Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr1.1114 Acer truncatum HOM05D002267 ORTHO05D005902 3.2e-292 1007.7 498 100.0
Ciclev10011558m.g Citrus clementina HOM05D002267 ORTHO05D005902 3.3e-257 891.3 494 89.3
Haze_14088 Corylus avellana HOM05D002267 ORTHO05D005902 2.0e-254 882.1 494 87.2
CiPaw.04G004900 Carya illinoinensis HOM05D002267 ORTHO05D005902 3.4e-254 881.3 496 86.3
Cfa007986 Carpinus fangiana HOM05D002267 ORTHO05D005902 4.5e-254 880.9 494 87.4
Thecc.07G119800 Theobroma cacao HOM05D002267 ORTHO05D005902 5.8e-254 880.6 494 86.0
COL.COLO4_17522 Corchorus olitorius HOM05D002267 ORTHO05D005902 2.2e-253 878.6 486 87.4
Duzib213G0616 Durio zibethinus HOM05D002267 ORTHO05D005902 2.2e-253 878.6 494 86.4
QL02p053833 Quercus lobata HOM05D002267 ORTHO05D005902 1.1e-252 876.3 493 87.2
Gohir.D13G154300 Gossypium hirsutum HOM05D002267 ORTHO05D005902 3.2e-252 874.8 498 85.1
Gorai.002G053200 Gossypium raimondii HOM05D002267 ORTHO05D005902 7.1e-252 873.6 494 85.8
Gorai.013G174300 Gossypium raimondii HOM05D002267 ORTHO05D005902 9.3e-252 873.2 498 85.1
Potri.017G109500 Populus trichocarpa HOM05D002267 ORTHO05D005902 7.9e-251 870.2 491 86.6
Gohir.D01G042400 Gossypium hirsutum HOM05D002267 ORTHO05D005902 1.0e-250 869.8 494 85.4
Potri.004G106200 Populus trichocarpa HOM05D002267 ORTHO05D005902 1.3e-250 869.4 494 86.2
Gohir.A01G052800 Gossypium hirsutum HOM05D002267 ORTHO05D005902 1.8e-250 869.0 494 85.2
Gohir.A13G150000 Gossypium hirsutum HOM05D002267 ORTHO05D005902 1.8e-250 869.0 498 84.7
Cpa.g.sc652.3 Carica papaya HOM05D002267 ORTHO05D005902 3.0e-250 868.2 492 85.8
TWI34G0765 Tripterygium wilfordii HOM05D002267 ORTHO05D005902 1.1e-249 866.3 494 85.6
Manes.02G064400 Manihot esculenta HOM05D002267 ORTHO05D005902 2.5e-249 865.1 494 85.0
Dinv34871 Davidia involucrata HOM05D002267 ORTHO05D005902 2.1e-248 862.1 489 86.5
Actinidia36296 Actinidia chinensis HOM05D002267 ORTHO05D005902 8.2e-248 860.1 488 85.2
vmacro05590 Vaccinium macrocarpon HOM05D002267 ORTHO05D005902 1.5e-246 855.9 489 85.1
Sabra04G0076200 Salix brachista HOM05D002267 ORTHO05D005902 4.5e-246 854.4 526 81.0
MD17G1071600 Malus domestica HOM05D002267 ORTHO05D005902 1.7e-245 852.4 492 84.6
DCAR_007527 Daucus carota HOM05D002267 ORTHO05D005902 2.2e-245 852.0 492 82.9
Aqoxy3G03816 Aquilegia oxysepala HOM05D002267 ORTHO05D005902 1.4e-244 849.4 490 84.3
CANSAT64G2636 Cannabis sativa HOM05D002267 ORTHO05D005902 1.4e-244 849.4 492 85.0
CsaV3_5G038940 Cucumis sativus L. HOM05D002267 ORTHO05D005902 1.2e-243 846.3 494 84.4
TAR629G0265 Trochodendron aralioides HOM05D002267 ORTHO05D005902 1.2e-243 846.3 492 83.9
ClCG11G005190 Citrullus lanatus HOM05D002267 ORTHO05D005902 2.1e-243 845.5 494 84.8
Nitab4.5_0011661g0010 Nicotiana tabacum HOM05D002267 ORTHO05D005902 4.6e-243 844.3 492 84.1
Eucgr.J01450 Eucalyptus grandis HOM05D002267 ORTHO05D005902 6.1e-243 844.0 491 83.3
Hund16106 Selenicereus undatus HOM05D002267 ORTHO05D005902 3.0e-242 841.6 490 83.5
Solyc06g005370.3 Solanum lycopersicum HOM05D002267 ORTHO05D005902 3.9e-242 841.3 492 83.7
FAN14G5533 Fragaria x ananassa HOM05D002267 ORTHO05D005902 8.7e-242 840.1 492 83.5
Sed0022523 Sechium edule HOM05D002267 ORTHO05D005902 1.1e-241 839.7 493 82.8
PGSC0003DMG400003469 Solanum tuberosum HOM05D002267 ORTHO05D005902 1.1e-241 839.7 492 83.1
MELO3C022075.2 Cucumis melo HOM05D002267 ORTHO05D005902 1.5e-241 839.3 484 84.7
FvH4_6g45710 Fragaria vesca HOM05D002267 ORTHO05D005902 1.9e-241 839.0 492 83.5
Sopen06g001330 Solanum pennellii HOM05D002267 ORTHO05D005902 1.3e-240 836.3 492 83.3
Medtr7g019260 Medicago truncatula HOM05D002267 ORTHO05D005902 3.7e-240 834.7 492 84.6
FAN09G4431 Fragaria x ananassa HOM05D002267 ORTHO05D005902 6.3e-240 833.9 492 82.9
RcHm_v2.0_Chr2g0163861 Rosa chinensis HOM05D002267 ORTHO05D005902 8.2e-240 833.6 494 83.4
PGR042G2823 Punica granatum HOM05D002267 ORTHO05D005902 3.1e-239 831.6 492 80.7
Peaxi162Scf00465g00103 Petunia axillaris HOM05D002267 ORTHO05D005902 4.1e-239 831.2 503 81.5
Cc03_g12570 Coffea canephora HOM05D002267 ORTHO05D005902 5.3e-239 830.9 492 83.1
FAN26G1557 Fragaria x ananassa HOM05D002267 ORTHO05D005902 6.9e-239 830.5 492 82.5
Oeu049334.1 Olea europaea HOM05D002267 ORTHO05D005902 9.0e-239 830.1 494 82.4
Thhalv10004074m.g Eutrema salsugineum HOM05D002267 ORTHO05D005902 7.7e-238 827.0 491 81.5
Lj2A1079T37 Lonicera japonica HOM05D002267 ORTHO05D005902 7.7e-238 827.0 489 82.4
Nitab4.5_0002077g0130 Nicotiana tabacum HOM05D002267 ORTHO05D005902 1.7e-237 825.9 507 80.9
Ca_06721_v3 Cicer arietinum L. HOM05D002267 ORTHO05D005902 3.8e-237 824.7 493 83.4
Lj1g0004668 Lotus japonicus HOM05D002267 ORTHO05D005902 5.0e-237 824.3 493 82.8
BcaB07g30054 Brassica carinata HOM05D002267 ORTHO05D005902 6.5e-237 823.9 499 80.4
Lalb_Chr17g0336641 Lupinus albus HOM05D002267 ORTHO05D005902 6.5e-237 823.9 490 83.5
AUR62008939 Chenopodium quinoa HOM05D002267 ORTHO05D005902 8.5e-237 823.5 488 81.8
EL10Ac2g04655 Beta vulgaris HOM05D002267 ORTHO05D005902 1.1e-236 823.2 488 82.4
FAN23G1730 Fragaria x ananassa HOM05D002267 ORTHO05D005902 1.1e-236 823.2 492 82.3
Lsat_1_v5_gn_2_86320 Lactuca sativa HOM05D002267 ORTHO05D005902 1.1e-236 823.2 494 81.8
Lalb_Chr04g0258191 Lupinus albus HOM05D002267 ORTHO05D005902 1.1e-236 823.2 490 83.5
AUR62014559 Chenopodium quinoa HOM05D002267 ORTHO05D005902 1.9e-236 822.4 488 82.0
Hund16105 Selenicereus undatus HOM05D002267 ORTHO05D005902 2.5e-236 822.0 528 77.5
CAN.G185.18 Capsicum annuum HOM05D002267 ORTHO05D005902 4.2e-236 821.2 492 81.5
PSO541G0287 Papaver somniferum HOM05D002267 ORTHO05D005902 5.5e-236 820.8 492 81.1
Sc14g0003340 Simmondsia chinensis HOM05D002267 ORTHO05D005902 1.2e-235 819.7 489 82.2
Psat3g192200 Pisum sativum HOM05D002267 ORTHO05D005902 1.6e-235 819.3 497 82.7
SalBow1G1113 Salvia bowleyana HOM05D002267 ORTHO05D005902 2.1e-235 818.9 489 81.8
ECA238G0812 Erigeron canadensis HOM05D002267 ORTHO05D005902 1.0e-234 816.6 476 84.0
Glyma.18G279400 Glycine max HOM05D002267 ORTHO05D005902 1.0e-234 816.6 490 82.4
PSO675G5323 Papaver somniferum HOM05D002267 ORTHO05D005902 1.0e-234 816.6 492 80.9
Aa31LG2G3660 Aethionema arabicum HOM05D002267 ORTHO05D005902 1.4e-234 816.2 498 79.7
AL5G20480 Arabidopsis lyrata HOM05D002267 ORTHO05D005902 1.8e-234 815.8 495 80.2
A02p37120 Brassica napus HOM05D002267 ORTHO05D005902 1.8e-234 815.8 490 80.2
arahy.Tifrunner.gnm1.ann1.D1YG1E Arachis hypogaea HOM05D002267 ORTHO05D005902 3.9e-234 814.7 492 81.3
A06p39620 Brassica napus HOM05D002267 ORTHO05D005902 3.9e-234 814.7 491 80.9
VMungo1383G0144 Vigna mungo HOM05D002267 ORTHO05D005902 6.7e-234 813.9 492 81.5
AT3G30841 Arabidopsis thaliana HOM05D002267 ORTHO05D005902 8.8e-234 813.5 492 80.3
Carub.0006s2794 Capsella rubella HOM05D002267 ORTHO05D005902 8.8e-234 813.5 492 79.5
BraA06t26877Z Brassica rapa HOM05D002267 ORTHO05D005902 1.1e-233 813.1 491 80.7
arahy.Tifrunner.gnm1.ann1.Y9SFAF Arachis hypogaea HOM05D002267 ORTHO05D005902 2.5e-233 812.0 489 81.2
BolC2t11669H Brassica oleracea HOM05D002267 ORTHO05D005902 7.4e-233 810.4 496 78.8
CARHR260400 Cardamine hirsuta HOM05D002267 ORTHO05D005902 9.7e-233 810.1 491 79.2
HanXRQChr17g0559871 Helianthus annuus HOM05D002267 ORTHO05D005902 1.3e-232 809.7 488 81.1
BraA02t08698Z Brassica rapa HOM05D002267 ORTHO05D005902 2.8e-232 808.5 498 78.9
THA.LOC104805546 Tarenaya hassleriana HOM05D002267 ORTHO05D005902 2.8e-232 808.5 493 80.3
BcaC06g33731 Brassica carinata HOM05D002267 ORTHO05D005902 6.3e-232 807.4 488 80.7
BolC7t44387H Brassica oleracea HOM05D002267 ORTHO05D005902 6.3e-232 807.4 491 80.4
C07p38670 Brassica napus HOM05D002267 ORTHO05D005902 1.8e-231 805.8 492 80.3
MSTRG.15422 Avicennia marina HOM05D002267 ORTHO05D005902 2.4e-231 805.4 490 80.8
AT4G09520 Arabidopsis thaliana HOM05D002267 ORTHO05D005902 4.1e-231 804.7 491 80.0
MBI14_g41042_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 4.1e-231 804.7 499 79.4
Ah.10g037400 Amaranthus hybridus HOM05D002267 ORTHO05D005902 6.9e-231 803.9 471 82.0
C02p56120 Brassica napus HOM05D002267 ORTHO05D005902 9.1e-231 803.5 498 78.5
Phvul.008G021600 Phaseolus vulgaris HOM05D002267 ORTHO05D005902 1.5e-230 802.7 492 80.9
AL6G43080 Arabidopsis lyrata HOM05D002267 ORTHO05D005902 2.0e-230 802.4 490 79.4
Migut.K00870 Erythranthe guttata HOM05D002267 ORTHO05D005902 1.4e-228 796.2 489 80.0
SGA_v2.0_scaffold62G21549 Striga asiatica HOM05D002267 ORTHO05D005902 2.5e-228 795.4 493 79.3
HPP92_013287 Vanilla planifolia HOM05D002267 ORTHO05D005902 1.3e-224 783.1 486 79.4
Dinv33904 Davidia involucrata HOM05D002267 ORTHO05D005902 4.1e-223 778.1 436 87.2
ATR0824G083 Amborella trichopoda HOM05D002267 ORTHO05D005902 2.9e-221 771.9 486 78.0
BcaB07g30055 Brassica carinata HOM05D002267 ORTHO05D005902 2.1e-219 765.8 458 81.0
FvH4_5g30870 Fragaria vesca HOM05D002267 ORTHO05D005902 3.3e-217 758.4 445 83.8
Zm00001eb137710 Zea mays HOM05D002267 ORTHO05D005902 2.2e-216 755.7 513 74.5
CDE04G2341 Ceratophyllum demersum HOM05D002267 ORTHO05D005902 1.8e-215 752.7 487 76.2
CDE02G3890 Ceratophyllum demersum HOM05D002267 ORTHO05D005902 7.0e-215 750.7 487 76.2
SEGI_04709 Sequoiadendron giganteum HOM05D002267 ORTHO05D005902 7.2e-212 740.7 493 75.1
Sp2g18250 Schrenkiella parvula HOM05D002267 ORTHO05D005902 1.6e-211 739.6 449 80.2
HanXRQChr07g0200151 Helianthus annuus HOM05D002267 ORTHO05D005902 1.2e-209 733.4 442 81.0
GSVIVG01008609001 Vitis vinifera HOM05D002267 ORTHO05D005902 4.8e-208 728.0 445 82.0
Mapoly0028s0072 Marchantia polymorpha HOM05D002267 ORTHO05D005902 6.8e-202 707.6 490 71.4
Os12g0536000 Oryza sativa ssp. japonica HOM05D002267 ORTHO05D005902 3.7e-200 701.8 441 78.7
SMO239G0110 Selaginella moellendorffii HOM05D002267 ORTHO05D005902 8.6e-197 690.6 487 71.0
Pp3c1_4540 Physcomitrium patens HOM05D002267 ORTHO05D005902 6.1e-195 684.5 489 68.9
TPR.G3251 Trifolium pratense HOM05D002267 ORTHO05D005902 4.0e-194 681.8 387 87.1
CSS0025473 Camellia sinensis var. sinensis HOM05D002267 ORTHO05D005902 1.0e-186 657.1 381 84.3
MBI14_g39140_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 5.2e-186 654.8 490 69.2
Nn4g23627 Nelumbo nucifera HOM05D002267 ORTHO05D005902 2.2e-184 649.4 491 68.4
MBI14_g13654_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 7.8e-182 641.0 472 69.7
unitig_748.g7015 Utricularia gibba HOM05D002267 ORTHO05D005902 1.5e-180 636.7 406 76.4
CBR_g48938 Chara braunii HOM05D002267 ORTHO05D005902 9.8e-177 624.0 505 61.8
FAN05G0821 Fragaria x ananassa HOM05D002267 ORTHO05D005902 3.7e-176 622.1 387 79.6
Psat0s4662g0040 Pisum sativum HOM05D002267 ORTHO05D005902 2.7e-174 615.9 498 66.5
Sabra17G0091700 Salix brachista HOM05D002267 ORTHO05D008106 9.9e-169 597.4 383 77.3
RcHm_v2.0_Chr5g0053071 Rosa chinensis HOM05D002267 ORTHO05D005902 3.7e-168 595.5 389 77.4
vmacro23424 Vaccinium macrocarpon HOM05D002267 ORTHO05D005902 2.7e-166 589.3 464 67.5
Prupe.3G243300 Prunus persica HOM05D002267 ORTHO05D005902 9.6e-164 580.9 349 82.2
Cre12.g527400 Chlamydomonas reinhardtii HOM05D002267 ORTHO05D005902 9.3e-143 511.1 526 50.6
FAN18G0049 Fragaria x ananassa HOM05D002267 ORTHO05D005902 1.0e-136 491.1 269 88.1
PRCOL_00003451 Prasinoderma coloniale HOM05D002267 ORTHO05D005902 3.6e-118 429.5 460 50.4
HanXRQChr03g0070911 Helianthus annuus HOM05D002267 ORTHO05D005902 4.3e-116 422.5 238 85.7
Zm00001eb410550 Zea mays HOM05D002267 ORTHO05D005902 1.2e-110 404.4 238 80.7
FAN13G3322 Fragaria x ananassa HOM05D002267 ORTHO05D005902 9.1e-106 388.3 229 83.4
BcaC03g17613 Brassica carinata HOM05D002267 ORTHO05D005902 3.5e-105 386.3 254 73.6
HanXRQChr03g0070931 Helianthus annuus HOM05D002267 ORTHO05D005902 7.7e-105 385.2 302 66.6
MBI14_g42567_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 2.5e-103 380.2 483 47.2
AagrBONN_evm.TU.Sc2ySwM_228.1779 Anthoceros agrestis HOM05D002267 ORTHO05D005902 1.0e-101 374.8 238 74.8
AagrBONN_evm.TU.Sc2ySwM_362.1960 Anthoceros agrestis HOM05D002267 ORTHO05D005902 3.0e-101 373.2 433 49.9
MD09G1080600 Malus domestica HOM05D002267 ORTHO05D005902 8.5e-96 355.1 303 65.0
HPP92_013297 Vanilla planifolia HOM05D002267 ORTHO05D005902 8.8e-93 345.1 237 73.4
FAN02G0256 Fragaria x ananassa HOM05D002267 ORTHO05D005902 4.1e-90 336.3 314 59.6
SHI33593 Sapria himalayana HOM05D002267 ORTHO05D005902 8.5e-88 328.6 237 70.0
Duzib177G0042 Durio zibethinus HOM05D002267 ORTHO05D005902 2.9e-80 303.5 251 65.7
TPR.G11470 Trifolium pratense HOM05D002267 ORTHO05D005902 4.3e-63 246.5 160 76.9
TAR374G1196 Trochodendron aralioides HOM05D002267 ORTHO05D005902 1.7e-56 224.6 259 50.2
Oeu025125.1 Olea europaea HOM05D002267 ORTHO05D005902 2.8e-54 217.2 150 69.3
BcaC06g30839 Brassica carinata HOM05D002267 ORTHO05D005902 6.4e-51 206.1 300 43.7
BcaB07g30056 Brassica carinata HOM05D002267 ORTHO05D027489 2.1e-46 191.0 104 87.5
HanXRQChr17g0560661 Helianthus annuus HOM05D002267 ORTHO05D027489 8.9e-45 185.7 97 90.7
CARHR060050 Cardamine hirsuta HOM05D002267 ORTHO05D005902 1.7e-43 181.4 145 60.7
HPP92_013296 Vanilla planifolia HOM05D002267 ORTHO05D005902 2.9e-43 180.6 151 64.2
MD09G1080700 Malus domestica HOM05D002267 ORTHO05D005902 8.4e-43 179.1 122 71.3
MBI14_g30826_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D027489 3.9e-40 170.2 105 80.0
Sed0003994 Sechium edule HOM05D002267 ORTHO05D007330 1.2e-33 148.7 146 56.8
MBI14_g13653_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D035901 1.8e-32 144.8 161 49.7
GSVIVG01036480001 Vitis vinifera HOM05D002267 ORTHO05D005902 8.7e-32 142.5 75 88.0
Duzib168G0178 Durio zibethinus HOM05D002267 ORTHO05D029252 2.4e-29 134.4 79 81.0
Glyma.20G047400 Glycine max HOM05D002267 ORTHO05D029252 3.8e-27 127.1 85 72.9
FAN18G1196 Fragaria x ananassa HOM05D002267 ORTHO05D035901 1.8e-21 108.2 76 72.4
Glyma.04G110800 Glycine max HOM05D002267 ORTHO05D029252 3.2e-18 97.4 93 55.9
CAN.G464.25 Capsicum annuum HOM05D002267 ORTHO05D020089 2.8e-14 84.3 61 72.1
RcHm_v2.0_Chr5g0053081 Rosa chinensis HOM05D002267 ORTHO05D035901 2.0e-12 78.2 50 72.0
BcaB04g17555 Brassica carinata HOM05D002267 ORTHO05D092878 2.5e-10 71.2 51 68.6
Glyma.U031218 Glycine max HOM05D002267 ORTHO05D029252 3.2e-10 70.9 36 86.1
Nn5g27547 Nelumbo nucifera HOM05D002267 ORTHO05D027489 1.1e-07 62.4 30 86.7
MELO3C034926.2 Cucumis melo HOM05D002267 ORTHO05D001928 8.2e-06 56.2 38 68.4


User provided reference genes

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