Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy7G03810 Aquilegia oxysepala HOM05D004632 ORTHO05D005556 2.9e-261 905.2 662 100.0
Dinv34967 Davidia involucrata HOM05D004632 ORTHO05D005556 2.1e-206 723.0 672 84.2
PSO782G2171 Papaver somniferum HOM05D004632 ORTHO05D005556 1.3e-205 720.3 668 84.1
Nn8g39852 Nelumbo nucifera HOM05D004632 ORTHO05D005556 5.1e-205 718.4 666 85.0
PSO063G4867 Papaver somniferum HOM05D004632 ORTHO05D005556 1.5e-204 716.8 670 83.9
GSVIVG01035887001 Vitis vinifera HOM05D004632 ORTHO05D005556 2.1e-203 713.0 677 83.3
CSS0008139 Camellia sinensis var. sinensis HOM05D004632 ORTHO05D005556 2.6e-201 706.1 669 83.4
Rhsim02G0214000 Rhododendron simsii HOM05D004632 ORTHO05D005556 3.8e-200 702.2 669 84.2
MBI15_g05236_MAGBIO Magnolia biondii HOM05D004632 ORTHO05D005556 1.9e-199 699.9 455 79.8
Prupe.1G392800 Prunus persica HOM05D004632 ORTHO05D005556 4.2e-199 698.7 672 82.4
RcHm_v2.0_Chr6g0299541 Rosa chinensis HOM05D004632 ORTHO05D005556 3.7e-195 685.6 666 82.1
Actinidia22297 Actinidia chinensis HOM05D004632 ORTHO05D005556 1.3e-192 677.2 665 81.4
CiPaw.07G229300 Carya illinoinensis HOM05D004632 ORTHO05D005556 2.2e-192 676.4 678 80.8
FvH4_2g41020 Fragaria vesca HOM05D004632 ORTHO05D005556 2.5e-191 672.9 665 80.6
Cc09_g08590 Coffea canephora HOM05D004632 ORTHO05D005556 4.6e-190 668.7 675 79.6
Ciclev10007613m.g Citrus clementina HOM05D004632 ORTHO05D005556 1.3e-189 667.2 673 81.0
Sed0004025 Sechium edule HOM05D004632 ORTHO05D005556 2.3e-189 666.4 671 80.0
CsaV3_4G036640 Cucumis sativus L. HOM05D004632 ORTHO05D005556 8.7e-189 664.5 671 79.4
MELO3C016968.2 Cucumis melo HOM05D004632 ORTHO05D005556 1.1e-188 664.1 671 79.6
MD00G1143300 Malus domestica HOM05D004632 ORTHO05D005556 5.7e-188 661.8 463 76.0
Phvul.009G087600 Phaseolus vulgaris HOM05D004632 ORTHO05D005556 5.7e-188 661.8 673 79.9
VMungo1309G0882 Vigna mungo HOM05D004632 ORTHO05D005556 5.7e-188 661.8 672 79.8
Lj1g0022186 Lotus japonicus HOM05D004632 ORTHO05D005556 7.4e-188 661.4 667 79.9
FAN20G0152 Fragaria x ananassa HOM05D004632 ORTHO05D005556 1.3e-187 660.6 681 78.6
FAN20G1191 Fragaria x ananassa HOM05D004632 ORTHO05D005556 1.6e-187 660.2 682 78.4
FAN27G1200 Fragaria x ananassa HOM05D004632 ORTHO05D005556 1.1e-186 657.5 455 74.5
Psat5g032640 Pisum sativum HOM05D004632 ORTHO05D005556 1.1e-186 657.5 668 79.0
Lsat_1_v5_gn_6_77900 Lactuca sativa HOM05D004632 ORTHO05D005556 2.4e-186 656.4 460 74.1
ECA240G3507 Erigeron canadensis HOM05D004632 ORTHO05D005556 4.1e-186 655.6 663 79.6
ATR0739G094 Amborella trichopoda HOM05D004632 ORTHO05D005556 6.9e-186 654.8 665 78.5
ClCG05G016370 Citrullus lanatus HOM05D004632 ORTHO05D005556 6.9e-186 654.8 678 78.8
EL10Ac1g00704 Beta vulgaris HOM05D004632 ORTHO05D005556 9.0e-186 654.4 680 76.6
arahy.Tifrunner.gnm1.ann1.8PBG0P Arachis hypogaea HOM05D004632 ORTHO05D005556 1.2e-185 654.1 667 79.5
Glyma.06G062300 Glycine max HOM05D004632 ORTHO05D005556 1.5e-185 653.7 668 79.2
Lsat_1_v5_gn_7_4261 Lactuca sativa HOM05D004632 ORTHO05D005556 2.6e-185 652.9 457 74.2
Cpa.g.sc127.22 Carica papaya HOM05D004632 ORTHO05D005556 3.4e-185 652.5 458 72.5
Duzib168G2284 Durio zibethinus HOM05D004632 ORTHO05D005556 1.0e-184 651.0 661 80.3
CAN.G199.61 Capsicum annuum HOM05D004632 ORTHO05D005556 1.7e-184 650.2 674 78.5
Ca_15774_v3 Cicer arietinum L. HOM05D004632 ORTHO05D005556 5.0e-184 648.7 457 73.7
HanXRQChr03g0084861 Helianthus annuus HOM05D004632 ORTHO05D005556 6.5e-184 648.3 665 79.2
Peaxi162Scf00430g00519 Petunia axillaris HOM05D004632 ORTHO05D005556 1.1e-183 647.5 672 78.7
Atru.chr7.2537 Acer truncatum HOM05D004632 ORTHO05D005556 1.9e-183 646.7 678 78.5
Lalb_Chr23g0268241 Lupinus albus HOM05D004632 ORTHO05D005556 1.9e-183 646.7 455 74.3
arahy.Tifrunner.gnm1.ann1.21LKMJ Arachis hypogaea HOM05D004632 ORTHO05D005556 2.5e-183 646.4 455 73.8
Medtr3g106080 Medicago truncatula HOM05D004632 ORTHO05D005556 3.2e-183 646.0 670 78.8
Potri.018G020200 Populus trichocarpa HOM05D004632 ORTHO05D005556 5.5e-183 645.2 676 78.0
Glyma.04G061600 Glycine max HOM05D004632 ORTHO05D005556 9.4e-183 644.4 670 79.3
Manes.16G128700 Manihot esculenta HOM05D004632 ORTHO05D005556 2.1e-182 643.3 668 79.2
Potri.006G263400 Populus trichocarpa HOM05D004632 ORTHO05D005556 2.7e-182 642.9 676 78.0
DCAR_015265 Daucus carota HOM05D004632 ORTHO05D005556 3.6e-182 642.5 459 71.7
Sopen06g024220 Solanum pennellii HOM05D004632 ORTHO05D005556 3.9e-181 639.0 679 76.9
TWI32G0830 Tripterygium wilfordii HOM05D004632 ORTHO05D005556 1.5e-180 637.1 677 77.3
TPR.G1835 Trifolium pratense HOM05D004632 ORTHO05D005556 7.4e-180 634.8 670 78.1
Solyc06g065700.3 Solanum lycopersicum HOM05D004632 ORTHO05D005556 9.7e-180 634.4 466 70.2
PGR042G1415 Punica granatum HOM05D004632 ORTHO05D005556 1.3e-179 634.0 675 78.2
BcaB04g19812 Brassica carinata HOM05D004632 ORTHO05D005556 2.2e-179 633.3 669 77.1
Sabra06G0205900 Salix brachista HOM05D004632 ORTHO05D005556 4.8e-179 632.1 672 77.8
HPP92_014401 Vanilla planifolia HOM05D004632 ORTHO05D005556 1.1e-178 630.9 667 78.0
MSTRG.9370 Avicennia marina HOM05D004632 ORTHO05D005556 1.5e-177 627.1 673 76.8
A09p06280 Brassica napus HOM05D004632 ORTHO05D005556 5.9e-177 625.2 667 77.5
Gohir.A05G058900 Gossypium hirsutum HOM05D004632 ORTHO05D005556 7.7e-177 624.8 445 73.3
BraA09t36273Z Brassica rapa HOM05D004632 ORTHO05D005556 1.7e-176 623.6 667 77.4
BolC9t53613H Brassica oleracea HOM05D004632 ORTHO05D005556 3.8e-176 622.5 667 77.1
Migut.N00603 Erythranthe guttata HOM05D004632 ORTHO05D005556 2.5e-175 619.8 458 70.1
Ah.05g177560 Amaranthus hybridus HOM05D004632 ORTHO05D005556 5.5e-175 618.6 476 70.4
C09p06950 Brassica napus HOM05D004632 ORTHO05D005556 1.0e-173 614.4 667 76.8
BcaC04g23574 Brassica carinata HOM05D004632 ORTHO05D005556 1.8e-173 613.6 667 76.8
Gorai.001G037500 Gossypium raimondii HOM05D004632 ORTHO05D005556 2.2e-171 606.7 660 78.3
BolC2t12041H Brassica oleracea HOM05D004632 ORTHO05D005556 1.1e-170 604.4 669 75.6
Lj7A732T26 Lonicera japonica HOM05D004632 ORTHO05D005556 1.8e-170 603.6 653 74.4
Gohir.D07G035600 Gossypium hirsutum HOM05D004632 ORTHO05D005556 2.4e-170 603.2 661 77.9
Gohir.A07G031900 Gossypium hirsutum HOM05D004632 ORTHO05D005556 5.3e-170 602.1 661 77.8
CDE05G3472 Ceratophyllum demersum HOM05D004632 ORTHO05D005556 2.6e-169 599.7 667 66.0
THA.LOC104814991 Tarenaya hassleriana HOM05D004632 ORTHO05D005556 1.7e-168 597.0 676 74.9
Os06g0649500 Oryza sativa ssp. japonica HOM05D004632 ORTHO05D005556 2.9e-168 596.3 669 76.7
Eucgr.C02661 Eucalyptus grandis HOM05D004632 ORTHO05D005556 8.5e-168 594.7 472 68.2
C02p59830 Brassica napus HOM05D004632 ORTHO05D005556 2.5e-167 593.2 669 74.9
Sp2g22380 Schrenkiella parvula HOM05D004632 ORTHO05D005556 2.5e-167 593.2 667 75.6
SGA_v2.0_scaffold40G15680 Striga asiatica HOM05D004632 ORTHO05D005556 3.2e-167 592.8 708 73.0
AT5G25150 Arabidopsis thaliana HOM05D004632 ORTHO05D005556 1.6e-166 590.5 668 75.7
Thhalv10003767m.g Eutrema salsugineum HOM05D004632 ORTHO05D005556 2.7e-166 589.7 668 75.4
Carub.0006s2297 Capsella rubella HOM05D004632 ORTHO05D005556 2.2e-163 580.1 667 74.5
Nitab4.5_0007182g0050 Nicotiana tabacum HOM05D004632 ORTHO05D005556 8.2e-163 578.2 449 68.2
Phvul.001G042300 Phaseolus vulgaris HOM05D004632 ORTHO05D005556 1.8e-162 577.0 666 74.0
CSS0046974 Camellia sinensis var. sinensis HOM05D004632 ORTHO05D005556 7.0e-162 575.1 617 79.1
VMungo0647G2075 Vigna mungo HOM05D004632 ORTHO05D005556 9.1e-162 574.7 454 65.9
A02p39940 Brassica napus HOM05D004632 ORTHO05D005556 4.5e-161 572.4 670 74.0
BraA02t08956Z Brassica rapa HOM05D004632 ORTHO05D005556 7.7e-161 571.6 670 73.9
MSTRG.4644 Avicennia marina HOM05D004632 ORTHO05D005556 6.5e-160 568.5 459 66.0
CARHR188340 Cardamine hirsuta HOM05D004632 ORTHO05D005556 8.5e-160 568.2 452 66.2
Aa31LG11G4400 Aethionema arabicum HOM05D004632 ORTHO05D005556 1.1e-159 567.8 459 64.9
Glyma.17G222200 Glycine max HOM05D004632 ORTHO05D005556 9.4e-159 564.7 455 65.9
TAR626G1191 Trochodendron aralioides HOM05D004632 ORTHO05D005556 2.0e-156 557.0 566 86.0
Nitab4.5_0003976g0020 Nicotiana tabacum HOM05D004632 ORTHO05D005556 4.4e-156 555.8 728 65.2
Thecc.09G016800 Theobroma cacao HOM05D004632 ORTHO05D005556 7.5e-156 555.1 572 83.9
vmacro11252 Vaccinium macrocarpon HOM05D004632 ORTHO05D005556 2.8e-155 553.1 359 79.4
Haze_21427 Corylus avellana HOM05D004632 ORTHO05D005556 6.3e-155 552.0 459 67.1
Hund27424 Selenicereus undatus HOM05D004632 ORTHO05D005556 1.8e-154 550.4 578 55.7
AUR62013801 Chenopodium quinoa HOM05D004632 ORTHO05D005556 3.1e-154 549.7 614 73.8
AUR62023356 Chenopodium quinoa HOM05D004632 ORTHO05D005556 7.0e-154 548.5 672 69.5
SalBow1G2567 Salvia bowleyana HOM05D004632 ORTHO05D005556 1.1e-151 541.2 388 72.4
BcaB07g29936 Brassica carinata HOM05D004632 ORTHO05D005556 2.0e-148 530.4 451 62.5
AL6G36810 Arabidopsis lyrata HOM05D004632 ORTHO05D005556 1.1e-146 524.6 440 64.3
Zm00001eb388650 Zea mays HOM05D004632 ORTHO05D005556 5.5e-143 512.3 572 79.4
BcaC03g17924 Brassica carinata HOM05D004632 ORTHO05D005556 2.0e-137 493.8 670 69.7
TAR625G0176 Trochodendron aralioides HOM05D004632 ORTHO05D005556 5.6e-135 485.7 351 74.9
Mapoly0009s0169 Marchantia polymorpha HOM05D004632 ORTHO05D005556 4.7e-134 482.6 470 54.5
Pp3c12_23330 Physcomitrium patens HOM05D004632 ORTHO05D005556 1.5e-127 461.1 463 53.3
Oeu061252.3 Olea europaea HOM05D004632 ORTHO05D005556 1.5e-124 451.1 702 64.2
Gohir.D05G060932 Gossypium hirsutum HOM05D004632 ORTHO05D005556 2.1e-118 430.6 415 59.5
MD15G1039100 Malus domestica HOM05D004632 ORTHO05D005556 3.1e-117 426.8 318 72.0
CSS0042581 Camellia sinensis var. sinensis HOM05D004632 ORTHO05D005556 7.6e-116 422.2 292 77.1
SMO118G0104 Selaginella moellendorffii HOM05D004632 ORTHO05D005556 8.3e-115 418.7 396 54.3
Oeu013659.1 Olea europaea HOM05D004632 ORTHO05D005556 9.9e-108 395.2 280 73.9
Actinidia13189 Actinidia chinensis HOM05D004632 ORTHO05D005556 1.2e-92 345.1 661 60.4
Zm00001eb259920 Zea mays HOM05D004632 ORTHO05D005556 1.8e-69 268.1 194 71.6
COL.COLO4_18941 Corchorus olitorius HOM05D004632 ORTHO05D005556 7.7e-68 262.7 348 48.3
SEGI_13945 Sequoiadendron giganteum HOM05D004632 ORTHO05D005556 1.3e-62 245.4 163 73.6
PRCOL_00000651 Prasinoderma coloniale HOM05D004632 ORTHO05D005556 1.8e-61 241.5 465 33.8
CBR_g41144 Chara braunii HOM05D004632 ORTHO05D005556 1.8e-56 224.9 193 54.9
MCO11G306 Micromonas commoda HOM05D004632 ORTHO05D005556 6.7e-56 223.0 480 32.7
Sed0017212 Sechium edule HOM05D004632 ORTHO05D005556 1.5e-55 221.9 572 47.9
MD15G1039000 Malus domestica HOM05D004632 ORTHO05D005556 4.4e-55 220.3 149 76.5
Dinv40981 Davidia involucrata HOM05D004632 ORTHO05D005556 7.4e-55 219.5 275 52.0
MCO11G293 Micromonas commoda HOM05D004632 ORTHO05D005556 4.2e-50 203.8 535 29.7
CDE05G1210 Ceratophyllum demersum HOM05D004632 ORTHO05D005556 5.2e-48 196.8 143 69.9
VMungo1309G1582 Vigna mungo HOM05D004632 ORTHO05D005556 8.8e-48 196.1 209 58.9
SEGI_28232 Sequoiadendron giganteum HOM05D004632 ORTHO05D005556 5.7e-47 193.4 165 61.8
Manes.03G009801 Manihot esculenta HOM05D004632 ORTHO05D005556 1.1e-45 189.1 407 40.3
CBR_g39739 Chara braunii HOM05D004632 ORTHO05D005556 2.6e-39 167.9 293 37.9
CDE05G3588 Ceratophyllum demersum HOM05D004632 ORTHO05D005556 5.7e-39 166.8 130 65.4
AagrBONN_evm.TU.Sc2ySwM_228.3176 Anthoceros agrestis HOM05D003428 ORTHO05D004131 4.8e-38 163.7 148 54.7
PSO541G0014 Papaver somniferum HOM05D004632 ORTHO05D005556 1.6e-36 158.7 114 72.8
Actinidia10511 Actinidia chinensis HOM05D004632 ORTHO05D005556 3.2e-34 151.0 138 60.9
Hma1.2p1_0059F.1_g032640 Hydrangea macrophylla HOM05D004632 ORTHO05D005556 6.1e-25 120.2 294 86.7
Sabra18G0022500 Salix brachista HOM05D004632 ORTHO05D005556 8.0e-25 119.8 282 37.2
Actinidia09762 Actinidia chinensis HOM05D004632 ORTHO05D005556 2.6e-23 114.8 66 84.8
Actinidia10512 Actinidia chinensis HOM05D004632 ORTHO05D005556 4.1e-21 107.5 82 68.3
Cre12.g526950 Chlamydomonas reinhardtii HOM05D004632 ORTHO05D005556 3.5e-20 104.4 524 23.5
Glyma.14G103500 Glycine max HOM05D004632 ORTHO05D005556 3.9e-19 100.9 107 49.5
SEGI_30848 Sequoiadendron giganteum HOM05D004632 ORTHO05D005556 3.3e-18 97.8 71 64.8
Cfa022837 Carpinus fangiana HOM05D004632 ORTHO05D005556 1.2e-17 95.9 490 23.3
SEGI_29407 Sequoiadendron giganteum HOM05D004632 ORTHO05D005556 2.8e-17 94.7 91 54.9
Haze_26425 Corylus avellana HOM05D004632 ORTHO05D005556 5.6e-10 70.5 185 28.6
FAN15G3250 Fragaria x ananassa HOM05D004632 ORTHO05D005556 1.6e-09 68.9 43 76.7
Os07g0205200 Oryza sativa ssp. japonica HOM05D004632 ORTHO05D005556 8.1e-09 66.6 84 45.2
Zm00001eb086350 Zea mays HOM05D008576 ORTHO05D000385 1.1e-08 66.2 49 67.3
Glyma.14G103600 Glycine max HOM05D004632 ORTHO05D005556 1.4e-08 65.9 50 66.0
MD15G1038900 Malus domestica HOM05D004632 ORTHO05D005556 1.8e-08 65.5 52 65.4
Zm00001eb239900 Zea mays HOM05D004632 ORTHO05D005556 1.8e-08 65.5 158 32.9
SEGI_21073 Sequoiadendron giganteum HOM05D004632 ORTHO05D005556 4.0e-08 64.3 50 62.0
Dinv40325 Davidia involucrata HOM05D004632 ORTHO05D005556 2.9e-06 58.2 37 75.7


User provided reference genes

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