Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.BG.190.p Acer truncatum HOM05D006654 ORTHO05D008201 9.2e-113 410.2 206 100.0
Gorai.003G121200 Gossypium raimondii HOM05D006654 ORTHO05D008201 7.1e-105 384.0 229 86.0
Haze_07229 Corylus avellana HOM05D006654 ORTHO05D008201 2.7e-104 382.1 229 85.2
QL10p003811 Quercus lobata HOM05D006654 ORTHO05D008201 2.7e-104 382.1 229 85.6
Thecc.03G127500 Theobroma cacao HOM05D006654 ORTHO05D008201 2.7e-104 382.1 229 85.6
CiPaw.12G042200 Carya illinoinensis HOM05D006654 ORTHO05D008201 6.0e-104 380.9 229 85.6
Manes.14G052100 Manihot esculenta HOM05D006654 ORTHO05D008201 7.8e-104 380.6 229 85.2
CSS0035351 Camellia sinensis var. sinensis HOM05D006654 ORTHO05D008201 1.7e-103 379.4 229 85.2
TWI23G1026 Tripterygium wilfordii HOM05D006654 ORTHO05D008201 1.7e-103 379.4 229 84.7
GSVIVG01008527001 Vitis vinifera HOM05D006654 ORTHO05D008201 1.7e-103 379.4 229 84.3
ClCG03G003720 Citrullus lanatus HOM05D006654 ORTHO05D008201 3.9e-103 378.3 229 85.2
CsaV3_1G009610 Cucumis sativus L. HOM05D006654 ORTHO05D008201 3.9e-103 378.3 229 85.2
Manes.06G118600 Manihot esculenta HOM05D006654 ORTHO05D008201 3.9e-103 378.3 229 84.3
Rhsim12G0173900 Rhododendron simsii HOM05D006654 ORTHO05D008201 3.9e-103 378.3 229 84.7
RcHm_v2.0_Chr1g0314831 Rosa chinensis HOM05D006654 ORTHO05D008201 6.6e-103 377.5 229 84.7
Hma1.2p1_0014F.1_g009560 Hydrangea macrophylla HOM05D006654 ORTHO05D008201 8.7e-103 377.1 229 84.3
Prupe.4G287600 Prunus persica HOM05D006654 ORTHO05D008201 1.5e-102 376.3 229 84.3
Lsat_1_v5_gn_4_76920 Lactuca sativa HOM05D006654 ORTHO05D008201 3.3e-102 375.2 229 84.3
MD02G1316100 Malus domestica HOM05D006654 ORTHO05D008201 4.3e-102 374.8 229 84.3
Actinidia08864 Actinidia chinensis HOM05D006654 ORTHO05D008201 7.3e-102 374.0 229 83.4
FAN01G0962 Fragaria x ananassa HOM05D006654 ORTHO05D008201 7.3e-102 374.0 229 83.4
FAN06G4528 Fragaria x ananassa HOM05D006654 ORTHO05D008201 7.3e-102 374.0 229 83.4
arahy.Tifrunner.gnm1.ann1.S79YT6 Arachis hypogaea HOM05D006654 ORTHO05D008201 9.6e-102 373.6 229 83.0
MD07G1005800 Malus domestica HOM05D006654 ORTHO05D008201 9.6e-102 373.6 229 83.8
MBI07_g34629_MAGBIO Magnolia biondii HOM05D006654 ORTHO05D008201 1.3e-101 373.2 229 83.8
TAR371G0211 Trochodendron aralioides HOM05D006654 ORTHO05D008201 1.3e-101 373.2 229 83.0
FAN03G1885 Fragaria x ananassa HOM05D006654 ORTHO05D008201 1.6e-101 372.9 229 83.0
FvH4_7g00630 Fragaria vesca HOM05D006654 ORTHO05D008201 2.1e-101 372.5 229 83.0
AL8G40500 Arabidopsis lyrata HOM05D006654 ORTHO05D008201 2.8e-101 372.1 229 82.5
FAN10G2487 Fragaria x ananassa HOM05D006654 ORTHO05D008201 2.8e-101 372.1 229 83.0
ECA232G0809 Erigeron canadensis HOM05D006654 ORTHO05D008201 3.6e-101 371.7 229 82.5
FAN01G2458 Fragaria x ananassa HOM05D006654 ORTHO05D008201 3.6e-101 371.7 229 82.5
Gohir.A03G052100 Gossypium hirsutum HOM05D006654 ORTHO05D008201 6.2e-101 370.9 205 90.7
Potri.012G096500 Populus trichocarpa HOM05D006654 ORTHO05D008201 6.2e-101 370.9 229 83.0
Aa31LG1G18600 Aethionema arabicum HOM05D006654 ORTHO05D008201 1.1e-100 370.2 229 81.2
Carub.0008s2414 Capsella rubella HOM05D006654 ORTHO05D008201 1.1e-100 370.2 229 82.1
Aqoxy5G03402 Aquilegia oxysepala HOM05D006654 ORTHO05D008201 1.4e-100 369.8 229 82.5
Glyma.20G249100 Glycine max HOM05D006654 ORTHO05D008201 1.4e-100 369.8 229 81.7
HanXRQChr16g0497681 Helianthus annuus HOM05D006654 ORTHO05D008201 1.4e-100 369.8 230 83.0
EL10As4g23406 Beta vulgaris HOM05D006654 ORTHO05D008201 2.4e-100 369.0 229 81.2
vmacro16672 Vaccinium macrocarpon HOM05D006654 ORTHO05D008201 3.1e-100 368.6 199 91.0
SGA_v2.0_scaffold161G37776 Striga asiatica HOM05D006654 ORTHO05D008201 4.0e-100 368.2 229 82.1
AT5G63440 Arabidopsis thaliana HOM05D006654 ORTHO05D008201 5.3e-100 367.9 229 81.7
Sp2g26520 Schrenkiella parvula HOM05D006654 ORTHO05D008201 5.3e-100 367.9 229 80.8
Oeu023486.1 Olea europaea HOM05D006654 ORTHO05D008201 6.9e-100 367.5 229 80.8
Phvul.007G001300 Phaseolus vulgaris HOM05D006654 ORTHO05D008201 6.9e-100 367.5 229 81.2
PGR083G1205 Punica granatum HOM05D006654 ORTHO05D008201 6.9e-100 367.5 229 82.1
CANSAT80G1342 Cannabis sativa HOM05D006654 ORTHO05D008201 1.2e-99 366.7 229 82.1
CARHR277290 Cardamine hirsuta HOM05D006654 ORTHO05D008201 1.2e-99 366.7 229 80.8
BcaC01g02588 Brassica carinata HOM05D006654 ORTHO05D008201 1.5e-99 366.3 229 80.3
THA.LOC104818189 Tarenaya hassleriana HOM05D006654 ORTHO05D008201 1.5e-99 366.3 229 80.8
Cpa.g.sc13.133 Carica papaya HOM05D006654 ORTHO05D008201 2.0e-99 365.9 199 89.9
AUR62029635 Chenopodium quinoa HOM05D006654 ORTHO05D008201 2.0e-99 365.9 229 80.8
Eucgr.F01379 Eucalyptus grandis HOM05D006654 ORTHO05D008201 2.6e-99 365.5 229 81.7
Thhalv10004858m.g Eutrema salsugineum HOM05D006654 ORTHO05D008201 2.6e-99 365.5 229 80.3
Sc10g0010430 Simmondsia chinensis HOM05D006654 ORTHO05D008201 7.6e-99 364.0 229 79.9
Nn4g22349 Nelumbo nucifera HOM05D006654 ORTHO05D008201 9.9e-99 363.6 229 80.8
Os07g0295200 Oryza sativa ssp. japonica HOM05D006654 ORTHO05D008201 9.9e-99 363.6 229 80.8
Cc04_g10050 Coffea canephora HOM05D006654 ORTHO05D008201 1.3e-98 363.2 229 80.8
Hma1.2p1_0014F.1_g009570 Hydrangea macrophylla HOM05D006654 ORTHO05D008201 1.3e-98 363.2 191 92.7
PSO063G4350 Papaver somniferum HOM05D006654 ORTHO05D008201 1.3e-98 363.2 229 81.2
PSO782G1240 Papaver somniferum HOM05D006654 ORTHO05D008201 1.3e-98 363.2 229 81.2
arahy.Tifrunner.gnm1.ann1.653AWM Arachis hypogaea HOM05D006654 ORTHO05D008201 2.2e-98 362.5 199 89.4
Migut.I00498 Erythranthe guttata HOM05D006654 ORTHO05D008201 3.8e-98 361.7 229 79.9
Nitab4.5_0004750g0080 Nicotiana tabacum HOM05D006654 ORTHO05D008201 3.8e-98 361.7 229 79.9
Mapoly0061s0139 Marchantia polymorpha HOM05D006654 ORTHO05D008201 6.4e-98 360.9 229 79.5
Potri.015G094300 Populus trichocarpa HOM05D006654 ORTHO05D008201 8.4e-98 360.5 229 80.8
SEGI_01164 Sequoiadendron giganteum HOM05D006654 ORTHO05D008201 8.4e-98 360.5 229 80.3
Peaxi162Scf00089g00632 Petunia axillaris HOM05D006654 ORTHO05D008201 1.1e-97 360.1 229 79.5
HPP92_000346 Vanilla planifolia HOM05D006654 ORTHO05D008201 1.1e-97 360.1 229 80.3
CAN.G352.15 Capsicum annuum HOM05D006654 ORTHO05D008201 1.9e-97 359.4 229 79.5
PGSC0003DMG402015240 Solanum tuberosum HOM05D006654 ORTHO05D008201 3.2e-97 358.6 229 79.0
CDE05G1175 Ceratophyllum demersum HOM05D006654 ORTHO05D008201 4.2e-97 358.2 229 79.0
TPR.G39480 Trifolium pratense HOM05D006654 ORTHO05D008201 4.2e-97 358.2 229 79.0
Ca_11428_v3 Cicer arietinum L. HOM05D006654 ORTHO05D008201 7.1e-97 357.5 229 78.6
Lj5g0001059 Lotus japonicus HOM05D006654 ORTHO05D008201 7.1e-97 357.5 229 78.6
Nitab4.5_0003282g0120 Nicotiana tabacum HOM05D006654 ORTHO05D008201 2.7e-96 355.5 229 79.0
Solyc03g111330.4 Solanum lycopersicum HOM05D006654 ORTHO05D008201 7.9e-96 354.0 229 78.6
VMungo0720G2310 Vigna mungo HOM05D006654 ORTHO05D008201 1.3e-95 353.2 255 72.9
SMO364G0616 Selaginella moellendorffii HOM05D006654 ORTHO05D008201 6.7e-95 350.9 229 76.9
Dinv11162 Davidia involucrata HOM05D006654 ORTHO05D008201 5.6e-94 347.8 199 86.9
Medtr1g117000 Medicago truncatula HOM05D001235 ORTHO05D005684 1.3e-93 346.7 199 84.9
Pp3c22_11190 Physcomitrium patens HOM05D006654 ORTHO05D008201 1.6e-93 346.3 229 76.0
Pp3c22_11201 Physcomitrium patens HOM05D006654 ORTHO05D008201 1.6e-93 346.3 229 76.0
Duzib068G1280 Durio zibethinus HOM05D006654 ORTHO05D008201 2.1e-93 345.9 229 80.3
Pp3c18_15000 Physcomitrium patens HOM05D006654 ORTHO05D008201 3.7e-93 345.1 229 76.9
MELO3C002357.2 Cucumis melo HOM05D006654 ORTHO05D008201 6.9e-92 340.9 221 80.1
Zm00001eb305410 Zea mays HOM05D006654 ORTHO05D008201 9.0e-92 340.5 191 85.9
ATR0561G261 Amborella trichopoda HOM05D006654 ORTHO05D008201 2.0e-91 339.3 199 84.4
Oeu044257.1 Olea europaea HOM05D006654 ORTHO05D008201 8.4e-90 334.0 296 62.2
Nn3g16497 Nelumbo nucifera HOM05D006654 ORTHO05D008201 2.1e-77 292.7 195 79.0
Psat6g243960 Pisum sativum HOM05D006654 ORTHO05D008201 3.7e-77 292.0 160 85.6
Ciclev10021838m.g Citrus clementina HOM05D006654 ORTHO05D008201 6.3e-77 291.2 186 83.3
Lalb_Chr06g0164681 Lupinus albus HOM05D006654 ORTHO05D008201 8.2e-77 290.8 229 69.4
Gohir.D03G115000 Gossypium hirsutum HOM05D006654 ORTHO05D008201 4.1e-76 288.5 188 81.9
Sopen03g030460 Solanum pennellii HOM05D006654 ORTHO05D008201 1.5e-75 286.6 194 76.3
COL.COLO4_28092 Corchorus olitorius HOM05D006654 ORTHO05D008201 5.9e-75 284.6 185 81.1
Prupe.1G190000 Prunus persica HOM05D006654 ORTHO05D008201 2.2e-74 282.7 185 81.1
Sed0016483 Sechium edule HOM05D006654 ORTHO05D008201 2.9e-74 282.3 185 81.1
Lj9A478G90 Lonicera japonica HOM05D006654 ORTHO05D008201 1.6e-72 276.6 147 94.6
C03p63160 Brassica napus HOM05D001045 ORTHO05D004836 2.1e-72 276.2 186 76.9
BolC3t18571H Brassica oleracea HOM05D001045 ORTHO05D004836 2.1e-72 276.2 186 76.9
A06p30050 Brassica napus HOM05D001045 ORTHO05D004836 2.7e-72 275.8 197 73.6
BraA06t25957Z Brassica rapa HOM05D001045 ORTHO05D004836 2.7e-72 275.8 197 73.6
Ca_29862_v3 Cicer arietinum L. HOM05D006654 ORTHO05D008201 6.7e-71 271.2 185 75.7
CBR_g21852 Chara braunii HOM05D006654 ORTHO05D008201 2.5e-70 269.2 161 78.3
Sabra15G0115700 Salix brachista HOM05D006654 ORTHO05D008201 2.5e-70 269.2 160 86.9
AagrBONN_evm.TU.Sc2ySwM_228.2755 Anthoceros agrestis HOM05D006654 ORTHO05D008201 2.2e-58 229.6 128 82.8
AUR62025924 Chenopodium quinoa HOM05D006654 ORTHO05D008201 1.3e-50 203.8 142 75.4
MSTRG.4601 Avicennia marina HOM05D006654 ORTHO05D008201 1.7e-50 203.4 142 76.1
Hund10171 Selenicereus undatus HOM05D006654 ORTHO05D008201 2.7e-48 196.1 158 66.5
LjContig00075g0008356 Lotus japonicus HOM05D006654 ORTHO05D008201 5.0e-42 175.3 172 61.0
CAN.G1225.1 Capsicum annuum HOM05D003952 ORTHO05D008201 2.7e-40 169.5 110 76.4
C09p09330 Brassica napus HOM05D006654 ORTHO05D008201 5.2e-39 165.2 127 71.7
BolC9t53845H Brassica oleracea HOM05D006654 ORTHO05D008201 5.2e-39 165.2 127 71.7
BcaC04g23328 Brassica carinata HOM05D006654 ORTHO05D008201 2.2e-37 159.8 122 72.1
MCO06G092 Micromonas commoda HOM05D006654 ORTHO05D008201 7.0e-36 154.8 232 43.5
SalBow1G2859 Salvia bowleyana HOM05D006654 ORTHO05D008201 1.3e-29 134.0 105 73.3
SalBow1G7869 Salvia bowleyana HOM05D006654 ORTHO05D008201 1.3e-29 134.0 105 73.3
Cre12.g485750 Chlamydomonas reinhardtii HOM05D006654 ORTHO05D008201 2.8e-29 132.9 202 38.6
SHI10786 Sapria himalayana HOM05D006654 ORTHO05D008201 6.3e-29 131.7 90 68.9
BcaB04g19916 Brassica carinata HOM05D006654 ORTHO05D008201 7.0e-28 128.3 82 84.1
PRCOL_00005389 Prasinoderma coloniale HOM05D006654 ORTHO05D008201 5.6e-25 118.6 218 35.3
Prupe.2G008500 Prunus persica HOM05D006654 ORTHO05D008201 2.0e-19 100.1 84 71.4
RcHm_v2.0_Chr7g0215371 Rosa chinensis HOM05D006654 ORTHO05D008201 2.8e-16 89.7 101 49.5
Pp3c19_20620 Physcomitrium patens HOM05D006654 ORTHO05D008201 1.3e-13 80.9 100 52.0
CBR_g70955 Chara braunii HOM05D006654 ORTHO05D008201 2.1e-08 63.5 66 57.6
CBR_g79910 Chara braunii HOM05D049801 ORTHO05D043924 8.1e-08 61.6 107 37.4
CAN.G176.15 Capsicum annuum HOM05D002321 ORTHO05D007292 1.8e-07 60.5 38 73.7
Lsat_1_v5_gn_6_64721 Lactuca sativa HOM05D001937 ORTHO05D003828 2.6e-06 56.6 30 93.3


User provided reference genes

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