Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr1.1954 Acer truncatum HOM05D004769 ORTHO05D005605 3.2e-197 691.8 418 100.0
Thecc.04G060900 Theobroma cacao HOM05D004769 ORTHO05D005605 1.4e-152 543.5 448 78.1
Cpa.g.sc178.7 Carica papaya HOM05D004769 ORTHO05D005605 2.4e-152 542.7 456 77.4
CiPaw.03G077600 Carya illinoinensis HOM05D004769 ORTHO05D005605 1.9e-149 533.1 446 77.8
Potri.004G075700 Populus trichocarpa HOM05D004769 ORTHO05D005605 4.0e-147 525.4 433 76.2
Cfa007768 Carpinus fangiana HOM05D004769 ORTHO05D005605 2.6e-146 522.7 442 76.7
TAR375G0174 Trochodendron aralioides HOM05D004769 ORTHO05D005605 7.5e-146 521.2 416 71.9
Dinv19070 Davidia involucrata HOM05D004769 ORTHO05D005605 9.8e-146 520.8 428 75.5
Haze_14305 Corylus avellana HOM05D004769 ORTHO05D005605 1.7e-145 520.0 438 77.9
Hma1.2p1_0158F.1_g069800 Hydrangea macrophylla HOM05D004769 ORTHO05D005605 4.9e-145 518.5 419 73.0
Lalb_Chr17g0345901 Lupinus albus HOM05D004769 ORTHO05D005605 1.4e-144 516.9 443 76.5
Prupe.1G069400 Prunus persica HOM05D004769 ORTHO05D005605 1.4e-144 516.9 440 73.9
TWI74G1557 Tripterygium wilfordii HOM05D004769 ORTHO05D005605 3.2e-144 515.8 428 75.5
GSVIVG01026312001 Vitis vinifera HOM05D004769 ORTHO05D005605 3.2e-144 515.8 418 76.8
Sc11g0004750 Simmondsia chinensis HOM05D004769 ORTHO05D005605 4.1e-144 515.4 422 80.1
PGR042G1215 Punica granatum HOM05D004769 ORTHO05D005605 7.1e-144 514.6 428 78.5
Sabra04G0050400 Salix brachista HOM05D004769 ORTHO05D005605 1.6e-143 513.5 444 72.5
Potri.017G144121 Populus trichocarpa HOM05D004769 ORTHO05D005605 6.0e-143 511.5 438 76.0
Actinidia35715 Actinidia chinensis HOM05D004769 ORTHO05D005605 1.3e-142 510.4 417 76.7
Ca_05772_v3 Cicer arietinum L. HOM05D004769 ORTHO05D005605 3.9e-142 508.8 418 66.7
CANSAT78G2338 Cannabis sativa HOM05D004769 ORTHO05D005605 6.6e-142 508.1 448 76.1
RcHm_v2.0_Chr4g0398571 Rosa chinensis HOM05D004769 ORTHO05D005605 9.5e-141 504.2 422 74.6
TWI77G0470 Tripterygium wilfordii HOM05D004769 ORTHO05D005605 9.5e-141 504.2 431 77.5
Medtr5g077180 Medicago truncatula HOM05D004769 ORTHO05D005605 1.2e-140 503.8 439 74.0
TPR.G9995 Trifolium pratense HOM05D004769 ORTHO05D005605 2.1e-140 503.1 438 75.3
Cc07_g12960 Coffea canephora HOM05D004769 ORTHO05D005605 3.6e-140 502.3 418 74.4
Glyma.14G211600 Glycine max HOM05D004769 ORTHO05D005605 8.1e-140 501.1 446 75.8
FvH4_4g06670 Fragaria vesca HOM05D004769 ORTHO05D005605 1.1e-139 500.7 422 74.4
VMungo0647G0921 Vigna mungo HOM05D004769 ORTHO05D005605 1.4e-139 500.4 446 74.4
MBI04_g35346_MAGBIO Magnolia biondii HOM05D004769 ORTHO05D005605 1.8e-139 500.0 431 77.5
Phvul.008G239200 Phaseolus vulgaris HOM05D004769 ORTHO05D005605 2.0e-138 496.5 440 76.4
QL02p060102 Quercus lobata HOM05D004769 ORTHO05D005605 2.6e-138 496.1 525 66.9
MD16G1242400 Malus domestica HOM05D004769 ORTHO05D005605 3.4e-138 495.7 415 78.6
MD13G1237000 Malus domestica HOM05D004769 ORTHO05D005605 1.3e-137 493.8 421 73.2
Gorai.004G064700 Gossypium raimondii HOM05D004769 ORTHO05D005605 6.4e-137 491.5 424 77.8
Gohir.D08G062500 Gossypium hirsutum HOM05D004769 ORTHO05D005605 8.4e-137 491.1 425 77.6
PSO017G5633 Papaver somniferum HOM05D004769 ORTHO05D005605 8.4e-137 491.1 448 70.3
Glyma.02G241900 Glycine max HOM05D004769 ORTHO05D005605 4.1e-136 488.8 479 69.1
Aqoxy5G00268 Aquilegia oxysepala HOM05D004769 ORTHO05D005605 5.4e-136 488.4 416 70.9
Lsat_1_v5_gn_8_18601 Lactuca sativa HOM05D004769 ORTHO05D005605 9.2e-136 487.6 412 73.8
Gohir.A08G052900 Gossypium hirsutum HOM05D004769 ORTHO05D005605 1.6e-135 486.9 430 76.3
Hma1.2p1_0034F.1_g021310 Hydrangea macrophylla HOM05D004769 ORTHO05D005605 2.7e-135 486.1 394 80.5
ClCG01G008650 Citrullus lanatus HOM05D004769 ORTHO05D005605 6.0e-135 485.0 443 70.2
EL10Ac6g13916 Beta vulgaris HOM05D004769 ORTHO05D005605 1.7e-134 483.4 456 67.5
ECA233G3826 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.3e-134 483.0 398 73.6
Sed0006929 Sechium edule HOM05D004769 ORTHO05D005605 2.3e-134 483.0 447 71.6
Lj4A255T24 Lonicera japonica HOM05D004769 ORTHO05D005605 3.9e-134 482.3 409 72.9
FAN07G0829 Fragaria x ananassa HOM05D004769 ORTHO05D005605 1.1e-133 480.7 414 72.0
FAN12G3741 Fragaria x ananassa HOM05D004769 ORTHO05D005605 3.3e-133 479.2 416 73.3
FAN22G0974 Fragaria x ananassa HOM05D004769 ORTHO05D005605 5.6e-133 478.4 416 72.8
COL.COLO4_05842 Corchorus olitorius HOM05D004769 ORTHO05D005605 1.2e-132 477.2 416 63.2
HanXRQChr08g0218471 Helianthus annuus HOM05D004769 ORTHO05D005605 6.2e-132 474.9 414 75.6
FAN17G2568 Fragaria x ananassa HOM05D004769 ORTHO05D005605 1.4e-131 473.8 416 71.4
THA.LOC104823824 Tarenaya hassleriana HOM05D004769 ORTHO05D005605 2.0e-130 469.9 420 74.5
HPP92_017811 Vanilla planifolia HOM05D004769 ORTHO05D005605 2.6e-130 469.5 417 69.8
CSS0001926 Camellia sinensis var. sinensis HOM05D004769 ORTHO05D005605 1.7e-129 466.8 267 85.0
CsaV3_5G020660 Cucumis sativus L. HOM05D004769 ORTHO05D005605 1.7e-129 466.8 445 68.8
ATR0083G043 Amborella trichopoda HOM05D004769 ORTHO05D005605 4.9e-129 465.3 421 74.6
TAR374G1377 Trochodendron aralioides HOM05D004769 ORTHO05D005605 4.9e-129 465.3 423 66.9
arahy.Tifrunner.gnm1.ann1.SAK0JK Arachis hypogaea HOM05D004769 ORTHO05D005605 1.1e-128 464.2 474 68.8
MELO3C025080.2 Cucumis melo HOM05D004769 ORTHO05D005605 1.4e-128 463.8 495 62.2
Nn1g02020 Nelumbo nucifera HOM05D004769 ORTHO05D005605 1.6e-127 460.3 429 69.9
Lalb_Chr04g0251441 Lupinus albus HOM05D004769 ORTHO05D005605 2.7e-127 459.5 432 72.9
AUR62017457 Chenopodium quinoa HOM05D004769 ORTHO05D005605 1.3e-126 457.2 414 61.6
MSTRG.3686 Avicennia marina HOM05D004769 ORTHO05D005605 1.7e-126 456.8 432 72.5
Nitab4.5_0000574g0160 Nicotiana tabacum HOM05D004769 ORTHO05D005605 6.6e-126 454.9 439 69.5
Rhsim10G0183300 Rhododendron simsii HOM05D004769 ORTHO05D005605 5.6e-125 451.8 417 73.9
CAN.G525.4 Capsicum annuum HOM05D004769 ORTHO05D005605 1.6e-124 450.3 437 68.2
Peaxi162Scf00442g00627 Petunia axillaris HOM05D004769 ORTHO05D005605 1.6e-124 450.3 429 70.4
Sopen04g006720 Solanum pennellii HOM05D004769 ORTHO05D005605 2.1e-124 449.9 436 69.5
PGSC0003DMG400023617 Solanum tuberosum HOM05D004769 ORTHO05D005605 2.8e-124 449.5 433 70.2
Migut.H02243 Erythranthe guttata HOM05D004769 ORTHO05D005605 3.6e-124 449.1 419 70.9
Solyc04g014560.4 Solanum lycopersicum HOM05D004769 ORTHO05D005605 4.8e-124 448.7 447 68.5
AUR62032521 Chenopodium quinoa HOM05D004769 ORTHO05D005605 2.4e-123 446.4 399 58.6
Lj2C513G15 Lonicera japonica HOM05D004769 ORTHO05D005605 4.0e-123 445.7 410 59.0
Ah.02g128700 Amaranthus hybridus HOM05D004769 ORTHO05D005605 6.9e-123 444.9 512 60.4
DCAR_028435 Daucus carota HOM05D004769 ORTHO05D005605 1.2e-122 444.1 260 83.1
Sp7g05100 Schrenkiella parvula HOM05D004769 ORTHO05D005605 2.2e-121 439.9 420 61.0
SHI30114 Sapria himalayana HOM05D002544 ORTHO05D007856 4.9e-121 438.7 405 67.2
AL7G46000 Arabidopsis lyrata HOM05D004769 ORTHO05D005605 8.4e-121 438.0 419 70.6
Thhalv10027788m.g Eutrema salsugineum HOM05D004769 ORTHO05D005605 1.1e-120 437.6 419 70.6
Oeu032315.1 Olea europaea HOM05D004769 ORTHO05D005605 2.4e-120 436.4 490 60.2
Oeu029083.1 Olea europaea HOM05D004769 ORTHO05D005605 1.2e-119 434.1 494 61.7
Os05g0178900 Oryza sativa ssp. japonica HOM05D004769 ORTHO05D005605 1.2e-119 434.1 437 65.7
vmacro20487 Vaccinium macrocarpon HOM05D004769 ORTHO05D005605 1.6e-119 433.7 416 72.4
BolC4t25993H Brassica oleracea HOM05D004769 ORTHO05D005605 3.9e-118 429.1 419 64.2
C04p44180 Brassica napus HOM05D004769 ORTHO05D005605 1.3e-116 424.1 419 64.4
SGA_v2.0_scaffold45G17131 Striga asiatica HOM05D004769 ORTHO05D005605 1.1e-115 421.0 418 65.8
Carub.0007s3249 Capsella rubella HOM05D004769 ORTHO05D005605 1.8e-115 420.2 439 65.4
Zm00001eb377290 Zea mays HOM05D004769 ORTHO05D005605 3.1e-115 419.5 417 56.4
SGA_v2.0_scaffold115G32089 Striga asiatica HOM05D004769 ORTHO05D005605 5.8e-114 415.2 418 68.7
A04p10540 Brassica napus HOM05D004769 ORTHO05D005605 2.2e-113 413.3 422 65.4
LjContig00141g0012428 Lotus japonicus HOM05D004769 ORTHO05D005605 2.2e-113 413.3 465 54.2
BcaC02g09560 Brassica carinata HOM05D004769 ORTHO05D005605 3.8e-113 412.5 419 62.8
unitig_748.g7024 Utricularia gibba HOM05D004769 ORTHO05D005605 4.9e-113 412.1 246 80.9
MapolyY_B0025 Marchantia polymorpha HOM05D004769 ORTHO05D005605 9.3e-112 407.9 266 75.2
BraA04t16720Z Brassica rapa HOM05D004769 ORTHO05D005605 4.6e-111 405.6 420 66.2
Eucgr.J01630 Eucalyptus grandis HOM05D004769 ORTHO05D005605 4.3e-109 399.1 389 72.2
Mapoly0017s0020 Marchantia polymorpha HOM05D004769 ORTHO05D005605 4.8e-108 395.6 225 82.7
Pp3c14_14980 Physcomitrium patens HOM05D004769 ORTHO05D005605 4.0e-107 392.5 247 73.3
Pp3c14_14989 Physcomitrium patens HOM05D004769 ORTHO05D005605 4.0e-107 392.5 247 73.3
SMO351G0501 Selaginella moellendorffii HOM05D004769 ORTHO05D005605 2.0e-106 390.2 229 79.0
Migut.K01113 Erythranthe guttata HOM05D004769 ORTHO05D005605 4.5e-106 389.0 230 80.0
PSO170G3102 Papaver somniferum HOM05D004769 ORTHO05D005605 2.1e-103 380.2 393 68.2
CBR_g22246 Chara braunii HOM05D004769 ORTHO05D005605 5.7e-101 372.1 230 77.8
CARHR215720 Cardamine hirsuta HOM05D004769 ORTHO05D005605 1.0e-97 361.3 372 65.6
Dinv28230 Davidia involucrata HOM05D004769 ORTHO05D005605 1.6e-87 327.4 320 70.6
CDE02G3274 Ceratophyllum demersum HOM05D004769 ORTHO05D005605 6.9e-83 312.0 154 90.3
Ciclev10015797m.g Citrus clementina HOM05D004769 ORTHO05D005605 1.9e-80 303.9 341 68.6
Pp3c17_5870 Physcomitrium patens HOM05D004769 ORTHO05D005605 2.7e-79 300.1 214 69.2
Lalb_Chr10g0104091 Lupinus albus HOM05D004769 ORTHO05D005605 8.0e-79 298.5 148 89.2
Duzib211G0206 Durio zibethinus HOM05D004769 ORTHO05D005605 9.4e-72 275.0 324 64.5
Sed0026946 Sechium edule HOM05D004769 ORTHO05D005605 2.1e-71 273.9 350 63.7
CDE02G0598 Ceratophyllum demersum HOM05D004769 ORTHO05D005605 1.0e-70 271.6 159 77.4
Nitab4.5_0005193g0040 Nicotiana tabacum HOM05D004769 ORTHO05D005605 1.5e-69 267.7 342 63.7
CDE02G1258 Ceratophyllum demersum HOM05D004769 ORTHO05D005605 5.7e-69 265.8 305 63.0
Ciclev10018227m.g Citrus clementina HOM05D004769 ORTHO05D005605 1.3e-68 264.6 146 85.6
Manes.02G080000 Manihot esculenta HOM05D004769 ORTHO05D005605 7.7e-66 255.4 320 70.3
SEGI_40758 Sequoiadendron giganteum HOM05D004769 ORTHO05D005605 1.9e-64 250.8 155 80.6
Cre03.g178300 Chlamydomonas reinhardtii HOM05D004769 ORTHO05D005605 5.5e-64 249.2 266 52.3
MCO07G113 Micromonas commoda HOM05D004769 ORTHO05D005605 6.3e-60 235.7 218 51.8
Lj1g0013060 Lotus japonicus HOM05D004769 ORTHO05D005605 1.6e-58 231.1 174 67.2
PRCOL_00000163 Prasinoderma coloniale HOM05D004769 ORTHO05D005605 3.5e-58 229.9 204 53.4
Zm00001eb283000 Zea mays HOM05D004769 ORTHO05D005605 1.6e-55 221.1 311 55.6
Oeu048972.1 Olea europaea HOM05D004769 ORTHO05D005605 4.4e-53 213.0 114 85.1
Psat2g044720 Pisum sativum HOM05D004769 ORTHO05D005605 3.1e-51 206.8 297 66.0
Sed0001997 Sechium edule HOM05D004769 ORTHO05D005605 4.5e-50 203.0 101 92.1
Lalb_Chr10g0104101 Lupinus albus HOM05D004769 ORTHO05D005605 3.8e-49 199.9 294 66.0
AT5G37370 Arabidopsis thaliana HOM05D004769 ORTHO05D005605 1.4e-46 191.4 286 58.0
SMO231G0026 Selaginella moellendorffii HOM05D004769 ORTHO05D005605 1.4e-46 191.4 407 48.4
Gohir.A02G124601 Gossypium hirsutum HOM05D004769 ORTHO05D005605 1.8e-46 191.0 96 93.8
CSS0045560 Camellia sinensis var. sinensis HOM05D004769 ORTHO05D005605 1.5e-45 188.0 96 86.5
Aa31LG9G17630 Aethionema arabicum HOM05D004769 ORTHO05D005605 6.4e-44 182.6 98 86.7
SMO231G0020 Selaginella moellendorffii HOM05D004769 ORTHO05D005605 5.4e-43 179.5 129 65.1
Zm00001eb361740 Zea mays HOM05D004769 ORTHO05D005605 4.3e-40 169.9 96 82.3
Gohir.A11G193800 Gossypium hirsutum HOM05D004769 ORTHO05D005605 1.4e-38 164.9 85 91.8
Zm00001eb046660 Zea mays HOM05D004769 ORTHO05D005605 8.9e-38 162.2 84 86.9
FAN05G2233 Fragaria x ananassa HOM05D004769 ORTHO05D005605 4.4e-37 159.8 245 65.3
Zm00001eb221230 Zea mays HOM05D004769 ORTHO05D005605 9.8e-37 158.7 83 85.5
FAN07G1815 Fragaria x ananassa HOM05D004769 ORTHO05D005605 1.7e-36 157.9 240 63.8
HanXRQChr14g0429111 Helianthus annuus HOM05D004769 ORTHO05D005605 2.7e-34 150.6 80 90.0
HanXRQChr14g0429051 Helianthus annuus HOM05D004769 ORTHO05D005605 1.1e-32 145.2 80 87.5
MD01G1153700 Malus domestica HOM05D004769 ORTHO05D005605 2.5e-32 144.1 79 86.1
CSS0036345 Camellia sinensis var. sinensis HOM05D004769 ORTHO05D005605 4.3e-32 143.3 270 63.3
CDE02G3573 Ceratophyllum demersum HOM05D004769 ORTHO05D005605 5.2e-30 136.3 247 44.9
Gohir.A08G086562 Gossypium hirsutum HOM05D004769 ORTHO05D005605 3.7e-28 130.2 83 78.3
Actinidia28787 Actinidia chinensis HOM05D004769 ORTHO05D005605 1.9e-27 127.9 300 48.0
ATR0127G005 Amborella trichopoda HOM05D004769 ORTHO05D005605 5.4e-27 126.3 77 80.5
HanXRQChr08g0224021 Helianthus annuus HOM05D004769 ORTHO05D005605 9.9e-21 105.5 60 85.0
Lj2g0009880 Lotus japonicus HOM05D004769 ORTHO05D005605 9.9e-21 105.5 74 67.6
Lj1g0013083 Lotus japonicus HOM05D004769 ORTHO05D005605 5.4e-19 99.8 68 64.7
AagrBONN_evm.TU.Sc2ySwM_344.2680 Anthoceros agrestis HOM05D004769 ORTHO05D005605 8.1e-15 85.9 237 52.3
SMO351G0097 Selaginella moellendorffii HOM05D007698 ORTHO05D009663 6.9e-14 82.8 61 60.7
FAN23G0276 Fragaria x ananassa HOM05D004769 ORTHO05D005605 1.3e-12 78.6 61 60.7
Zm00001eb313200 Zea mays HOM05D004769 ORTHO05D005605 6.4e-12 76.3 43 83.7


User provided reference genes

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