Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.BG.159.p Acer truncatum HOM05D004715 ORTHO05D005644 5.2e-78 294.3 146 100.0
Atru.chr1.3057 Acer truncatum HOM05D004715 ORTHO05D005644 8.4e-76 287.0 146 97.9
Ciclev10026407m.g Citrus clementina HOM05D004715 ORTHO05D005644 6.6e-73 277.3 146 93.8
Ciclev10027256m.g Citrus clementina HOM05D004715 ORTHO05D005644 6.6e-73 277.3 146 93.8
Manes.11G053500 Manihot esculenta HOM05D004715 ORTHO05D005644 7.6e-61 237.3 146 78.1
AL2G41320 Arabidopsis lyrata HOM05D004715 ORTHO05D005644 1.1e-59 233.4 146 76.7
Potri.006G142300 Populus trichocarpa HOM05D004715 ORTHO05D005644 2.4e-59 232.3 146 76.7
AT1G80190 Arabidopsis thaliana HOM05D004715 ORTHO05D005644 3.2e-59 231.9 146 76.0
Aa31LG4G470 Aethionema arabicum HOM05D004715 ORTHO05D005644 7.1e-59 230.7 146 75.3
Thhalv10019155m.g Eutrema salsugineum HOM05D004715 ORTHO05D005644 7.1e-59 230.7 146 76.0
Gohir.D10G075500 Gossypium hirsutum HOM05D004715 ORTHO05D005644 1.6e-58 229.6 146 76.7
Gorai.011G081500 Gossypium raimondii HOM05D004715 ORTHO05D005644 1.6e-58 229.6 146 76.7
THA.LOC104812498 Tarenaya hassleriana HOM05D004715 ORTHO05D005644 2.7e-58 228.8 146 74.7
Aa31LG1G19480 Aethionema arabicum HOM05D004715 ORTHO05D005644 4.6e-58 228.0 146 73.3
Carub.0002s2733 Capsella rubella HOM05D004715 ORTHO05D005644 4.6e-58 228.0 146 74.7
Carub.0005s0104 Capsella rubella HOM05D004715 ORTHO05D005644 4.6e-58 228.0 146 74.7
Duzib160G0636 Durio zibethinus HOM05D004715 ORTHO05D005644 1.3e-57 226.5 146 76.0
CARHR074290 Cardamine hirsuta HOM05D004715 ORTHO05D005644 3.0e-57 225.3 146 72.6
Cpa.g.sc10.228 Carica papaya HOM05D004715 ORTHO05D005644 3.0e-57 225.3 146 74.7
Thecc.06G070800 Theobroma cacao HOM05D004715 ORTHO05D005644 3.0e-57 225.3 146 76.0
Sp5g35610 Schrenkiella parvula HOM05D004715 ORTHO05D005644 6.7e-57 224.2 146 73.3
Gohir.A05G125400 Gossypium hirsutum HOM05D004715 ORTHO05D005644 1.1e-56 223.4 146 74.7
Gorai.009G130400 Gossypium raimondii HOM05D004715 ORTHO05D005644 1.1e-56 223.4 146 74.7
BolC2t09760H Brassica oleracea HOM05D004715 ORTHO05D005644 2.5e-56 222.2 146 71.9
Prupe.3G081400 Prunus persica HOM05D004715 ORTHO05D005644 4.3e-56 221.5 145 75.9
arahy.Tifrunner.gnm1.ann1.GHMT6A Arachis hypogaea HOM05D004715 ORTHO05D005644 7.4e-56 220.7 146 73.3
Gohir.D05G126400 Gossypium hirsutum HOM05D004715 ORTHO05D005644 7.4e-56 220.7 146 74.0
QL05p027948 Quercus lobata HOM05D004715 ORTHO05D005644 7.4e-56 220.7 146 74.7
arahy.Tifrunner.gnm1.ann1.EP2671 Arachis hypogaea HOM05D004715 ORTHO05D005644 1.3e-55 219.9 146 73.3
Phvul.005G004200 Phaseolus vulgaris HOM05D004715 ORTHO05D005644 2.8e-55 218.8 147 72.8
BcaB05g25289 Brassica carinata HOM05D004715 ORTHO05D005644 8.1e-55 217.2 146 70.5
C02p37490 Brassica napus HOM05D004715 ORTHO05D005644 1.1e-54 216.9 146 71.9
C06p28980 Brassica napus HOM05D004715 ORTHO05D005644 1.4e-54 216.5 146 68.5
Phvul.005G019100 Phaseolus vulgaris HOM05D004715 ORTHO05D005644 1.4e-54 216.5 147 72.8
Aqoxy1G00791 Aquilegia oxysepala HOM05D004715 ORTHO05D005644 1.8e-54 216.1 146 72.6
Lalb_Chr22g0350991 Lupinus albus HOM05D004715 ORTHO05D005644 2.4e-54 215.7 147 71.4
BcaC03g15994 Brassica carinata HOM05D004715 ORTHO05D005644 3.1e-54 215.3 146 71.2
Sed0013432 Sechium edule HOM05D004715 ORTHO05D005644 5.3e-54 214.5 147 71.4
A02p23740 Brassica napus HOM05D004715 ORTHO05D005644 6.9e-54 214.2 146 70.5
BraA02t07366Z Brassica rapa HOM05D004715 ORTHO05D005644 6.9e-54 214.2 146 70.5
BcaB02g07291 Brassica carinata HOM05D004715 ORTHO05D005644 1.2e-53 213.4 146 67.8
ClCG09G002750 Citrullus lanatus HOM05D004715 ORTHO05D005644 1.5e-53 213.0 147 72.1
CsaV3_7G032580 Cucumis sativus L. HOM05D004715 ORTHO05D005644 2.0e-53 212.6 147 72.1
Medtr1g052500 Medicago truncatula HOM05D004715 ORTHO05D005644 2.0e-53 212.6 147 73.5
Cfa001997 Carpinus fangiana HOM05D004715 ORTHO05D005644 2.6e-53 212.2 146 71.9
Medtr3g005080 Medicago truncatula HOM05D004715 ORTHO05D005644 2.6e-53 212.2 147 73.5
VMungo1080G0231 Vigna mungo HOM05D006110 ORTHO05D007774 3.4e-53 211.8 146 72.6
Duzib235G0750 Durio zibethinus HOM05D004715 ORTHO05D005644 4.5e-53 211.5 146 71.9
GSVIVG01017274001 Vitis vinifera HOM05D004715 ORTHO05D005644 4.5e-53 211.5 146 71.2
TAR369G0040 Trochodendron aralioides HOM05D004715 ORTHO05D005644 5.8e-53 211.1 146 71.2
MELO3C023404.2 Cucumis melo HOM05D004715 ORTHO05D005644 1.3e-52 209.9 147 72.1
Sabra06G0111400 Salix brachista HOM05D004715 ORTHO05D005644 1.3e-52 209.9 207 56.0
MD17G1206800 Malus domestica HOM05D004715 ORTHO05D005644 1.7e-52 209.5 145 71.7
TWI18G0840 Tripterygium wilfordii HOM05D004715 ORTHO05D005644 1.7e-52 209.5 146 71.9
CiPaw.01G245000 Carya illinoinensis HOM05D004715 ORTHO05D005644 2.2e-52 209.1 146 69.9
Ca_12943_v3 Cicer arietinum L. HOM05D004715 ORTHO05D005644 2.2e-52 209.1 147 72.1
CANSAT56G4056 Cannabis sativa HOM05D004715 ORTHO05D005644 2.9e-52 208.8 147 70.1
Glyma.04G133700 Glycine max HOM05D004715 ORTHO05D005644 3.8e-52 208.4 147 68.7
TPR.G25532 Trifolium pratense HOM05D004715 ORTHO05D005644 3.8e-52 208.4 145 73.8
BolC6t38064H Brassica oleracea HOM05D004715 ORTHO05D005644 6.4e-52 207.6 146 66.4
TWI12G0849 Tripterygium wilfordii HOM05D004715 ORTHO05D005644 1.1e-51 206.8 146 69.9
BcaC08g45296 Brassica carinata HOM05D004715 ORTHO05D005644 1.4e-51 206.5 146 66.4
Nn7g35903 Nelumbo nucifera HOM05D004715 ORTHO05D005644 4.2e-51 204.9 146 70.5
RcHm_v2.0_Chr2g0123461 Rosa chinensis HOM05D004715 ORTHO05D005644 7.1e-51 204.1 147 69.4
FvH4_1g25440 Fragaria vesca HOM05D004715 ORTHO05D005644 9.3e-51 203.8 147 68.0
FAN19G1260 Fragaria x ananassa HOM05D000191 ORTHO05D005644 9.3e-51 203.8 147 68.0
PSO384G1744 Papaver somniferum HOM05D004715 ORTHO05D005644 1.2e-50 203.4 145 67.6
FAN23G0015 Fragaria x ananassa HOM05D004715 ORTHO05D005644 2.1e-50 202.6 147 67.3
FAN26G3166 Fragaria x ananassa HOM05D004715 ORTHO05D005644 2.7e-50 202.2 147 67.3
DCAR_025488 Daucus carota HOM05D004715 ORTHO05D005644 3.5e-50 201.8 146 68.5
FAN28G2078 Fragaria x ananassa HOM05D004715 ORTHO05D005644 4.6e-50 201.4 147 67.3
Lsat_1_v5_gn_5_132400 Lactuca sativa HOM05D004715 ORTHO05D005644 4.6e-50 201.4 146 68.5
PGR102G1320 Punica granatum HOM05D004715 ORTHO05D005644 4.6e-50 201.4 146 69.2
Lj3g0005798 Lotus japonicus HOM05D004715 ORTHO05D005644 6.0e-50 201.1 147 68.7
RcHm_v2.0_Chr2g0136471 Rosa chinensis HOM05D004715 ORTHO05D005644 6.0e-50 201.1 147 68.0
Eucgr.F02544 Eucalyptus grandis HOM05D004715 ORTHO05D005644 1.0e-49 200.3 146 68.5
PSO339G1448 Papaver somniferum HOM05D004715 ORTHO05D005644 1.8e-49 199.5 145 66.9
AUR62005173 Chenopodium quinoa HOM05D004715 ORTHO05D005644 8.7e-49 197.2 147 68.7
HPP92_025406 Vanilla planifolia HOM05D004715 ORTHO05D005644 8.7e-49 197.2 146 65.1
Hma1.2p1_0317F.1_g123670 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 1.1e-48 196.8 145 69.0
Hma1.2p1_1398F.1_g280822 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 1.1e-48 196.8 145 69.0
Dinv30576 Davidia involucrata HOM05D004715 ORTHO05D005644 2.5e-48 195.7 145 68.3
Glyma.07G105000 Glycine max HOM05D004715 ORTHO05D005644 2.5e-48 195.7 147 66.7
Lj5A69G39 Lonicera japonica HOM05D004715 ORTHO05D005644 3.3e-48 195.3 146 69.9
AUR62000794 Chenopodium quinoa HOM05D004715 ORTHO05D005644 4.3e-48 194.9 147 68.0
Actinidia01764 Actinidia chinensis HOM05D004715 ORTHO05D005644 2.8e-47 192.2 143 67.8
Hma1.2p1_1398F.1_g280805 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 2.8e-47 192.2 145 67.6
Oeu063807.1 Olea europaea HOM05D004715 ORTHO05D005644 2.8e-47 192.2 146 65.8
HanXRQChr15g0463891 Helianthus annuus HOM05D004715 ORTHO05D005644 3.7e-47 191.8 146 66.4
Oeu052278.1 Olea europaea HOM05D004715 ORTHO05D005644 3.7e-47 191.8 146 65.8
Rhsim08G0215800 Rhododendron simsii HOM05D004715 ORTHO05D005644 1.4e-46 189.9 142 66.9
Os05g0453900 Oryza sativa ssp. japonica HOM05D004715 ORTHO05D005644 2.4e-46 189.1 146 62.3
ATR0210G050 Amborella trichopoda HOM05D004715 ORTHO05D005644 4.0e-46 188.3 145 63.4
Hund21699 Selenicereus undatus HOM05D004715 ORTHO05D005644 6.9e-46 187.6 147 66.7
SEGI_27675 Sequoiadendron giganteum HOM05D004715 ORTHO05D005644 6.9e-46 187.6 145 60.7
EL10Ac4g09393 Beta vulgaris HOM05D004715 ORTHO05D005644 9.0e-46 187.2 147 66.0
Sc14g0006620 Simmondsia chinensis HOM05D004715 ORTHO05D005644 1.5e-45 186.4 147 65.3
CDE02G3949 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 2.6e-45 185.7 146 63.7
CSS0021095 Camellia sinensis var. sinensis HOM05D004715 ORTHO05D005644 5.8e-45 184.5 142 66.9
Ah.06g189580 Amaranthus hybridus HOM05D004715 ORTHO05D005644 7.6e-45 184.1 147 64.6
SGA_v2.0_scaffold5G02664 Striga asiatica HOM05D004715 ORTHO05D005644 8.4e-44 180.6 146 61.6
MSTRG.11119 Avicennia marina HOM05D004715 ORTHO05D005644 1.2e-42 176.8 146 61.0
vmacro18968 Vaccinium macrocarpon HOM05D004715 ORTHO05D005644 1.6e-42 176.4 195 51.8
SalBow2G3045 Salvia bowleyana HOM05D004715 ORTHO05D005644 3.5e-42 175.3 146 60.3
Cc04_g04100 Coffea canephora HOM05D004715 ORTHO05D005644 7.9e-42 174.1 131 67.9
Migut.I00797 Erythranthe guttata HOM05D004715 ORTHO05D005644 7.9e-42 174.1 146 60.3
Nitab4.5_0006709g0030 Nicotiana tabacum HOM05D004715 ORTHO05D005644 1.0e-41 173.7 133 66.2
Nitab4.5_0004281g0110 Nicotiana tabacum HOM05D004715 ORTHO05D005644 1.8e-41 172.9 133 65.4
CAN.G1830.13 Capsicum annuum HOM05D004715 ORTHO05D005644 8.7e-41 170.6 133 63.9
PGSC0003DMG403012981 Solanum tuberosum HOM05D004715 ORTHO05D005644 8.7e-41 170.6 130 65.4
SGA_v2.0_scaffold5G02667 Striga asiatica HOM05D005082 ORTHO05D006474 8.7e-41 170.6 157 56.7
Solyc09g008630.3 Solanum lycopersicum HOM05D004715 ORTHO05D005644 1.1e-40 170.2 130 65.4
Sopen09g003430 Solanum pennellii HOM05D004715 ORTHO05D005644 1.9e-40 169.5 130 64.6
AagrBONN_evm.TU.Sc2ySwM_368.872 Anthoceros agrestis HOM05D004715 ORTHO05D005644 3.3e-40 168.7 146 55.5
Peaxi162Scf00125g00003 Petunia axillaris HOM05D004715 ORTHO05D005644 4.8e-39 164.9 143 60.8
SMO347G0348 Selaginella moellendorffii HOM05D004715 ORTHO05D005644 4.8e-39 164.9 145 54.5
COL.COLO4_12914 Corchorus olitorius HOM05D004715 ORTHO05D005644 6.3e-39 164.5 111 71.2
ECA234G4462 Erigeron canadensis HOM05D004715 ORTHO05D005644 4.1e-38 161.8 144 55.6
unitig_0.g2002 Utricularia gibba HOM05D004715 ORTHO05D005644 1.2e-37 160.2 144 54.2
BraA07t30299Z Brassica rapa HOM05D004715 ORTHO05D005644 3.8e-36 155.2 111 64.9
Haze_16520 Corylus avellana HOM05D004715 ORTHO05D005644 5.0e-36 154.8 146 56.8
Gohir.A10G076000 Gossypium hirsutum HOM05D004715 ORTHO05D005644 5.0e-36 154.8 107 71.0
A07p26560 Brassica napus HOM05D004715 ORTHO05D005644 3.2e-35 152.1 103 69.9
Peaxi162Scf01195g00016 Petunia axillaris HOM05D004715 ORTHO05D005644 4.2e-35 151.8 176 49.4
TPR.G1414 Trifolium pratense HOM05D004715 ORTHO05D005644 2.3e-33 146.0 104 69.2
Pp3c20_16980 Physcomitrium patens HOM05D004715 ORTHO05D005644 3.9e-33 145.2 146 50.7
Pp3c20_17250 Physcomitrium patens HOM05D004715 ORTHO05D005644 3.9e-33 145.2 146 50.7
MBI14_g02860_MAGBIO Magnolia biondii HOM05D004715 ORTHO05D005644 3.3e-32 142.1 111 63.1
VMungo0331G0566 Vigna mungo HOM05D004715 ORTHO05D005644 3.3e-32 142.1 129 62.8
Cc00_g27240 Coffea canephora HOM05D004715 ORTHO05D005644 1.3e-28 130.2 100 68.0
TPR.G1424 Trifolium pratense HOM05D004715 ORTHO05D005644 1.7e-28 129.8 139 57.6
TPR.G18869 Trifolium pratense HOM05D004715 ORTHO05D005644 1.7e-28 129.8 90 71.1
CBR_g20274 Chara braunii HOM05D006908 ORTHO05D008662 3.8e-28 128.6 145 46.9
Psat5g222760 Pisum sativum HOM05D004715 ORTHO05D005644 3.8e-28 128.6 100 65.0
Zm00001eb065860 Zea mays HOM05D004715 ORTHO05D005644 6.5e-28 127.9 107 57.9
Rhsim03G0103800 Rhododendron simsii HOM05D004715 ORTHO05D005644 1.9e-27 126.3 107 59.8
Rhsim03G0101400 Rhododendron simsii HOM05D004715 ORTHO05D005644 4.7e-26 121.7 107 57.9
CDE09G0914 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 5.1e-25 118.2 117 53.0
TPR.G30851 Trifolium pratense HOM05D004715 ORTHO05D005644 2.2e-23 112.8 73 78.1
Mapoly0008s0246 Marchantia polymorpha HOM05D004715 ORTHO05D005644 1.4e-22 110.2 127 43.3
TPR.G13435 Trifolium pratense HOM05D004715 ORTHO05D005644 1.4e-22 110.2 96 62.5
CDE09G0533 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 1.0e-20 104.0 75 66.7
Medtr7g052330 Medicago truncatula HOM05D004715 ORTHO05D005644 1.3e-20 103.6 109 52.3
FAN14G0801 Fragaria x ananassa HOM05D004715 ORTHO05D005644 2.9e-20 102.4 147 44.9
MCO12G383 Micromonas commoda HOM05D004715 ORTHO05D005644 2.3e-17 92.8 147 33.3
TAR369G0577 Trochodendron aralioides HOM05D004715 ORTHO05D005644 2.0e-16 89.7 146 38.4
FvH4_6g30230 Fragaria vesca HOM05D004715 ORTHO05D005644 1.6e-13 80.1 50 80.0
Ca_26811_v3 Cicer arietinum L. HOM05D004715 ORTHO05D005644 5.0e-12 75.1 70 57.1
Gohir.A10G075900 Gossypium hirsutum HOM05D004715 ORTHO05D005644 1.5e-11 73.6 39 87.2
MSTRG.22727 Avicennia marina HOM05D004715 ORTHO05D005644 1.9e-11 73.2 69 52.2
TAR623G1252 Trochodendron aralioides HOM05D004715 ORTHO05D005644 7.2e-11 71.2 51 66.7
Hma1.2p1_1398F.1_g280810 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 9.4e-11 70.9 49 69.4
PRCOL_00005608 Prasinoderma coloniale HOM05D004715 ORTHO05D005644 9.4e-11 70.9 151 29.8
HanXRQChr09g0268691 Helianthus annuus HOM05D004715 ORTHO05D005644 1.2e-08 63.9 49 57.1
Cfa026515 Carpinus fangiana HOM05D040851 ORTHO05D024893 2.0e-08 63.2 133 32.3
Cre03.g161050 Chlamydomonas reinhardtii HOM05D004715 ORTHO05D005644 2.6e-08 62.8 98 37.8
Hma1.2p1_1398F.1_g280823 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 2.6e-08 62.8 52 61.5


User provided reference genes

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