Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr1.1738 Acer truncatum HOM05D007651 ORTHO05D000898 9.5e-118 426.8 206 100.0
Atru.chr10.1446 Acer truncatum HOM05D004096 ORTHO05D000898 7.9e-80 300.8 252 61.5
Atru.chr5.2180 Acer truncatum HOM05D004096 ORTHO05D000898 1.5e-70 270.0 270 53.3
Atru.chr11.572 Acer truncatum HOM05D007651 ORTHO05D000898 1.3e-69 266.9 201 68.7
Atru.chr13.1926 Acer truncatum HOM05D007651 ORTHO05D000898 1.5e-49 200.3 166 59.6
Atru.chr8.5 Acer truncatum HOM05D004096 ORTHO05D000898 4.8e-45 185.3 167 60.5
Atru.chr12.1974 Acer truncatum HOM05D008396 ORTHO05D000898 1.8e-36 156.8 87 82.8
Atru.chr10.1119 Acer truncatum HOM05D001752 ORTHO05D003933 5.7e-30 135.2 82 82.9
Atru.chr3.1743 Acer truncatum HOM05D008396 ORTHO05D000898 6.8e-23 111.7 60 80.0
Atru.chr3.3033 Acer truncatum HOM05D007651 ORTHO05D000898 1.5e-22 110.5 60 80.0
Atru.chr8.438 Acer truncatum HOM05D004096 ORTHO05D000898 2.0e-22 110.2 117 41.0
Atru.chr3.1364 Acer truncatum HOM05D004096 ORTHO05D000898 4.9e-21 105.5 112 40.2
Atru.chr10.1452 Acer truncatum HOM05D007651 ORTHO05D000898 6.6e-18 95.1 82 58.5
FAN24G1944 Fragaria x ananassa HOM05D004096 ORTHO05D000898 7.3e-17 91.7 124 37.9
FAN20G1880 Fragaria x ananassa HOM05D004096 ORTHO05D000898 9.5e-17 91.3 124 37.9
FAN27G1870 Fragaria x ananassa HOM05D004096 ORTHO05D000898 9.5e-17 91.3 124 37.9
FAN06G1954 Fragaria x ananassa HOM05D004096 ORTHO05D000898 1.2e-16 90.9 142 37.3
RcHm_v2.0_Chr6g0266661 Rosa chinensis HOM05D007993 ORTHO05D000898 1.2e-16 90.9 109 42.2
FvH4_2g09911 Fragaria vesca HOM05D004096 ORTHO05D000898 2.1e-16 90.1 124 37.1
RcHm_v2.0_Chr6g0266671 Rosa chinensis HOM05D004096 ORTHO05D000898 2.8e-16 89.7 108 40.7
FvH4_7g31230 Fragaria vesca HOM05D000045 ORTHO05D000067 1.8e-15 87.0 178 30.3
MSTRG.3530 Avicennia marina HOM05D007651 ORTHO05D001192 8.9e-15 84.7 178 31.5
FvH4_4g05321 Fragaria vesca HOM05D004096 ORTHO05D000898 8.9e-15 84.7 178 30.3
CiPaw.04G045400 Carya illinoinensis HOM05D007651 ORTHO05D001192 1.5e-14 84.0 179 31.8
CiPaw.15G020600 Carya illinoinensis HOM05D007651 ORTHO05D001192 2.0e-14 83.6 179 31.8
Prupe.7G070100 Prunus persica HOM05D004096 ORTHO05D000898 2.0e-14 83.6 177 30.5
SGA_v2.0_scaffold174G39280 Striga asiatica HOM05D007651 ORTHO05D000898 2.0e-14 83.6 179 31.8
Lsat_1_v5_gn_2_81300 Lactuca sativa HOM05D007651 ORTHO05D000898 4.4e-14 82.4 177 31.1
Dinv17911 Davidia involucrata HOM05D008396 ORTHO05D000898 1.7e-13 80.5 110 35.5
FAN12G1875 Fragaria x ananassa HOM05D004096 ORTHO05D000898 1.7e-13 80.5 168 30.4
Dinv12671 Davidia involucrata HOM05D008396 ORTHO05D000898 2.2e-13 80.1 108 36.1
Manes.03G097100 Manihot esculenta HOM05D007651 ORTHO05D001192 3.7e-13 79.3 182 30.2
Gorai.010G218300 Gossypium raimondii HOM05D007651 ORTHO05D000898 4.9e-13 79.0 109 41.3
ECA232G3819 Erigeron canadensis HOM05D007651 ORTHO05D000898 6.4e-13 78.6 175 30.3
Migut.L00474 Erythranthe guttata HOM05D007651 ORTHO05D001192 6.4e-13 78.6 178 30.3
FAN13G0792 Fragaria x ananassa HOM05D017852 ORTHO05D000898 6.4e-13 78.6 109 36.7
HanXRQChr09g0262351 Helianthus annuus HOM05D007651 ORTHO05D000898 1.1e-12 77.8 175 30.3
Lsat_1_v5_gn_4_155061 Lactuca sativa HOM05D007651 ORTHO05D000898 1.1e-12 77.8 175 30.3
Ciclev10021259m.g Citrus clementina HOM05D008396 ORTHO05D000898 1.4e-12 77.4 98 38.8
ECA238G0783 Erigeron canadensis HOM05D007651 ORTHO05D000898 1.4e-12 77.4 178 30.3
HanXRQChr11g0325241 Helianthus annuus HOM05D007651 ORTHO05D000898 1.9e-12 77.0 175 30.3
QL02p048445 Quercus lobata HOM05D007651 ORTHO05D001192 1.9e-12 77.0 108 38.9
THA.LOC104805598 Tarenaya hassleriana HOM05D007651 ORTHO05D000898 1.9e-12 77.0 108 38.0
Ciclev10002333m.g Citrus clementina HOM05D008396 ORTHO05D000898 2.4e-12 76.6 96 39.6
Dinv01422 Davidia involucrata HOM05D008396 ORTHO05D000898 2.4e-12 76.6 202 25.7
Dinv15468 Davidia involucrata HOM05D008396 ORTHO05D000898 2.4e-12 76.6 108 37.0
Gohir.D06G186000 Gossypium hirsutum HOM05D007651 ORTHO05D000898 3.2e-12 76.3 109 40.4
Thecc.10G176700 Theobroma cacao HOM05D007651 ORTHO05D001192 4.1e-12 75.9 109 39.4
Atru.chr1.1775 Acer truncatum HOM05D007651 ORTHO05D001192 5.4e-12 75.5 171 31.0
FAN27G2070 Fragaria x ananassa HOM05D004096 ORTHO05D000898 5.4e-12 75.5 121 36.4
Gohir.A06G176700 Gossypium hirsutum HOM05D007651 ORTHO05D000898 5.4e-12 75.5 109 39.4
Nitab4.5_0000625g0020 Nicotiana tabacum HOM05D007651 ORTHO05D001192 5.4e-12 75.5 175 28.6
Nitab4.5_0000901g0120 Nicotiana tabacum HOM05D007651 ORTHO05D001192 5.4e-12 75.5 175 28.6
Dinv13142 Davidia involucrata HOM05D008396 ORTHO05D000898 9.2e-12 74.7 201 25.9
Duzib106G0239 Durio zibethinus HOM05D007651 ORTHO05D000898 9.2e-12 74.7 109 38.5
Glyma.10G201800 Glycine max HOM05D007651 ORTHO05D000898 9.2e-12 74.7 107 38.3
Actinidia17653 Actinidia chinensis HOM05D007651 ORTHO05D000898 1.2e-11 74.3 177 28.2
COL.COLO4_10042 Corchorus olitorius HOM05D007651 ORTHO05D000898 1.2e-11 74.3 108 38.0
Dinv19003 Davidia involucrata HOM05D007651 ORTHO05D000898 1.2e-11 74.3 175 28.6
Prupe.3G152100 Prunus persica HOM05D007651 ORTHO05D001192 1.2e-11 74.3 109 38.5
CANSAT01G2817 Cannabis sativa HOM05D007651 ORTHO05D001192 1.6e-11 73.9 109 37.6
Haze_14211 Corylus avellana HOM05D006412 ORTHO05D008025 1.6e-11 73.9 108 38.0
Dinv07106 Davidia involucrata HOM05D008396 ORTHO05D000898 1.6e-11 73.9 107 34.6
Rhsim05G0160000 Rhododendron simsii HOM05D011344 ORTHO05D016379 1.6e-11 73.9 109 33.9
Hma1.2p1_1820F.1_g304200 Hydrangea macrophylla HOM05D007651 ORTHO05D001192 2.0e-11 73.6 177 28.2
Peaxi162Scf00104g01921 Petunia axillaris HOM05D007651 ORTHO05D000898 2.0e-11 73.6 107 39.3
CAN.G11.14 Capsicum annuum HOM05D007651 ORTHO05D001192 2.7e-11 73.2 107 37.4
Ciclev10033783m.g Citrus clementina HOM05D008396 ORTHO05D000898 2.7e-11 73.2 98 37.8
Sopen03g007480 Solanum pennellii HOM05D007651 ORTHO05D000898 2.7e-11 73.2 107 37.4
PGSC0003DMG400016690 Solanum tuberosum HOM05D007651 ORTHO05D000898 2.7e-11 73.2 107 37.4
MD09G1260400 Malus domestica HOM05D007651 ORTHO05D001192 3.5e-11 72.8 109 36.7
Solyc03g043600.3 Solanum lycopersicum HOM05D007651 ORTHO05D000898 4.6e-11 72.4 107 36.4
CSS0020998 Camellia sinensis var. sinensis HOM05D007651 ORTHO05D000898 1.0e-10 71.2 177 28.8
Ciclev10011294m.g Citrus clementina HOM05D007651 ORTHO05D001192 1.0e-10 71.2 171 28.7
FAN18G0847 Fragaria x ananassa HOM05D004096 ORTHO05D000898 1.0e-10 71.2 221 27.1
Dinv09269 Davidia involucrata HOM05D008396 ORTHO05D000898 1.3e-10 70.9 106 34.9
Dinv13152 Davidia involucrata HOM05D008396 ORTHO05D000898 1.3e-10 70.9 106 34.9
Dinv17345 Davidia involucrata HOM05D008396 ORTHO05D000898 1.3e-10 70.9 103 34.0
RcHm_v2.0_Chr1g0347831 Rosa chinensis HOM05D004096 ORTHO05D000898 1.3e-10 70.9 121 30.6
RcHm_v2.0_Chr2g0155601 Rosa chinensis HOM05D004096 ORTHO05D000898 1.3e-10 70.9 119 33.6
FAN16G1907 Fragaria x ananassa HOM05D004096 ORTHO05D000898 1.7e-10 70.5 119 29.4
GSVIVG01030888001 Vitis vinifera HOM05D007651 ORTHO05D001192 1.7e-10 70.5 107 36.4
Prupe.7G017400 Prunus persica HOM05D004096 ORTHO05D000898 2.3e-10 70.1 125 32.8
Dinv14218 Davidia involucrata HOM05D008396 ORTHO05D000898 3.0e-10 69.7 108 32.4
Dinv08228 Davidia involucrata HOM05D008396 ORTHO05D000898 3.9e-10 69.3 109 33.9
RcHm_v2.0_Chr4g0423011 Rosa chinensis HOM05D004096 ORTHO05D000898 5.0e-10 68.9 121 29.8
FAN20G0479 Fragaria x ananassa HOM05D004096 ORTHO05D025475 6.6e-10 68.6 119 28.6
FAN25G1629 Fragaria x ananassa HOM05D004096 ORTHO05D000898 6.6e-10 68.6 119 28.6
FvH4_2g27901 Fragaria vesca HOM05D004096 ORTHO05D000898 8.6e-10 68.2 119 28.6
FAN09G4395 Fragaria x ananassa HOM05D004096 ORTHO05D025475 8.6e-10 68.2 119 28.6
Prupe.5G238300 Prunus persica HOM05D004096 ORTHO05D000898 8.6e-10 68.2 109 31.2
Dinv35892 Davidia involucrata HOM05D008396 ORTHO05D000898 1.5e-09 67.4 107 32.7
Potri.004G091800 Populus trichocarpa HOM05D007651 ORTHO05D000898 1.9e-09 67.0 109 35.8
CANSAT35G0470 Cannabis sativa HOM05D029669 ORTHO05D010823 4.3e-09 65.9 112 32.1
Cpa.g.sc116.14 Carica papaya HOM05D007651 ORTHO05D001192 4.3e-09 65.9 109 35.8
Dinv36340 Davidia involucrata HOM05D008396 ORTHO05D000898 9.5e-09 64.7 108 30.6
Dinv17956 Davidia involucrata HOM05D008396 ORTHO05D000898 1.6e-08 63.9 112 29.5
FAN24G2359 Fragaria x ananassa HOM05D004096 ORTHO05D000898 1.6e-08 63.9 119 27.7
RcHm_v2.0_Chr6g0268131 Rosa chinensis HOM05D010142 ORTHO05D012232 2.1e-08 63.5 116 29.3
FvH4_3g18421 Fragaria vesca HOM05D000045 ORTHO05D015658 2.8e-08 63.2 60 45.0
Dinv24488 Davidia involucrata HOM05D008396 ORTHO05D000898 3.6e-08 62.8 95 31.6
CANSAT78G0023 Cannabis sativa HOM05D009769 ORTHO05D010823 2.3e-07 60.1 126 29.4
FAN13G2044 Fragaria x ananassa HOM05D004096 ORTHO05D010213 2.3e-07 60.1 179 27.4
FAN13G3102 Fragaria x ananassa HOM05D004096 ORTHO05D010213 2.3e-07 60.1 179 27.4
FAN18G1768 Fragaria x ananassa HOM05D004096 ORTHO05D010213 2.3e-07 60.1 179 27.4
FAN18G2232 Fragaria x ananassa HOM05D004096 ORTHO05D000898 2.3e-07 60.1 179 27.4
COL.COLO4_20373 Corchorus olitorius HOM05D007993 ORTHO05D000898 4.0e-07 59.3 107 28.0
FAN05G1382 Fragaria x ananassa HOM05D004096 ORTHO05D000898 6.8e-07 58.5 181 26.0
FAN16G2434 Fragaria x ananassa HOM05D004096 ORTHO05D000898 6.8e-07 58.5 181 26.0
FAN22G0991 Fragaria x ananassa HOM05D004096 ORTHO05D000898 6.8e-07 58.5 181 26.0
FAN25G0030 Fragaria x ananassa HOM05D004096 ORTHO05D000898 6.8e-07 58.5 181 26.0
Rhsim02G0161600 Rhododendron simsii HOM05D011344 ORTHO05D016379 6.8e-07 58.5 108 29.6
Rhsim04G0115000 Rhododendron simsii HOM05D007651 ORTHO05D000898 6.8e-07 58.5 107 31.8
Atru.chr10.462 Acer truncatum HOM05D004096 ORTHO05D000898 8.9e-07 58.2 50 48.0
Dinv00223 Davidia involucrata HOM05D008396 ORTHO05D000898 8.9e-07 58.2 101 31.7
FAN14G2992 Fragaria x ananassa HOM05D004096 ORTHO05D010213 1.2e-06 57.8 121 28.9
FAN17G2177 Fragaria x ananassa HOM05D004096 ORTHO05D000898 1.2e-06 57.8 121 28.9
FAN23G0656 Fragaria x ananassa HOM05D004096 ORTHO05D010213 1.2e-06 57.8 121 28.9
FAN28G1999 Fragaria x ananassa HOM05D004096 ORTHO05D010213 1.5e-06 57.4 179 26.8
Rhsim02G0102000 Rhododendron simsii HOM05D002347 ORTHO05D000898 1.5e-06 57.4 110 30.9
Rhsim02G0142200 Rhododendron simsii HOM05D007651 ORTHO05D000898 1.5e-06 57.4 110 30.9
Rhsim09G0109800 Rhododendron simsii HOM05D007651 ORTHO05D000898 1.5e-06 57.4 110 30.9
Nn3g19299 Nelumbo nucifera HOM05D007651 ORTHO05D000898 2.0e-06 57.0 116 31.9
Dinv10433 Davidia involucrata HOM05D008396 ORTHO05D000898 2.6e-06 56.6 66 37.9
FAN02G1156 Fragaria x ananassa HOM05D004096 ORTHO05D000898 2.6e-06 56.6 179 26.8
Dinv40248 Davidia involucrata HOM05D008396 ORTHO05D000898 3.4e-06 56.2 66 37.9
RcHm_v2.0_Chr6g0281911 Rosa chinensis HOM05D004096 ORTHO05D000898 3.4e-06 56.2 126 29.4
vmacro09225 Vaccinium macrocarpon HOM05D007651 ORTHO05D000898 9.9e-06 54.7 107 30.8


User provided reference genes

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