Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.BG.271.p Acer truncatum HOM05D005673 ORTHO05D007081 7.3e-107 390.6 199 100.0
Ciclev10032487m.g Citrus clementina HOM05D005673 ORTHO05D007081 1.5e-80 303.1 235 68.1
Atru.chr12.608 Acer truncatum HOM05D005673 ORTHO05D007081 7.6e-80 300.8 151 100.0
FvH4_7g20560 Fragaria vesca HOM05D005673 ORTHO05D007081 1.9e-70 269.6 237 62.4
FAN03G2886 Fragaria x ananassa HOM05D005673 ORTHO05D007081 1.9e-70 269.6 237 62.4
FAN06G0951 Fragaria x ananassa HOM05D005673 ORTHO05D007081 1.9e-70 269.6 237 62.4
FAN06G2416 Fragaria x ananassa HOM05D005673 ORTHO05D007081 1.9e-70 269.6 237 62.4
FAN10G0505 Fragaria x ananassa HOM05D005673 ORTHO05D007081 2.5e-70 269.2 237 62.0
RcHm_v2.0_Chr1g0364441 Rosa chinensis HOM05D005673 ORTHO05D007081 5.5e-70 268.1 235 62.1
FAN01G1496 Fragaria x ananassa HOM05D005673 ORTHO05D007081 7.2e-70 267.7 239 61.9
FAN01G2008 Fragaria x ananassa HOM05D005673 ORTHO05D007081 7.2e-70 267.7 239 61.9
COL.COLO4_08204 Corchorus olitorius HOM05D005673 ORTHO05D007081 1.2e-69 266.9 233 60.5
Thecc.10G064600 Theobroma cacao HOM05D005673 ORTHO05D007081 2.7e-69 265.8 233 60.1
Potri.008G046400 Populus trichocarpa HOM05D005673 ORTHO05D007081 4.6e-69 265.0 234 57.7
Duzib114G0197 Durio zibethinus HOM05D005673 ORTHO05D007081 6.1e-69 264.6 233 60.5
CiPaw.02G177700 Carya illinoinensis HOM05D005673 ORTHO05D007081 1.8e-68 263.1 230 59.1
Manes.07G105200 Manihot esculenta HOM05D005673 ORTHO05D007081 1.8e-68 263.1 233 58.8
Sabra08G0032600 Salix brachista HOM05D005673 ORTHO05D007081 3.9e-68 261.9 234 57.7
GSVIVG01032643001 Vitis vinifera HOM05D005673 ORTHO05D007081 5.1e-68 261.5 234 57.7
MD07G1182600 Malus domestica HOM05D005673 ORTHO05D007081 1.1e-67 260.4 233 60.9
QL08p057314 Quercus lobata HOM05D005673 ORTHO05D007081 1.5e-67 260.0 234 59.4
MD01G1114500 Malus domestica HOM05D005673 ORTHO05D007081 5.7e-67 258.1 233 60.1
Lalb_Chr19g0126251 Lupinus albus HOM05D005673 ORTHO05D007081 7.4e-67 257.7 230 55.7
Haze_16957 Corylus avellana HOM05D005673 ORTHO05D007081 6.3e-66 254.6 230 57.8
Gorai.010G203600 Gossypium raimondii HOM05D005673 ORTHO05D007081 8.2e-66 254.2 231 60.6
Cfa001572 Carpinus fangiana HOM05D005673 ORTHO05D007081 1.1e-65 253.8 230 57.8
Aqoxy4G03141 Aquilegia oxysepala HOM05D005673 ORTHO05D007081 1.8e-65 253.1 233 56.2
Lj1g0007847 Lotus japonicus HOM05D005673 ORTHO05D007081 1.8e-65 253.1 228 55.3
TWI38G1168 Tripterygium wilfordii HOM05D005673 ORTHO05D007081 1.8e-65 253.1 230 55.7
Gohir.D06G174000 Gossypium hirsutum HOM05D005673 ORTHO05D007081 2.4e-65 252.7 231 60.2
CSS0045417 Camellia sinensis var. sinensis HOM05D005673 ORTHO05D007081 9.1e-65 250.8 230 59.6
Nitab4.5_0000575g0020 Nicotiana tabacum HOM05D005673 ORTHO05D007081 9.1e-65 250.8 234 55.6
Gohir.A06G179004 Gossypium hirsutum HOM05D005673 ORTHO05D007081 2.6e-64 249.2 231 59.7
CSS0019421 Camellia sinensis var. sinensis HOM05D005673 ORTHO05D007081 3.4e-64 248.8 230 59.1
Actinidia03012 Actinidia chinensis HOM05D005673 ORTHO05D007081 4.5e-64 248.4 237 57.4
PSO384G5123 Papaver somniferum HOM05D005673 ORTHO05D007081 4.5e-64 248.4 240 57.5
CANSAT11G2273 Cannabis sativa HOM05D005673 ORTHO05D007081 7.7e-64 247.7 235 56.2
PSO339G1442 Papaver somniferum HOM05D005673 ORTHO05D007081 7.7e-64 247.7 240 57.5
Nitab4.5_0002078g0030 Nicotiana tabacum HOM05D005673 ORTHO05D007081 1.3e-63 246.9 234 55.1
Actinidia38234 Actinidia chinensis HOM05D005673 ORTHO05D007081 1.7e-63 246.5 237 57.0
HanXRQChr08g0219361 Helianthus annuus HOM05D005673 ORTHO05D007081 3.8e-63 245.4 232 55.2
THA.LOC104825722 Tarenaya hassleriana HOM05D005673 ORTHO05D007081 3.8e-63 245.4 237 55.3
Cfa005598 Carpinus fangiana HOM05D005673 ORTHO05D007081 2.7e-61 239.2 227 55.9
MSTRG.9191 Avicennia marina HOM05D005673 ORTHO05D007081 3.6e-61 238.8 234 52.6
CAN.G551.89 Capsicum annuum HOM05D005673 ORTHO05D007081 6.1e-61 238.0 234 53.0
Ca_07421_v3 Cicer arietinum L. HOM05D005673 ORTHO05D007081 6.1e-61 238.0 231 53.2
PGR142G2170 Punica granatum HOM05D005673 ORTHO05D007081 1.0e-60 237.3 235 52.3
ECA233G0150 Erigeron canadensis HOM05D005673 ORTHO05D007081 2.3e-60 236.1 228 53.5
Lj1A928T62 Lonicera japonica HOM05D005673 ORTHO05D007081 3.0e-60 235.7 242 52.1
arahy.Tifrunner.gnm1.ann1.R12QR1 Arachis hypogaea HOM05D005673 ORTHO05D007081 3.9e-60 235.3 231 53.2
Lsat_1_v5_gn_8_21281 Lactuca sativa HOM05D005673 ORTHO05D007081 5.1e-60 235.0 233 52.8
Hund22450 Selenicereus undatus HOM05D005673 ORTHO05D007081 6.7e-60 234.6 239 53.1
Lj1A926T37 Lonicera japonica HOM05D005673 ORTHO05D007081 8.8e-60 234.2 242 51.7
MBI14_g17793_MAGBIO Magnolia biondii HOM05D005673 ORTHO05D007081 8.8e-60 234.2 233 54.1
PGSC0003DMG400002916 Solanum tuberosum HOM05D005673 ORTHO05D007081 1.5e-59 233.4 234 53.0
A09p28870 Brassica napus HOM05D005673 ORTHO05D007081 2.0e-59 233.0 229 55.0
arahy.Tifrunner.gnm1.ann1.YNZN7C Arachis hypogaea HOM05D005673 ORTHO05D007081 3.3e-59 232.3 231 52.8
TPR.G10191 Trifolium pratense HOM05D005673 ORTHO05D007081 4.4e-59 231.9 231 52.8
Sopen12g004500 Solanum pennellii HOM05D005673 ORTHO05D007081 9.7e-59 230.7 234 51.7
CARHR261110 Cardamine hirsuta HOM05D005673 ORTHO05D007081 1.7e-58 229.9 237 53.2
ClCG02G013770 Citrullus lanatus HOM05D005673 ORTHO05D007081 2.2e-58 229.6 234 51.3
Solyc12g009500.2 Solanum lycopersicum HOM05D005673 ORTHO05D007081 2.2e-58 229.6 234 51.3
SGA_v2.0_scaffold62G21443 Striga asiatica HOM05D005673 ORTHO05D007081 2.2e-58 229.6 232 50.0
SalBow4G0159 Salvia bowleyana HOM05D005673 ORTHO05D007081 6.3e-58 228.0 234 49.6
DCAR_015256 Daucus carota HOM05D005673 ORTHO05D007081 8.2e-58 227.6 291 44.3
Glyma.08G340700 Glycine max HOM05D005673 ORTHO05D007081 1.1e-57 227.3 233 51.5
Phvul.008G138600 Phaseolus vulgaris HOM05D005673 ORTHO05D007081 2.4e-57 226.1 232 53.0
AT4G10090 Arabidopsis thaliana HOM05D005673 ORTHO05D007081 3.1e-57 225.7 235 51.5
Sed0006326 Sechium edule HOM05D005673 ORTHO05D007081 3.1e-57 225.7 234 50.4
Aa31LG9G11910 Aethionema arabicum HOM05D005673 ORTHO05D007081 4.1e-57 225.3 230 51.7
Thhalv10028887m.g Eutrema salsugineum HOM05D005673 ORTHO05D007081 4.1e-57 225.3 236 53.0
BcaB01g01447 Brassica carinata HOM05D005673 ORTHO05D007081 5.3e-57 224.9 239 51.9
BcaC04g21010 Brassica carinata HOM05D005673 ORTHO05D007081 5.3e-57 224.9 232 53.0
C09p36690 Brassica napus HOM05D005673 ORTHO05D007081 5.3e-57 224.9 232 53.0
BolC9t56500H Brassica oleracea HOM05D005673 ORTHO05D007081 5.3e-57 224.9 232 53.0
AL6G43874 Arabidopsis lyrata HOM05D005673 ORTHO05D007081 6.9e-57 224.6 235 51.1
Eucgr.G02786 Eucalyptus grandis HOM05D005673 ORTHO05D007081 6.9e-57 224.6 237 51.5
Cc09_g02320 Coffea canephora HOM05D005673 ORTHO05D007081 1.2e-56 223.8 230 51.7
Sp6g07430 Schrenkiella parvula HOM05D005673 ORTHO05D007081 1.2e-56 223.8 237 51.5
AUR62036006 Chenopodium quinoa HOM05D005673 ORTHO05D007081 1.0e-55 220.7 237 51.1
CsaV3_5G006400 Cucumis sativus L. HOM05D005673 ORTHO05D007081 1.0e-55 220.7 234 50.0
Prupe.2G221200 Prunus persica HOM05D005673 ORTHO05D007081 1.3e-55 220.3 196 60.2
Carub.0006s2866 Capsella rubella HOM05D005673 ORTHO05D007081 2.2e-55 219.5 235 50.2
Ah.16g108000 Amaranthus hybridus HOM05D005673 ORTHO05D007081 5.0e-55 218.4 240 50.8
MELO3C011718.2 Cucumis melo HOM05D005673 ORTHO05D007081 5.0e-55 218.4 234 49.1
Rhsim03G0121300 Rhododendron simsii HOM05D005673 ORTHO05D007081 1.9e-54 216.5 222 53.6
Migut.F02013 Erythranthe guttata HOM05D005673 ORTHO05D007081 3.6e-53 212.2 231 48.5
TAR623G0755 Trochodendron aralioides HOM05D005673 ORTHO05D007081 6.1e-53 211.5 196 59.7
EL10Ac2g03532 Beta vulgaris HOM05D005673 ORTHO05D007081 1.0e-52 210.7 233 50.6
HPP92_012063 Vanilla planifolia HOM05D005673 ORTHO05D007081 2.0e-51 206.5 247 46.6
CDE04G2944 Ceratophyllum demersum HOM05D005673 ORTHO05D007081 1.4e-49 200.3 231 46.8
Peaxi162Scf00170g00413 Petunia axillaris HOM05D005673 ORTHO05D007081 1.8e-49 199.9 194 55.2
Nn2g10602 Nelumbo nucifera HOM05D005673 ORTHO05D007081 4.1e-49 198.7 148 67.6
Zm00001eb378810 Zea mays HOM05D005673 ORTHO05D007081 7.7e-48 194.5 233 47.2
Medtr7g047440 Medicago truncatula HOM05D005673 ORTHO05D007081 1.0e-47 194.1 147 61.9
Medtr7g451610 Medicago truncatula HOM05D005673 ORTHO05D007081 1.0e-47 194.1 147 61.9
Medtr7g451710 Medicago truncatula HOM05D005673 ORTHO05D007081 1.0e-47 194.1 147 61.9
Oeu008278.1 Olea europaea HOM05D005673 ORTHO05D007081 3.8e-47 192.2 199 51.3
VMungo1383G1385 Vigna mungo HOM05D005673 ORTHO05D007081 5.0e-47 191.8 147 61.9
vmacro07099 Vaccinium macrocarpon HOM05D005673 ORTHO05D007081 3.2e-46 189.1 207 51.2
MD00G1166800 Malus domestica HOM05D005673 ORTHO05D007081 5.5e-46 188.3 175 58.3
Os03g0284000 Oryza sativa ssp. japonica HOM05D005673 ORTHO05D007081 5.5e-46 188.3 233 46.8
AUR62041616 Chenopodium quinoa HOM05D005673 ORTHO05D007081 3.6e-45 185.7 202 50.5
Dinv25934 Davidia involucrata HOM05D005673 ORTHO05D007081 3.6e-45 185.7 135 68.9
Sc20g0002250 Simmondsia chinensis HOM05D005673 ORTHO05D007081 1.4e-44 183.7 202 49.5
SGA_v2.0_scaffold17G08196 Striga asiatica HOM05D005673 ORTHO05D007081 3.7e-42 175.6 150 57.3
HPP92_012075 Vanilla planifolia HOM05D005673 ORTHO05D007081 1.5e-38 163.7 151 54.3
Hma1.2p1_0348F.1_g131860 Hydrangea macrophylla HOM05D005673 ORTHO05D007081 4.7e-37 158.7 116 63.8
unitig_37.g12298 Utricularia gibba HOM05D005673 ORTHO05D007081 6.8e-36 154.8 122 58.2
Psat3g152960 Pisum sativum HOM05D005673 ORTHO05D007081 4.4e-35 152.1 109 65.1
Psat0s9937g0040 Pisum sativum HOM05D005673 ORTHO05D007081 7.5e-35 151.4 110 70.0
Mapoly0003s0199 Marchantia polymorpha HOM05D005673 ORTHO05D007081 4.0e-28 129.0 246 32.9
AagrBONN_evm.TU.Sc2ySwM_362.1467 Anthoceros agrestis HOM05D005673 ORTHO05D007081 4.1e-25 119.0 253 30.4
SMO347G0616 Selaginella moellendorffii HOM05D005673 ORTHO05D007081 1.7e-23 113.6 197 34.5
Pp3c2_31740 Physcomitrium patens HOM05D005673 ORTHO05D007081 2.9e-23 112.8 264 29.5
PSO713G0026 Papaver somniferum HOM05D005673 ORTHO05D007081 3.3e-22 109.4 115 56.5
Aqoxy4G03136 Aquilegia oxysepala HOM05D005673 ORTHO05D007081 4.3e-22 109.0 113 53.1
HanXRQChr02g0043631 Helianthus annuus HOM05D005673 ORTHO05D007081 4.4e-19 99.0 94 50.0
Cpa.g.sc5360.1 Carica papaya HOM05D005673 ORTHO05D007081 2.3e-15 86.7 48 87.5
HanXRQChr13g0394111 Helianthus annuus HOM05D005673 ORTHO05D007081 4.3e-14 82.4 67 58.2
CBR_g23354 Chara braunii HOM05D005673 ORTHO05D007081 2.8e-13 79.7 157 34.4
Hma1.2p1_0348F.1_g131840 Hydrangea macrophylla HOM05D005673 ORTHO05D007081 2.6e-11 73.2 49 73.5
VMungo1383G3547 Vigna mungo HOM05D005673 ORTHO05D007081 3.7e-10 69.3 51 62.7
Cpa.g.c44350 Carica papaya HOM05D005673 ORTHO05D007081 1.4e-09 67.4 51 62.7
Psat3g152920 Pisum sativum HOM05D005673 ORTHO05D007081 9.2e-09 64.7 51 58.8
Medtr7g050450 Medicago truncatula HOM05D005673 ORTHO05D007081 6.0e-08 62.0 125 33.6
unitig_37.g12299 Utricularia gibba HOM05D005673 ORTHO05D007081 7.8e-08 61.6 63 46.0
HanXRQChr12g0360941 Helianthus annuus HOM05D005673 ORTHO05D007081 3.0e-07 59.7 44 59.1
Psat3g153040 Pisum sativum HOM05D005673 ORTHO05D007081 3.9e-07 59.3 49 57.1


User provided reference genes

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