Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy7G02848 Aquilegia oxysepala HOM05D004578 ORTHO05D005529 6.3e-246 853.6 413 100.0
TAR625G0669 Trochodendron aralioides HOM05D004578 ORTHO05D005529 1.5e-186 656.4 407 76.4
Nn8g40733 Nelumbo nucifera HOM05D004578 ORTHO05D005529 1.1e-178 630.2 399 75.2
MBI16_g05839_MAGBIO Magnolia biondii HOM05D004578 ORTHO05D005529 1.6e-177 626.3 409 71.4
TAR383G0560 Trochodendron aralioides HOM05D004578 ORTHO05D005529 3.4e-175 618.6 393 72.8
TAR383G1032 Trochodendron aralioides HOM05D004578 ORTHO05D005529 2.2e-174 615.9 393 72.3
PSO170G4894 Papaver somniferum HOM05D004578 ORTHO05D005529 7.9e-172 607.4 401 70.3
PSO063G3790 Papaver somniferum HOM05D004578 ORTHO05D005529 6.7e-171 604.4 407 68.6
Potri.018G008700 Populus trichocarpa HOM05D004578 ORTHO05D005529 1.1e-170 603.6 409 69.9
Sabra18G0013200 Salix brachista HOM05D004578 ORTHO05D005529 2.2e-169 599.4 407 69.5
Sabra18G0015700 Salix brachista HOM05D004578 ORTHO05D005529 2.2e-169 599.4 407 69.5
Dinv04517 Davidia involucrata HOM05D004578 ORTHO05D005529 1.8e-168 596.3 413 69.5
Sabra06G0211200 Salix brachista HOM05D004578 ORTHO05D005529 2.9e-166 589.0 407 67.8
Nitab4.5_0000555g0200 Nicotiana tabacum HOM05D004578 ORTHO05D005529 8.5e-166 587.4 406 68.5
Ciclev10008459m.g Citrus clementina HOM05D004578 ORTHO05D005529 1.4e-165 586.6 406 68.2
Peaxi162Scf00045g01734 Petunia axillaris HOM05D004578 ORTHO05D005529 1.9e-165 586.3 403 68.5
TWI32G0020 Tripterygium wilfordii HOM05D004578 ORTHO05D005529 5.1e-163 578.2 404 67.1
DCAR_000687 Daucus carota HOM05D004578 ORTHO05D005529 6.7e-163 577.8 407 65.6
Gorai.010G121600 Gossypium raimondii HOM05D004578 ORTHO05D005529 4.3e-162 575.1 405 64.9
Manes.16G134500 Manihot esculenta HOM05D004578 ORTHO05D005529 7.4e-162 574.3 404 66.3
QL12p025440 Quercus lobata HOM05D004578 ORTHO05D005529 7.4e-162 574.3 400 67.5
Ciclev10008463m.g Citrus clementina HOM05D004578 ORTHO05D005529 1.3e-161 573.5 407 67.1
Duzib168G2341 Durio zibethinus HOM05D004578 ORTHO05D005529 8.2e-161 570.9 404 66.6
Gohir.D06G107000 Gossypium hirsutum HOM05D004578 ORTHO05D005529 1.8e-160 569.7 403 64.8
MD15G1106400 Malus domestica HOM05D004578 ORTHO05D005529 1.8e-160 569.7 400 66.2
CAN.G673.19 Capsicum annuum HOM05D004578 ORTHO05D005529 4.1e-160 568.5 405 64.7
Thecc.09G008600 Theobroma cacao HOM05D004578 ORTHO05D005529 5.3e-160 568.2 404 65.3
Gohir.A06G104800 Gossypium hirsutum HOM05D004578 ORTHO05D005529 1.5e-159 566.6 404 64.4
Potri.006G272800 Populus trichocarpa HOM05D004578 ORTHO05D005529 2.6e-159 565.8 399 66.9
Eucgr.C04012 Eucalyptus grandis HOM05D004578 ORTHO05D005529 3.4e-159 565.5 404 65.6
MD08G1126500 Malus domestica HOM05D004578 ORTHO05D005529 1.3e-158 563.5 400 65.5
Manes.03G004800 Manihot esculenta HOM05D004578 ORTHO05D005529 1.7e-158 563.1 405 64.0
PGSC0003DMG400026320 Solanum tuberosum HOM05D004578 ORTHO05D005529 3.8e-158 562.0 406 63.1
Cpa.g.sc23.31 Carica papaya HOM05D004578 ORTHO05D005529 6.5e-158 561.2 404 63.4
CiPaw.07G211300 Carya illinoinensis HOM05D004578 ORTHO05D005529 1.1e-157 560.5 401 67.3
Solyc08g006430.4 Solanum lycopersicum HOM05D004578 ORTHO05D005529 1.1e-157 560.5 403 63.3
Migut.A00428 Erythranthe guttata HOM05D004578 ORTHO05D005529 1.4e-157 560.1 409 63.8
Lj7P748T39 Lonicera japonica HOM05D004578 ORTHO05D005529 1.4e-157 560.1 388 66.5
Prupe.1G458600 Prunus persica HOM05D004578 ORTHO05D005529 1.4e-157 560.1 400 65.2
Cc08_g06480 Coffea canephora HOM05D004578 ORTHO05D005529 1.9e-157 559.7 407 63.6
COL.COLO4_19019 Corchorus olitorius HOM05D004578 ORTHO05D005529 1.9e-157 559.7 400 65.2
Sopen08g002370 Solanum pennellii HOM05D004578 ORTHO05D005529 2.5e-157 559.3 406 62.3
CSS0030954 Camellia sinensis var. sinensis HOM05D004578 ORTHO05D005529 9.4e-157 557.4 407 63.9
MBI13_g34048_MAGBIO Magnolia biondii HOM05D004578 ORTHO05D005529 9.4e-157 557.4 401 65.8
BcaC02g08438 Brassica carinata HOM05D004578 ORTHO05D005529 3.6e-156 555.4 407 65.1
C04p54190 Brassica napus HOM05D004578 ORTHO05D005529 3.6e-156 555.4 407 65.1
CANSAT25G1430 Cannabis sativa HOM05D004578 ORTHO05D005529 4.7e-156 555.1 400 64.5
FAN15G2443 Fragaria x ananassa HOM05D004578 ORTHO05D005529 7.9e-156 554.3 401 64.8
Nitab4.5_0004131g0050 Nicotiana tabacum HOM05D004578 ORTHO05D005529 7.9e-156 554.3 387 66.4
BolC4t26970H Brassica oleracea HOM05D004578 ORTHO05D005529 1.0e-155 553.9 407 64.9
Atru.chr7.2661 Acer truncatum HOM05D004578 ORTHO05D005529 1.4e-155 553.5 410 65.6
FvH4_2g36660 Fragaria vesca HOM05D004578 ORTHO05D005529 1.8e-155 553.1 401 64.6
QL12p025516 Quercus lobata HOM05D004578 ORTHO05D005529 1.8e-155 553.1 399 64.9
BraA04t17495Z Brassica rapa HOM05D004578 ORTHO05D005529 2.3e-155 552.7 407 64.9
Haze_21761 Corylus avellana HOM05D004578 ORTHO05D005529 2.3e-155 552.7 401 66.1
FAN27G0985 Fragaria x ananassa HOM05D004578 ORTHO05D005529 2.3e-155 552.7 401 64.3
ClCG05G026450 Citrullus lanatus HOM05D004578 ORTHO05D005529 3.0e-155 552.4 404 64.4
Actinidia06432 Actinidia chinensis HOM05D004578 ORTHO05D005529 3.9e-155 552.0 421 63.4
A04p18950 Brassica napus HOM05D004578 ORTHO05D005529 5.1e-155 551.6 407 64.6
Cfa013287 Carpinus fangiana HOM05D004578 ORTHO05D005529 5.1e-155 551.6 401 65.3
FAN20G1103 Fragaria x ananassa HOM05D004578 ORTHO05D005529 2.0e-154 549.7 401 63.6
Carub.0004s0400 Capsella rubella HOM05D004578 ORTHO05D005529 3.3e-154 548.9 408 64.5
Prupe.1G458900 Prunus persica HOM05D004578 ORTHO05D005529 3.3e-154 548.9 407 64.4
BcaB06g27986 Brassica carinata HOM05D004578 ORTHO05D005529 5.7e-154 548.1 409 64.3
CARHR117360 Cardamine hirsuta HOM05D004578 ORTHO05D005529 7.4e-154 547.7 409 63.6
AL4G15160 Arabidopsis lyrata HOM05D004578 ORTHO05D005529 1.3e-153 547.0 407 64.6
vmacro18918 Vaccinium macrocarpon HOM05D004578 ORTHO05D005529 2.2e-153 546.2 407 63.1
Sp4g03570 Schrenkiella parvula HOM05D004578 ORTHO05D005529 3.7e-153 545.4 408 64.0
THA.LOC104819936 Tarenaya hassleriana HOM05D004578 ORTHO05D005529 8.2e-153 544.3 408 63.2
Cfa013284 Carpinus fangiana HOM05D004578 ORTHO05D005529 1.4e-152 543.5 401 64.3
AT2G24580 Arabidopsis thaliana HOM05D004578 ORTHO05D005529 3.1e-152 542.3 408 63.7
CiPaw.08G020700 Carya illinoinensis HOM05D004578 ORTHO05D005529 2.2e-150 536.2 400 63.5
CsaV3_3G047160 Cucumis sativus L. HOM05D004578 ORTHO05D005529 3.8e-150 535.4 407 60.9
PGR044G1507 Punica granatum HOM05D004578 ORTHO05D005529 3.8e-150 535.4 406 62.6
CDE02G4459 Ceratophyllum demersum HOM05D004578 ORTHO05D005529 5.0e-150 535.0 391 63.9
MELO3C003620.2 Cucumis melo HOM05D004578 ORTHO05D005529 5.0e-150 535.0 410 60.5
Thhalv10000150m.g Eutrema salsugineum HOM05D004578 ORTHO05D005529 5.0e-150 535.0 409 62.1
Aa31sc160G30 Aethionema arabicum HOM05D004578 ORTHO05D005529 6.5e-150 534.6 406 62.6
AUR62020290 Chenopodium quinoa HOM05D004578 ORTHO05D005529 1.5e-149 533.5 402 61.4
EL10Ac2g02417 Beta vulgaris HOM05D004578 ORTHO05D005529 1.9e-149 533.1 403 60.0
MSTRG.25795 Avicennia marina HOM05D004578 ORTHO05D005529 1.6e-148 530.0 408 61.3
AUR62037713 Chenopodium quinoa HOM05D004578 ORTHO05D005529 4.7e-148 528.5 402 60.7
Aa31sc715G30 Aethionema arabicum HOM05D004578 ORTHO05D005529 6.1e-148 528.1 400 62.5
SalBow4G0906 Salvia bowleyana HOM05D004578 ORTHO05D005529 6.1e-148 528.1 402 60.4
Hund13109 Selenicereus undatus HOM05D004578 ORTHO05D005529 2.3e-147 526.2 407 59.7
Cc00_g13120 Coffea canephora HOM05D004578 ORTHO05D005529 8.8e-147 524.2 403 60.5
Sed0023873 Sechium edule HOM05D004578 ORTHO05D005529 8.8e-147 524.2 409 61.1
SGA_v2.0_scaffold193G40672 Striga asiatica HOM05D004578 ORTHO05D005529 1.5e-146 523.5 407 59.2
Rhsim10G0084800 Rhododendron simsii HOM05D004578 ORTHO05D005529 5.7e-146 521.5 390 63.6
Lsat_1_v5_gn_9_4341 Lactuca sativa HOM05D004578 ORTHO05D005529 1.3e-145 520.4 413 60.3
Cfa013283 Carpinus fangiana HOM05D004578 ORTHO05D005529 3.7e-145 518.8 384 63.3
Ah.13g067790 Amaranthus hybridus HOM05D004578 ORTHO05D005529 8.2e-145 517.7 398 59.8
HanXRQChr15g0466441 Helianthus annuus HOM05D004578 ORTHO05D005529 7.0e-144 514.6 413 59.3
Medtr3g108990 Medicago truncatula HOM05D004578 ORTHO05D005529 2.0e-143 513.1 384 60.9
Eucgr.C04014 Eucalyptus grandis HOM05D004578 ORTHO05D005529 7.7e-143 511.1 388 60.8
ATR0626G173 Amborella trichopoda HOM05D004578 ORTHO05D005529 1.3e-142 510.4 413 60.8
ECA247G3559 Erigeron canadensis HOM05D004578 ORTHO05D005529 1.7e-142 510.0 414 58.7
BcaC02g08437 Brassica carinata HOM05D004578 ORTHO05D005529 6.5e-142 508.1 406 60.8
RcHm_v2.0_Chr6g0305131 Rosa chinensis HOM05D004578 ORTHO05D005529 1.1e-141 507.3 400 60.2
Eucgr.C04016 Eucalyptus grandis HOM05D004578 ORTHO05D005529 1.9e-141 506.5 387 60.5
TPR.G12360 Trifolium pratense HOM05D004578 ORTHO05D005529 2.3e-139 499.6 394 58.6
HanXRQChr10g0282951 Helianthus annuus HOM05D004578 ORTHO05D005529 6.8e-139 498.0 414 57.5
Phvul.009G102000 Phaseolus vulgaris HOM05D004578 ORTHO05D005529 6.8e-139 498.0 388 58.2
Medtr3g109010 Medicago truncatula HOM05D004578 ORTHO05D005529 2.6e-138 496.1 392 57.4
VMungo1309G1783 Vigna mungo HOM05D004578 ORTHO05D005529 2.8e-137 492.7 388 57.7
Glyma.04G076300 Glycine max HOM05D004578 ORTHO05D005529 1.8e-136 490.0 387 56.3
Lj1g0024454 Lotus japonicus HOM05D004578 ORTHO05D005529 2.9e-134 482.6 384 56.8
Ca_15651_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 5.0e-134 481.9 383 58.7
Ca_15659_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 5.0e-134 481.9 383 58.7
Sc07g0007360 Simmondsia chinensis HOM05D004578 ORTHO05D005529 6.5e-134 481.5 395 56.2
TPR.G12429 Trifolium pratense HOM05D004578 ORTHO05D005529 1.1e-133 480.7 384 58.9
arahy.Tifrunner.gnm1.ann1.M0AD1K Arachis hypogaea HOM05D004578 ORTHO05D005529 2.5e-133 479.6 392 55.9
arahy.Tifrunner.gnm1.ann1.W2ETIH Arachis hypogaea HOM05D004578 ORTHO05D005529 2.5e-133 479.6 392 56.6
Actinidia22261 Actinidia chinensis HOM05D004578 ORTHO05D005529 5.5e-133 478.4 421 57.2
Prupe.1G458800 Prunus persica HOM05D004578 ORTHO05D005529 1.4e-131 473.8 403 58.6
Ca_15652_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 4.0e-131 472.2 377 57.8
Ca_15660_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 4.0e-131 472.2 377 57.8
unitig_32.g11237 Utricularia gibba HOM05D004578 ORTHO05D005529 7.5e-130 468.0 391 56.0
Psat5g024080 Pisum sativum HOM05D004578 ORTHO05D005529 1.7e-126 456.8 388 54.1
SEGI_31206 Sequoiadendron giganteum HOM05D004578 ORTHO05D005529 1.5e-125 453.8 414 53.1
Os09g0498500 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 6.1e-124 448.4 405 53.3
Zm00001eb317190 Zea mays HOM05D004578 ORTHO05D005529 6.1e-124 448.4 401 53.9
Zm00001eb127180 Zea mays HOM05D004578 ORTHO05D005529 1.1e-117 427.6 398 52.8
SEGI_11947 Sequoiadendron giganteum HOM05D004578 ORTHO05D005529 4.3e-117 425.6 412 50.7
Lalb_Chr11g0064181 Lupinus albus HOM05D004578 ORTHO05D005529 5.6e-117 425.2 388 51.3
Os12g0543600 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 8.9e-115 417.9 378 54.0
Zm00001eb340420 Zea mays HOM05D004578 ORTHO05D005529 1.9e-112 410.2 392 52.6
Os01g0316100 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 1.2e-111 407.5 399 51.6
Mapoly0152s0014 Marchantia polymorpha HOM05D004578 ORTHO05D005529 1.5e-109 400.6 403 49.1
Pp3c9_3640 Physcomitrium patens HOM05D004578 ORTHO05D005529 4.6e-103 379.0 410 47.6
Zm00001eb140430 Zea mays HOM05D004578 ORTHO05D005529 7.8e-103 378.3 406 49.5
SMO115G0125 Selaginella moellendorffii HOM05D004578 ORTHO05D005529 1.7e-97 360.5 404 45.3
AagrBONN_evm.TU.Sc2ySwM_368.3376 Anthoceros agrestis HOM05D004578 ORTHO05D005529 3.6e-92 342.8 398 45.5
Gohir.D06G106866 Gossypium hirsutum HOM05D004578 ORTHO05D005529 3.6e-92 342.8 404 46.5
GSVIVG01033177001 Vitis vinifera HOM05D004578 ORTHO05D005529 3.8e-89 332.8 404 45.0
HPP92_017393 Vanilla planifolia HOM05D004578 ORTHO05D005529 4.2e-88 329.3 395 46.8
Oeu008773.1 Olea europaea HOM05D004578 ORTHO05D005529 5.1e-86 322.4 397 46.3
Oeu018556.1 Olea europaea HOM05D004578 ORTHO05D005529 5.8e-82 308.9 407 42.3
Gorai.010G121400 Gossypium raimondii HOM05D004578 ORTHO05D005529 2.1e-79 300.4 404 40.6
Hma1.2p1_1588F.1_g292320 Hydrangea macrophylla HOM05D004578 ORTHO05D005529 5.1e-78 295.8 406 43.3
Psat5g025320 Pisum sativum HOM05D004578 ORTHO05D005529 7.4e-77 292.0 254 54.7
unitig_32.g11239 Utricularia gibba HOM05D004578 ORTHO05D005529 3.2e-64 250.0 186 61.3
Cfa013285 Carpinus fangiana HOM05D004578 ORTHO05D005529 9.3e-64 248.4 228 54.4
Lalb_Chr23g0269171 Lupinus albus HOM05D004578 ORTHO05D005529 1.3e-54 218.0 156 60.9
PRCOL_00000645 Prasinoderma coloniale HOM05D004578 ORTHO05D005529 1.3e-54 218.0 435 32.0
HanXRQChr10g0282961 Helianthus annuus HOM05D004578 ORTHO05D005529 2.0e-42 177.6 155 56.1
Ca_28680_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 1.2e-34 151.8 390 28.5
Actinidia22262 Actinidia chinensis HOM05D004578 ORTHO05D005529 1.5e-32 144.8 319 31.7
Cc08_g06580 Coffea canephora HOM05D004578 ORTHO05D005529 3.0e-30 137.1 113 56.6
unitig_32.g11238 Utricularia gibba HOM05D004578 ORTHO05D005529 2.0e-29 134.4 105 63.8
TPR.G12332 Trifolium pratense HOM05D004578 ORTHO05D005529 4.7e-23 113.2 79 64.6
Cre12.g493500 Chlamydomonas reinhardtii HOM05D004578 ORTHO05D005529 1.2e-21 108.6 405 26.4
COL.COLO4_30024 Corchorus olitorius HOM05D004578 ORTHO05D005529 5.9e-10 69.7 40 77.5
Psat2g052560 Pisum sativum HOM05D004790 ORTHO05D005678 4.3e-08 63.5 47 51.1
BcaC05g29844 Brassica carinata HOM05D005694 ORTHO05D007402 1.2e-07 62.0 405 24.2
BolC5t34672H Brassica oleracea HOM05D005694 ORTHO05D007402 1.2e-07 62.0 405 24.2
Aa31LG1G15820 Aethionema arabicum HOM05D005694 ORTHO05D007402 3.0e-06 57.4 392 23.7
Sp2g29370 Schrenkiella parvula HOM05D005694 ORTHO05D007402 4.0e-06 57.0 407 24.8
C05p60220 Brassica napus HOM05D005694 ORTHO05D007402 5.2e-06 56.6 429 23.5


User provided reference genes

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