28 131.3 122 50.0
AUR62000811 Chenopodium quinoa HOM05D002009 ORTHO05D006831 2.2e-28 131.0 122 48.4
ECA236G3568 Erigeron canadensis HOM05D002009 ORTHO05D006831 2.2e-28 131.0 137 44.5
Lsat_1_v5_gn_9_86800 Lactuca sativa HOM05D002009 ORTHO05D006831 2.8e-28 130.6 116 54.3
GSVIVG01000087001 Vitis vinifera HOM05D002009 ORTHO05D006831 2.8e-28 130.6 113 57.5
HanXRQChr15g0469941 Helianthus annuus HOM05D002009 ORTHO05D006831 4.8e-28 129.8 135 47.4
Sp5g22500 Schrenkiella parvula HOM05D002009 ORTHO05D006831 4.8e-28 129.8 149 48.3
Ah.04g160310 Amaranthus hybridus HOM05D002009 ORTHO05D006831 4.1e-27 126.7 132 44.7
Oeu002661.1 Olea europaea HOM05D002009 ORTHO05D006831 5.3e-27 126.3 150 45.3
SGA_v2.0_scaffold80G25788 Striga asiatica HOM05D002009 ORTHO05D006831 5.3e-27 126.3 136 46.3
ClCG02G015610 Citrullus lanatus HOM05D002009 ORTHO05D006831 9.1e-27 125.6 125 52.0
MELO3C004237.2 Cucumis melo HOM05D002009 ORTHO05D006831 2.6e-26 124.0 132 50.0
CsaV3_2G006490 Cucumis sativus L. HOM05D002009 ORTHO05D006831 7.7e-26 122.5 132 48.5
QL03p054350 Quercus lobata HOM05D003219 ORTHO05D005190 1.3e-25 121.7 125 52.0
Sed0001711 Sechium edule HOM05D002009 ORTHO05D006831 2.9e-25 120.6 132 48.5
SEGI_14509 Sequoiadendron giganteum HOM05D002009 ORTHO05D006831 8.5e-25 119.0 128 46.1
Zm00001eb330170 Zea mays HOM05D002009 ORTHO05D006831 8.5e-25 119.0 123 48.8
Lj9C88G10 Lonicera japonica HOM05D002009 ORTHO05D006831 1.2e-23 115.2 102 53.9
unitig_0.g2310 Utricularia gibba HOM05D002009 ORTHO05D006831 8.0e-23 112.5 125 44.0
MD05G1053600 Malus domestica HOM05D002009 ORTHO05D016985 4.0e-22 110.2 88 59.1
Sopen01g042760 Solanum pennellii HOM05D000208 ORTHO05D000130 5.2e-22 109.8 64 73.4
Cpa.g.sc48.67 Carica papaya HOM05D002009 ORTHO05D006831 8.8e-22 109.0 83 65.1
SHI18133 Sapria himalayana HOM05D002009 ORTHO05D006831 8.8e-22 109.0 190 38.4
ATR0706G256 Amborella trichopoda HOM05D002009 ORTHO05D006831 1.3e-20 105.1 138 44.2
Dinv35242 Davidia involucrata HOM05D006627 ORTHO05D007753 1.7e-20 104.8 59 76.3
HPP92_001324 Vanilla planifolia HOM05D002009 ORTHO05D006831 1.4e-19 101.7 128 43.8
Os07g0669000 Oryza sativa ssp. japonica HOM05D002009 ORTHO05D006831 4.1e-19 100.1 58 70.7
Atru.chr2.240 Acer truncatum HOM05D000621 ORTHO05D000421 1.1e-16 92.0 160 39.4
AagrBONN_evm.TU.Sc2ySwM_362.1967 Anthoceros agrestis HOM05D002009 ORTHO05D006831 1.9e-16 91.3 80 47.5
Pp3c2_33440 Physcomitrium patens HOM05D002009 ORTHO05D006831 1.9e-16 91.3 129 37.2
Mapoly0082s0049 Marchantia polymorpha HOM05D002009 ORTHO05D006831 2.5e-16 90.9 82 45.1
Cre09.g387400 Chlamydomonas reinhardtii HOM05D002009 ORTHO05D006831 9.4e-16 89.0 55 63.6
FAN05G0625 Fragaria x ananassa HOM05D002009 ORTHO05D006831 6.1e-15 86.3 151 35.8
SMO146G0384 Selaginella moellendorffii HOM05D002009 ORTHO05D006831 1.0e-14 85.5 115 40.0
CBR_g26314 Chara braunii HOM05D002009 ORTHO05D006831 1.2e-13 82.0 65 50.8
Sabra15G0077100 Salix brachista HOM05D002009 ORTHO05D006831 4.4e-13 80.1 92 46.7
MD05G1053400 Malus domestica HOM05D002009 ORTHO05D006831 5.7e-13 79.7 151 32.5
EL10Ac4g09368 Beta vulgaris HOM05D002009 ORTHO05D006831 9.8e-13 79.0 98 42.9
Rhsim06G0107400 Rhododendron simsii HOM05D002009 ORTHO05D006831 3.8e-09 67.0 95 42.1
MD05G1054000 Malus domestica HOM05D002009 ORTHO05D006831 6.5e-09 66.2 44 68.2
Psat0s2197g0160 Pisum sativum HOM05D002009 ORTHO05D006831 3.2e-08 63.9 44 70.5
Cpa.g.sc48.181 Carica papaya HOM05D000621 ORTHO05D000421 1.4e-06 58.5 42 69.0
Aqoxy2G03049 Aquilegia oxysepala HOM05D002009 ORTHO05D006831 1.8e-06 58.2 44 63.6
Aa31LG1G5800 Aethionema arabicum HOM05D000621 ORTHO05D000421 3.0e-06 57.4 57 52.6
Sabra11G0104600 Salix brachista HOM05D000080 ORTHO05D004954 4.0e-06 57.0 29 82.8
Sabra05G0106300 Salix brachista HOM05D000002 ORTHO05D000001 6.8e-06 56.2 26 88.5


User provided reference genes

Program Settings