Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.BG.186.p Acer truncatum HOM05D006707 ORTHO05D008243 4.2e-86 323.2 218 100.0
MD06G1231100 Malus domestica HOM05D006707 ORTHO05D008243 1.8e-52 211.5 218 70.6
Prupe.5G232400 Prunus persica HOM05D006707 ORTHO05D008243 5.2e-52 209.9 218 72.0
Cfa019000 Carpinus fangiana HOM05D006707 ORTHO05D008243 4.4e-51 206.8 218 75.7
Dinv07298 Davidia involucrata HOM05D006707 ORTHO05D008243 7.4e-51 206.1 218 72.0
Dinv27614 Davidia involucrata HOM05D006707 ORTHO05D008243 7.4e-51 206.1 218 72.0
CANSAT11G1044 Cannabis sativa HOM05D006707 ORTHO05D008243 7.0e-49 199.5 216 71.8
QL11p013929 Quercus lobata HOM05D006707 ORTHO05D008243 1.2e-48 198.7 219 63.9
GSVIVG01016661001 Vitis vinifera HOM05D006707 ORTHO05D008243 2.0e-48 198.0 218 69.3
Nn4g24204 Nelumbo nucifera HOM05D006707 ORTHO05D008243 2.6e-48 197.6 218 70.6
TAR622G1063 Trochodendron aralioides HOM05D006707 ORTHO05D008243 2.6e-48 197.6 218 70.6
Thecc.03G054200 Theobroma cacao HOM05D006707 ORTHO05D008243 3.5e-48 197.2 218 62.4
Manes.06G007500 Manihot esculenta HOM05D006707 ORTHO05D008243 2.2e-47 194.5 218 68.8
QL11p014448 Quercus lobata HOM05D006707 ORTHO05D008243 2.2e-47 194.5 219 63.0
FvH4_5g17250 Fragaria vesca HOM05D006707 ORTHO05D008243 8.5e-47 192.6 218 66.5
FAN18G2052 Fragaria x ananassa HOM05D006707 ORTHO05D008243 8.5e-47 192.6 218 66.5
FAN08G3326 Fragaria x ananassa HOM05D006707 ORTHO05D008243 1.1e-46 192.2 218 66.5
RcHm_v2.0_Chr7g0178541 Rosa chinensis HOM05D006707 ORTHO05D008243 2.5e-46 191.0 218 70.2
Potri.015G039300 Populus trichocarpa HOM05D006707 ORTHO05D008243 3.2e-46 190.7 218 69.3
Haze_21123 Corylus avellana HOM05D006707 ORTHO05D008243 7.2e-46 189.5 218 72.9
RhsimUnG0220600 Rhododendron simsii HOM05D006707 ORTHO05D008243 9.4e-46 189.1 218 68.8
RhsimUnG0239000 Rhododendron simsii HOM05D006707 ORTHO05D008243 9.4e-46 189.1 218 68.8
Lj5P156T67 Lonicera japonica HOM05D006707 ORTHO05D008243 1.6e-45 188.3 218 68.3
COL.COLO4_35387 Corchorus olitorius HOM05D006707 ORTHO05D008243 2.1e-45 188.0 218 62.8
Migut.I00309 Erythranthe guttata HOM05D006707 ORTHO05D008243 2.1e-45 188.0 218 66.5
Rhsim03G0042300 Rhododendron simsii HOM05D006707 ORTHO05D008243 8.0e-45 186.0 218 67.9
Sabra15G0038500 Salix brachista HOM05D006707 ORTHO05D008243 8.0e-45 186.0 218 68.3
Lj5A157G52 Lonicera japonica HOM05D006707 ORTHO05D008243 1.8e-44 184.9 218 67.9
Sabra15G0069900 Salix brachista HOM05D006707 ORTHO05D008243 2.3e-44 184.5 218 67.9
Sabra15G0070700 Salix brachista HOM05D006707 ORTHO05D008243 2.3e-44 184.5 218 67.9
Duzib205G0649 Durio zibethinus HOM05D006707 ORTHO05D008243 4.0e-44 183.7 218 61.0
Actinidia25143 Actinidia chinensis HOM05D006707 ORTHO05D008243 8.8e-44 182.6 218 67.4
Oeu010709.1 Olea europaea HOM05D006707 ORTHO05D008243 2.0e-43 181.4 218 63.8
Cpa.g.sc3.405 Carica papaya HOM05D006707 ORTHO05D008243 2.6e-43 181.0 217 65.4
Sabra15G0057600 Salix brachista HOM05D006707 ORTHO05D008243 2.6e-43 181.0 218 67.0
EL10Ac3g06722 Beta vulgaris HOM05D006707 ORTHO05D008243 5.7e-43 179.9 218 66.5
Glyma.18G207800 Glycine max HOM05D006707 ORTHO05D008243 7.5e-43 179.5 218 67.9
Ca_07699_v3 Cicer arietinum L. HOM05D006707 ORTHO05D000099 9.7e-43 179.1 218 66.1
TWI81G0630 Tripterygium wilfordii HOM05D006707 ORTHO05D008243 9.7e-43 179.1 208 70.2
CiPaw.15G142400 Carya illinoinensis HOM05D006707 ORTHO05D008243 1.7e-42 178.3 218 69.3
MSTRG.16972 Avicennia marina HOM05D006707 ORTHO05D008243 2.2e-42 177.9 218 66.5
Phvul.010G093200 Phaseolus vulgaris HOM05D006707 ORTHO05D008243 6.3e-42 176.4 218 67.9
VMungo1383G0390 Vigna mungo HOM05D006707 ORTHO05D008243 6.3e-42 176.4 218 67.0
CAN.G1129.54 Capsicum annuum HOM05D006707 ORTHO05D008243 8.2e-42 176.0 216 67.1
Sc10g0004790 Simmondsia chinensis HOM05D006707 ORTHO05D008243 3.1e-41 174.1 216 67.6
Peaxi162Scf00683g00048 Petunia axillaris HOM05D006707 ORTHO05D008243 5.3e-41 173.3 219 66.2
DCAR_014733 Daucus carota HOM05D006707 ORTHO05D008243 9.1e-41 172.6 219 63.9
Psat3g124000 Pisum sativum HOM05D006707 ORTHO05D008243 1.6e-40 171.8 218 64.2
ClCG06G014360 Citrullus lanatus HOM05D006707 ORTHO05D008243 4.5e-40 170.2 218 66.5
TPR.G37093 Trifolium pratense HOM05D006707 ORTHO05D008243 5.9e-40 169.9 218 64.2
Lj1g0019371 Lotus japonicus HOM05D006707 ORTHO05D008243 1.0e-39 169.1 218 64.7
Solyc03g118790.3 Solanum lycopersicum HOM05D006707 ORTHO05D008243 1.0e-39 169.1 219 63.9
PGSC0003DMG400005747 Solanum tuberosum HOM05D006707 ORTHO05D008243 1.0e-39 169.1 219 63.0
Sopen03g037740 Solanum pennellii HOM05D006707 ORTHO05D008243 1.3e-39 168.7 219 63.5
CsaV3_1G004300 Cucumis sativus L. HOM05D006707 ORTHO05D008243 2.2e-39 167.9 218 65.6
Nitab4.5_0001456g0170 Nicotiana tabacum HOM05D006707 ORTHO05D008243 2.9e-39 167.5 218 65.1
SalBow6G7169 Salvia bowleyana HOM05D006707 ORTHO05D008243 3.8e-39 167.2 218 63.3
AUR62035349 Chenopodium quinoa HOM05D006707 ORTHO05D008243 5.0e-39 166.8 218 63.8
Nitab4.5_0003968g0010 Nicotiana tabacum HOM05D006707 ORTHO05D008243 5.0e-39 166.8 218 65.6
Medtr7g070420 Medicago truncatula HOM05D006707 ORTHO05D008243 6.5e-39 166.4 218 63.8
BcaC05g28725 Brassica carinata HOM05D006707 ORTHO05D008243 8.5e-39 166.0 218 67.4
A05p31810 Brassica napus HOM05D006707 ORTHO05D008243 8.5e-39 166.0 218 67.0
BolC5t33562H Brassica oleracea HOM05D006707 ORTHO05D008243 8.5e-39 166.0 218 67.4
BraA05t22012Z Brassica rapa HOM05D006707 ORTHO05D008243 8.5e-39 166.0 218 67.0
C05p48280 Brassica napus HOM05D006707 ORTHO05D008243 1.1e-38 165.6 218 67.9
PGR044G0521 Punica granatum HOM05D006707 ORTHO05D008243 2.5e-38 164.5 219 62.1
AUR62035893 Chenopodium quinoa HOM05D006707 ORTHO05D008243 9.4e-38 162.5 218 61.9
AL3G31170 Arabidopsis lyrata HOM05D006707 ORTHO05D008243 1.2e-37 162.2 218 65.1
TPR.G35815 Trifolium pratense HOM05D006707 ORTHO05D008243 4.7e-37 160.2 213 64.3
AT3G18020 Arabidopsis thaliana HOM05D006707 ORTHO05D008243 8.0e-37 159.5 218 64.7
BcaB06g25867 Brassica carinata HOM05D006707 ORTHO05D008243 8.0e-37 159.5 218 67.0
Sed0000825 Sechium edule HOM05D006707 ORTHO05D008243 3.0e-36 157.5 216 62.5
HPP92_007817 Vanilla planifolia HOM05D006707 ORTHO05D008243 4.0e-36 157.1 218 46.8
Aa31LG8G4870 Aethionema arabicum HOM05D006707 ORTHO05D008243 5.2e-36 156.8 216 64.4
Thhalv10020183m.g Eutrema salsugineum HOM05D006707 ORTHO05D008243 5.2e-36 156.8 218 64.2
THA.LOC104820351 Tarenaya hassleriana HOM05D006707 ORTHO05D008243 5.2e-36 156.8 218 63.8
Cc04_g06350 Coffea canephora HOM05D006707 ORTHO05D008243 1.2e-35 155.6 219 66.2
PSO478G5041 Papaver somniferum HOM05D006707 ORTHO05D008243 1.2e-35 155.6 219 63.0
CARHR093330 Cardamine hirsuta HOM05D006707 ORTHO05D008243 2.0e-35 154.8 218 64.7
Ah.04g153500 Amaranthus hybridus HOM05D006707 ORTHO05D008243 3.4e-35 154.1 218 62.8
Aqoxy3G00090 Aquilegia oxysepala HOM05D006707 ORTHO05D008243 4.4e-35 153.7 217 63.1
SGA_v2.0_scaffold192G40603 Striga asiatica HOM05D006707 ORTHO05D008243 4.4e-35 153.7 218 59.2
Carub.0003s1773 Capsella rubella HOM05D006707 ORTHO05D008243 7.5e-35 152.9 218 64.2
Eucgr.K02270 Eucalyptus grandis HOM05D006707 ORTHO05D008243 7.5e-35 152.9 220 63.2
Lalb_Chr04g0260761 Lupinus albus HOM05D006707 ORTHO05D008243 1.7e-34 151.8 216 61.1
Sp3g16130 Schrenkiella parvula HOM05D006707 ORTHO05D008243 2.8e-34 151.0 218 65.6
Hund22248 Selenicereus undatus HOM05D006707 ORTHO05D008243 6.3e-34 149.8 218 62.4
Lsat_1_v5_gn_6_99620 Lactuca sativa HOM05D006707 ORTHO05D008243 1.2e-32 145.6 222 60.4
vmacro07812 Vaccinium macrocarpon HOM05D006707 ORTHO05D008243 1.6e-32 145.2 218 42.2
arahy.Tifrunner.gnm1.ann1.72MQAV Arachis hypogaea HOM05D000449 ORTHO05D008243 9.5e-30 136.0 218 59.6
arahy.Tifrunner.gnm1.ann1.U18B68 Arachis hypogaea HOM05D000449 ORTHO05D008243 6.1e-29 133.3 218 59.2
arahy.Tifrunner.gnm1.ann1.09GK0V Arachis hypogaea HOM05D004415 ORTHO05D005198 1.8e-28 131.7 218 58.7
HanXRQChr10g0279071 Helianthus annuus HOM05D006707 ORTHO05D008243 4.4e-27 127.1 223 56.5
ATR0564G450 Amborella trichopoda HOM05D006707 ORTHO05D008243 9.8e-27 125.9 217 58.5
Haze_18837 Corylus avellana HOM05D006707 ORTHO05D008243 6.6e-23 113.2 93 62.4
PSO017G3187 Papaver somniferum HOM05D006707 ORTHO05D008243 5.2e-20 103.6 103 53.4
CDE07G1516 Ceratophyllum demersum HOM05D006707 ORTHO05D008243 5.4e-17 93.6 218 51.4
SEGI_24072 Sequoiadendron giganteum HOM05D006707 ORTHO05D008243 5.9e-16 90.1 201 55.7
Ciclev10024364m.g Citrus clementina HOM05D006707 ORTHO05D008243 2.3e-15 88.2 64 70.3
CSS0017365 Camellia sinensis var. sinensis HOM05D006707 ORTHO05D008243 4.4e-11 73.9 59 61.0
CSS0026236 Camellia sinensis var. sinensis HOM05D006707 ORTHO05D008243 4.4e-11 73.9 59 61.0
Os07g0674300 Oryza sativa ssp. japonica HOM05D006707 ORTHO05D008243 4.4e-11 73.9 225 32.4
PSO017G4261 Papaver somniferum HOM05D006707 ORTHO05D008243 5.8e-11 73.6 44 75.0
Zm00001eb111370 Zea mays HOM05D006707 ORTHO05D008243 1.1e-09 69.3 216 29.2
arahy.Tifrunner.gnm1.ann1.55ENF0 Arachis hypogaea HOM05D006707 ORTHO05D008243 3.2e-09 67.8 142 32.4
Rhsim03G0043000 Rhododendron simsii HOM05D006707 ORTHO05D008243 3.2e-09 67.8 56 57.1
ECA246G2801 Erigeron canadensis HOM05D006707 ORTHO05D008243 1.2e-08 65.9 63 52.4
FAN13G2143 Fragaria x ananassa HOM05D006707 ORTHO05D008243 3.5e-08 64.3 46 67.4
QL11p014441 Quercus lobata HOM05D006707 ORTHO05D008243 2.5e-06 58.2 46 63.0
HanXRQChr10g0277831 Helianthus annuus HOM05D006707 ORTHO05D008243 4.3e-06 57.4 162 25.9


User provided reference genes

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