Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy7G02178 Aquilegia oxysepala HOM05D003776 ORTHO05D004459 0.0e+00 3624.3 1867 100.0
Aqoxy3G01756 Aquilegia oxysepala HOM05D003776 ORTHO05D004459 0.0e+00 3477.6 1867 95.9
TAR625G0211 Trochodendron aralioides HOM05D003776 ORTHO05D004459 0.0e+00 2881.7 1892 78.4
Nn8g39448 Nelumbo nucifera HOM05D003776 ORTHO05D004459 0.0e+00 2834.7 1892 76.6
GSVIVG01015528001 Vitis vinifera HOM05D003776 ORTHO05D004459 0.0e+00 2739.9 1889 74.2
Atru.chr7.1164 Acer truncatum HOM05D003776 ORTHO05D004459 0.0e+00 2677.1 1889 72.4
Thecc.09G126200 Theobroma cacao HOM05D003776 ORTHO05D004459 0.0e+00 2674.8 1889 72.3
Cfa003371 Carpinus fangiana HOM05D003776 ORTHO05D004459 0.0e+00 2665.6 1890 72.5
PSO455G0084 Papaver somniferum HOM05D003776 ORTHO05D004459 0.0e+00 2658.6 1895 72.4
PSO170G4267 Papaver somniferum HOM05D003776 ORTHO05D004459 0.0e+00 2655.9 1890 72.5
Prupe.7G242500 Prunus persica HOM05D003776 ORTHO05D004459 0.0e+00 2649.4 1888 71.6
MD02G1032900 Malus domestica HOM05D003776 ORTHO05D004459 0.0e+00 2648.2 1884 71.7
Rhsim03G0247900 Rhododendron simsii HOM05D003776 ORTHO05D004459 0.0e+00 2642.8 1917 71.2
Dinv36529 Davidia involucrata HOM05D003776 ORTHO05D004459 0.0e+00 2635.9 1905 72.1
Manes.05G119700 Manihot esculenta HOM05D003776 ORTHO05D004459 0.0e+00 2599.7 1890 70.6
CANSAT11G0130 Cannabis sativa HOM05D003776 ORTHO05D004459 0.0e+00 2594.3 1887 70.4
vmacro06129 Vaccinium macrocarpon HOM05D003776 ORTHO05D004459 0.0e+00 2588.5 1948 69.3
Potri.006G119600 Populus trichocarpa HOM05D003776 ORTHO05D004459 0.0e+00 2579.7 1891 70.1
FvH4_1g03320 Fragaria vesca HOM05D003776 ORTHO05D004459 0.0e+00 2579.3 1887 69.5
RcHm_v2.0_Chr2g0088511 Rosa chinensis HOM05D003776 ORTHO05D004459 0.0e+00 2574.7 1887 69.8
TWI34G1787 Tripterygium wilfordii HOM05D003776 ORTHO05D004459 0.0e+00 2573.5 1889 69.9
FAN26G1438 Fragaria x ananassa HOM05D003776 ORTHO05D004459 0.0e+00 2570.0 1887 69.2
Glyma.06G222100 Glycine max HOM05D003776 ORTHO05D004459 0.0e+00 2561.9 1889 69.1
FAN23G1640 Fragaria x ananassa HOM05D003776 ORTHO05D004459 0.0e+00 2557.7 1885 69.0
Haze_25580 Corylus avellana HOM05D003776 ORTHO05D004459 0.0e+00 2551.5 1923 69.5
Lj3g0001115 Lotus japonicus HOM05D003776 ORTHO05D004459 0.0e+00 2548.9 1891 69.5
Gorai.001G042000 Gossypium raimondii HOM05D003776 ORTHO05D004459 0.0e+00 2545.4 1902 68.7
Eucgr.C04218 Eucalyptus grandis HOM05D003776 ORTHO05D004459 0.0e+00 2541.9 1883 69.5
Medtr7g099880 Medicago truncatula HOM05D003776 ORTHO05D004459 0.0e+00 2536.5 1884 69.4
TPR.G21471 Trifolium pratense HOM05D003776 ORTHO05D004459 0.0e+00 2531.5 1884 69.4
Phvul.009G198200 Phaseolus vulgaris HOM05D003776 ORTHO05D004459 0.0e+00 2530.7 1885 69.1
Lalb_Chr11g0072121 Lupinus albus HOM05D003776 ORTHO05D004459 0.0e+00 2526.9 1901 68.6
FAN28G2120 Fragaria x ananassa HOM05D003776 ORTHO05D004459 0.0e+00 2520.0 1886 68.2
Cc06_g08530 Coffea canephora HOM05D003776 ORTHO05D004459 0.0e+00 2514.6 1891 68.5
Sopen12g002420 Solanum pennellii HOM05D003776 ORTHO05D004459 0.0e+00 2510.3 1893 68.3
Ca_14403_v3 Cicer arietinum L. HOM05D003776 ORTHO05D004459 0.0e+00 2509.2 1888 68.9
Sabra06G0094200 Salix brachista HOM05D003776 ORTHO05D004459 0.0e+00 2503.4 2015 65.4
FAN19G1245 Fragaria x ananassa HOM05D003776 ORTHO05D004459 0.0e+00 2500.3 1893 67.8
Solyc12g006480.2 Solanum lycopersicum HOM05D003776 ORTHO05D004459 0.0e+00 2498.0 1893 68.1
Sc08g0006640 Simmondsia chinensis HOM05D003776 ORTHO05D004459 0.0e+00 2494.2 1890 67.9
PGR102G3028 Punica granatum HOM05D003776 ORTHO05D004459 0.0e+00 2489.5 1885 67.6
Psat1g024680 Pisum sativum HOM05D003776 ORTHO05D004459 0.0e+00 2485.7 1892 67.7
CsaV3_2G002830 Cucumis sativus L. HOM05D003776 ORTHO05D004459 0.0e+00 2479.5 1886 66.8
Duzib168G2222 Durio zibethinus HOM05D003776 ORTHO05D004459 0.0e+00 2471.0 1885 68.2
Sed0006794 Sechium edule HOM05D003776 ORTHO05D004459 0.0e+00 2459.5 1887 66.5
ECA234G1804 Erigeron canadensis HOM05D003776 ORTHO05D004459 0.0e+00 2454.1 1892 67.0
Lsat_1_v5_gn_5_96021 Lactuca sativa HOM05D003776 ORTHO05D004459 0.0e+00 2444.8 1890 66.5
THA.LOC104808989 Tarenaya hassleriana HOM05D003776 ORTHO05D004459 0.0e+00 2441.0 1884 66.0
MSTRG.19598 Avicennia marina HOM05D003776 ORTHO05D004459 0.0e+00 2424.4 1889 66.0
EL10Ac8g18652 Beta vulgaris HOM05D003776 ORTHO05D004459 0.0e+00 2416.3 1900 66.7
HanXRQChr10g0315491 Helianthus annuus HOM05D003776 ORTHO05D004459 0.0e+00 2410.6 1889 66.2
Peaxi162Scf01211g00016 Petunia axillaris HOM05D003776 ORTHO05D004459 0.0e+00 2405.6 1948 65.0
Migut.J01158 Erythranthe guttata HOM05D003776 ORTHO05D004459 0.0e+00 2405.2 1884 65.7
QL02p088328 Quercus lobata HOM05D003776 ORTHO05D004459 0.0e+00 2402.1 1714 72.1
Nitab4.5_0002658g0150 Nicotiana tabacum HOM05D003776 ORTHO05D004459 0.0e+00 2397.5 1906 65.9
DCAR_017818 Daucus carota HOM05D003776 ORTHO05D004459 0.0e+00 2380.5 1952 63.9
Carub.0008s1091 Capsella rubella HOM05D003776 ORTHO05D004459 0.0e+00 2364.3 1882 65.2
AL8G25470 Arabidopsis lyrata HOM05D003776 ORTHO05D004459 0.0e+00 2358.6 1884 65.0
CARHR118630 Cardamine hirsuta HOM05D003776 ORTHO05D004459 0.0e+00 2358.2 1883 65.1
Hund09133 Selenicereus undatus HOM05D003776 ORTHO05D004459 0.0e+00 2355.1 1882 65.5
AT5G51200 Arabidopsis thaliana HOM05D003776 ORTHO05D004459 0.0e+00 2351.2 1884 64.7
AUR62013362 Chenopodium quinoa HOM05D003776 ORTHO05D004459 0.0e+00 2348.9 1881 65.1
Sp4g09050 Schrenkiella parvula HOM05D003776 ORTHO05D004459 0.0e+00 2336.2 1885 64.5
VMungo1309G0107 Vigna mungo HOM05D003776 ORTHO05D004459 0.0e+00 2306.2 2318 55.5
MELO3C004510.2 Cucumis melo HOM05D003776 ORTHO05D004459 0.0e+00 2299.6 2015 60.1
AUR62011127 Chenopodium quinoa HOM05D003776 ORTHO05D004459 0.0e+00 2288.5 1880 63.6
ClCG11G003010 Citrullus lanatus HOM05D003776 ORTHO05D004459 0.0e+00 2285.4 1878 63.4
Thhalv10002339m.g Eutrema salsugineum HOM05D003776 ORTHO05D004459 0.0e+00 2283.4 1884 63.3
BraA07t29494Z Brassica rapa HOM05D003776 ORTHO05D004459 0.0e+00 2271.5 1924 62.3
A07p17720 Brassica napus HOM05D003776 ORTHO05D004459 0.0e+00 2256.9 1889 62.7
Lj7C629G11 Lonicera japonica HOM05D003776 ORTHO05D004459 0.0e+00 2254.2 1925 62.3
C07p25670 Brassica napus HOM05D003776 ORTHO05D004459 0.0e+00 2246.9 1890 62.5
CiPaw.03G244000 Carya illinoinensis HOM05D003776 ORTHO05D004459 0.0e+00 2244.5 1634 70.6
BolC7t43085H Brassica oleracea HOM05D003776 ORTHO05D004459 0.0e+00 2242.2 1891 62.5
Aa31LG5G9110 Aethionema arabicum HOM05D003776 ORTHO05D004459 0.0e+00 2225.7 1888 61.9
Gohir.A07G035800 Gossypium hirsutum HOM05D003776 ORTHO05D004459 0.0e+00 2177.1 1582 69.8
Ciclev10007244m.g Citrus clementina HOM05D003776 ORTHO05D004459 0.0e+00 2075.1 1509 71.4
Gohir.D07G039800 Gossypium hirsutum HOM05D003776 ORTHO05D004459 0.0e+00 2055.0 1473 70.7
ATR0322G072 Amborella trichopoda HOM05D003776 ORTHO05D004459 0.0e+00 1989.9 1581 64.6
arahy.Tifrunner.gnm1.ann1.GK8SHH Arachis hypogaea HOM05D003776 ORTHO05D004459 0.0e+00 1857.0 1450 66.1
Oeu055885.1 Olea europaea HOM05D003776 ORTHO05D004459 0.0e+00 1795.4 1426 65.1
Pp3c4_20350 Physcomitrium patens HOM05D003776 ORTHO05D004459 0.0e+00 1739.9 1913 48.7
Mapoly0052s0095 Marchantia polymorpha HOM05D003776 ORTHO05D004459 0.0e+00 1717.6 1903 48.3
COL.COLO4_35084 Corchorus olitorius HOM05D003776 ORTHO05D004459 0.0e+00 1714.1 1187 72.6
Zm00001eb235620 Zea mays HOM05D003776 ORTHO05D004459 0.0e+00 1658.3 1438 60.8
Nitab4.5_0008846g0010 Nicotiana tabacum HOM05D003776 ORTHO05D004459 0.0e+00 1639.8 1424 61.4
AagrBONN_evm.TU.Sc2ySwM_228.87 Anthoceros agrestis HOM05D003776 ORTHO05D004459 0.0e+00 1635.9 1917 47.1
SMO347G0235 Selaginella moellendorffii HOM05D003776 ORTHO05D004459 0.0e+00 1554.7 1918 44.9
Actinidia26393 Actinidia chinensis HOM05D003776 ORTHO05D004459 0.0e+00 1533.1 1876 49.7
Ah.09g226230 Amaranthus hybridus HOM05D003776 ORTHO05D004459 0.0e+00 1471.1 1201 63.4
Os02g0202250 Oryza sativa ssp. japonica HOM05D003776 ORTHO05D004459 0.0e+00 1396.7 1231 59.7
CBR_g37692 Chara braunii HOM05D003776 ORTHO05D004459 0.0e+00 1321.2 1943 40.2
CDE02G1576 Ceratophyllum demersum HOM05D003776 ORTHO05D004459 0.0e+00 1275.4 1121 61.4
Lalb_Chr08g0234831 Lupinus albus HOM05D003776 ORTHO05D004459 0.0e+00 1226.5 840 71.4
Lalb_Chr08g0234811 Lupinus albus HOM05D003776 ORTHO05D004459 0.0e+00 1213.4 953 67.3
HPP92_008667 Vanilla planifolia HOM05D003776 ORTHO05D004459 0.0e+00 1117.8 1243 50.9
CDE02G1439 Ceratophyllum demersum HOM05D003776 ORTHO05D004459 3.8e-311 1072.4 780 68.5
RcHm_v2.0_Chr2g0152361 Rosa chinensis HOM05D003776 ORTHO05D004459 1.3e-306 1057.4 1619 42.4
RcHm_v2.0_Chr2g0152391 Rosa chinensis HOM05D003776 ORTHO05D004459 8.8e-279 964.9 1619 39.8
unitig_26.g8982 Utricularia gibba HOM05D003776 ORTHO05D004459 2.3e-266 923.7 783 59.0
HPP92_008649 Vanilla planifolia HOM05D003776 ORTHO05D004459 6.6e-266 922.2 771 59.9
Ah.09g226220 Amaranthus hybridus HOM05D003776 ORTHO05D004459 3.2e-236 823.5 696 64.2
Duzib187G1323 Durio zibethinus HOM05D003776 ORTHO05D004459 2.7e-235 820.5 699 62.8
FvH4_6g38790 Fragaria vesca HOM05D003776 ORTHO05D004459 1.2e-222 778.5 1053 44.8
Pp3c23_3420 Physcomitrium patens HOM05D003776 ORTHO05D004459 7.9e-211 739.2 1044 41.2
Pp3c20_13260 Physcomitrium patens HOM05D003776 ORTHO05D004459 5.6e-209 733.0 1042 41.5
SEGI_34338 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 1.3e-205 721.8 698 53.9
CAN.G816.2 Capsicum annuum HOM05D003776 ORTHO05D004459 7.4e-201 706.1 606 61.6
Cpa.g.sc75.31 Carica papaya HOM05D003776 ORTHO05D004459 2.8e-192 677.6 519 67.8
vmacro22117 Vaccinium macrocarpon HOM05D003776 ORTHO05D004459 3.2e-172 610.9 793 47.3
Hma1.2p1_0018F.1_g012430 Hydrangea macrophylla HOM05D003776 ORTHO05D004459 4.0e-154 550.8 488 62.3
Os02g0202300 Oryza sativa ssp. japonica HOM05D003776 ORTHO05D004459 2.9e-128 464.9 399 57.1
Cpa.g.sc75.30 Carica papaya HOM05D003776 ORTHO05D004459 2.2e-112 412.1 413 58.6
arahy.Tifrunner.gnm1.ann1.6DBV70 Arachis hypogaea HOM05D003776 ORTHO05D004459 1.7e-109 402.5 420 56.9
Cpa.g.c32453 Carica papaya HOM05D003776 ORTHO05D004459 2.1e-107 395.6 299 67.9
CiPaw.03G243900 Carya illinoinensis HOM05D003776 ORTHO05D004459 1.9e-100 372.5 230 81.7
Hma1.2p1_2368F.1_g320720 Hydrangea macrophylla HOM05D003776 ORTHO05D004459 4.6e-94 351.3 314 64.3
Hma1.2p1_0018F.1_g012440 Hydrangea macrophylla HOM05D003776 ORTHO05D004459 7.9e-94 350.5 210 82.4
HanXRQChr12g0373951 Helianthus annuus HOM05D003776 ORTHO05D004459 1.1e-90 340.1 329 55.3
Psat0s3979g0040 Pisum sativum HOM05D003776 ORTHO05D004459 3.1e-90 338.6 355 54.6
HPP92_008648 Vanilla planifolia HOM05D003776 ORTHO05D004459 4.5e-89 334.7 359 51.5
HanXRQChr04g0119281 Helianthus annuus HOM05D003776 ORTHO05D004459 2.3e-85 322.4 330 55.2
FAN19G2182 Fragaria x ananassa HOM05D003776 ORTHO05D004459 2.5e-84 318.9 278 59.7
Oeu055886.1 Olea europaea HOM05D003776 ORTHO05D004459 1.9e-79 302.8 297 59.9
Ca_29538_v3 Cicer arietinum L. HOM05D003776 ORTHO05D004459 6.3e-75 287.7 264 62.5
Lsat_1_v5_gn_7_7080 Lactuca sativa HOM05D003776 ORTHO05D004459 2.0e-73 282.7 301 54.2
QL02p088302 Quercus lobata HOM05D003776 ORTHO05D004459 1.9e-71 276.2 176 79.0
SEGI_08250 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 7.9e-62 244.2 182 65.9
SHI03382 Sapria himalayana HOM05D003776 ORTHO05D004459 9.1e-58 230.7 211 59.7
RcHm_v2.0_Chr5g0007291 Rosa chinensis HOM05D003776 ORTHO05D004459 1.6e-54 219.9 331 43.5
Peaxi162Scf00574g00927 Petunia axillaris HOM05D003776 ORTHO05D004459 1.8e-53 216.5 299 44.5
RcHm_v2.0_Chr4g0403131 Rosa chinensis HOM05D003776 ORTHO05D004459 4.0e-53 215.3 228 52.2
RcHm_v2.0_Chr4g0403161 Rosa chinensis HOM05D003776 ORTHO05D004459 4.0e-53 215.3 228 52.2
Zm00001eb121860 Zea mays HOM05D003776 ORTHO05D005656 4.0e-53 215.3 179 65.4
FvH4_6g38782 Fragaria vesca HOM05D003776 ORTHO05D004459 7.7e-49 201.1 382 37.4
Lsat_1_v5_gn_3_39400 Lactuca sativa HOM05D003776 ORTHO05D004459 7.2e-47 194.5 217 53.0
PRCOL_00003394 Prasinoderma coloniale HOM05D003776 ORTHO05D004459 2.1e-46 193.0 1726 22.0
RcHm_v2.0_Chr5g0007331 Rosa chinensis HOM05D003776 ORTHO05D004459 2.2e-43 183.0 400 34.8
Actinidia07427 Actinidia chinensis HOM05D003776 ORTHO05D004459 4.2e-39 168.7 151 64.2
vmacro22115 Vaccinium macrocarpon HOM05D004156 ORTHO05D005259 9.5e-39 167.5 151 59.6
Psat0s1308g0040 Pisum sativum HOM05D002636 ORTHO05D004459 3.6e-38 165.6 121 70.2
Psat7g006280 Pisum sativum HOM05D003776 ORTHO05D004459 2.8e-35 156.0 126 63.5
SEGI_13925 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 6.3e-35 154.8 122 60.7
MCO11G810 Micromonas commoda HOM05D003776 ORTHO05D004459 2.3e-32 146.4 770 21.8
Psat5g250280 Pisum sativum HOM05D003776 ORTHO05D004459 1.1e-31 144.1 132 59.1
ATR0322G028 Amborella trichopoda HOM05D003776 ORTHO05D004459 6.1e-30 138.3 171 51.5
RcHm_v2.0_Chr3g0479611 Rosa chinensis HOM05D003776 ORTHO05D004459 8.9e-29 134.4 98 67.3
Cpa.g.c37328 Carica papaya HOM05D003776 ORTHO05D004459 3.4e-28 132.5 75 85.3
Cpa.g.c42453 Carica papaya HOM05D003776 ORTHO05D004459 1.3e-27 130.6 82 73.2
SHI03385 Sapria himalayana HOM05D003776 ORTHO05D004459 3.2e-26 125.9 117 57.3
Lsat_1_v5_gn_5_62781 Lactuca sativa HOM05D003776 ORTHO05D004459 4.1e-26 125.6 301 30.6
Cre13.g578100 Chlamydomonas reinhardtii HOM05D003776 ORTHO05D004459 1.7e-24 120.2 970 23.2
ECA246G1679 Erigeron canadensis HOM05D003776 ORTHO05D004459 9.5e-23 114.4 147 46.9
HPP92_008668 Vanilla planifolia HOM05D003776 ORTHO05D004459 1.2e-22 114.0 254 33.5
Cpa.g.sc75.37 Carica papaya HOM05D003776 ORTHO05D004459 1.6e-22 113.6 81 71.6
ATR0322G071 Amborella trichopoda HOM05D003776 ORTHO05D004459 3.6e-22 112.5 76 72.4
SEGI_04425 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 1.8e-21 110.2 97 53.6
MD16G1253500 Malus domestica HOM05D003776 ORTHO05D004459 7.0e-18 98.2 106 53.8
RcHm_v2.0_Chr5g0007211 Rosa chinensis HOM05D003776 ORTHO05D004459 1.0e-16 94.4 57 78.9
Peaxi162Scf00062g02012 Petunia axillaris HOM05D003776 ORTHO05D004459 1.1e-15 90.9 96 53.1
Peaxi162Scf00574g00919 Petunia axillaris HOM05D003776 ORTHO05D004459 4.3e-15 89.0 96 52.1
Actinidia07426 Actinidia chinensis HOM05D003776 ORTHO05D004459 1.2e-14 87.4 83 53.0
arahy.Tifrunner.gnm1.ann1.HIW0J1 Arachis hypogaea HOM05D003776 ORTHO05D004459 4.4e-12 79.0 55 69.1
MBI13_g38968_MAGBIO Magnolia biondii HOM05D003776 ORTHO05D004459 5.8e-12 78.6 46 82.6
CAN.G1024.1 Capsicum annuum HOM05D003776 ORTHO05D002238 4.9e-11 75.5 91 47.3
Prupe.1G010000 Prunus persica HOM05D003776 ORTHO05D004459 5.4e-10 72.0 105 51.4
PSO478G0731 Papaver somniferum HOM05D003776 ORTHO05D004459 2.7e-09 69.7 74 55.4
SalBow1G5037 Salvia bowleyana HOM05D001898 ORTHO05D002580 7.8e-09 68.2 37 81.1
CBR_g76107 Chara braunii HOM05D003776 ORTHO05D004459 1.0e-08 67.8 64 46.9
MBI06_g09275_MAGBIO Magnolia biondii HOM05D003776 ORTHO05D004459 5.1e-08 65.5 46 65.2
SEGI_27908 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 8.6e-08 64.7 43 65.1
SEGI_19045 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 2.5e-07 63.2 67 53.7
CAN.G1616.4 Capsicum annuum HOM05D003776 ORTHO05D004459 4.3e-07 62.4 52 61.5
FvH4_1g02070 Fragaria vesca HOM05D000524 ORTHO05D035235 1.2e-06 60.8 46 63.0
RcHm_v2.0_Chr5g0007071 Rosa chinensis HOM05D003776 ORTHO05D004459 1.6e-06 60.5 40 70.0
SalBow8G3232 Salvia bowleyana HOM05D002512 ORTHO05D002660 2.8e-06 59.7 33 78.8


User provided reference genes

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