Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy7G00839 Aquilegia oxysepala HOM05D003586 ORTHO05D004036 0.0e+00 4160.1 2165 100.0
TAR375G0563 Trochodendron aralioides HOM05D003586 ORTHO05D004036 0.0e+00 2530.4 2178 62.4
Nn1g00886 Nelumbo nucifera HOM05D003586 ORTHO05D004036 0.0e+00 2449.5 2182 60.0
PSO675G9104 Papaver somniferum HOM05D003586 ORTHO05D004036 0.0e+00 2278.8 2175 56.6
PSO732G0142 Papaver somniferum HOM05D003586 ORTHO05D004036 0.0e+00 2272.3 2175 56.5
Dinv06595 Davidia involucrata HOM05D003586 ORTHO05D004036 0.0e+00 2255.3 2184 56.2
CSS0040773 Camellia sinensis var. sinensis HOM05D003586 ORTHO05D004036 0.0e+00 2222.6 2187 55.5
Ciclev10004122m.g Citrus clementina HOM05D003586 ORTHO05D004036 0.0e+00 2205.6 2184 55.3
GSVIVG01013976001 Vitis vinifera HOM05D003586 ORTHO05D004036 0.0e+00 2205.6 2196 55.0
Cfa013573 Carpinus fangiana HOM05D003586 ORTHO05D004036 0.0e+00 2180.2 2181 55.1
CSS0004894 Camellia sinensis var. sinensis HOM05D003586 ORTHO05D004036 0.0e+00 2158.3 2187 54.5
Thecc.03G149300 Theobroma cacao HOM05D003586 ORTHO05D004036 0.0e+00 2150.6 2206 54.1
vmacro06834 Vaccinium macrocarpon HOM05D003586 ORTHO05D004036 0.0e+00 2150.2 2205 53.6
QL09p028029 Quercus lobata HOM05D003586 ORTHO05D004036 0.0e+00 2145.5 2229 52.8
TWI23G0434 Tripterygium wilfordii HOM05D003586 ORTHO05D004036 0.0e+00 2114.0 2183 52.7
Rhsim03G0161600 Rhododendron simsii HOM05D003586 ORTHO05D004036 0.0e+00 2109.7 2272 52.3
MD07G1249300 Malus domestica HOM05D003586 ORTHO05D004036 0.0e+00 2104.7 2187 54.1
Prupe.2G273000 Prunus persica HOM05D003586 ORTHO05D004036 0.0e+00 2092.0 2187 53.9
Potri.003G151500 Populus trichocarpa HOM05D003586 ORTHO05D004036 0.0e+00 2090.5 2176 53.1
COL.COLO4_37344 Corchorus olitorius HOM05D003586 ORTHO05D004036 0.0e+00 2079.3 2236 52.6
Haze_22192 Corylus avellana HOM05D003586 ORTHO05D004036 0.0e+00 2070.4 2220 52.8
Manes.14G038400 Manihot esculenta HOM05D003586 ORTHO05D004036 0.0e+00 2067.4 2182 52.5
Gohir.D07G047701 Gossypium hirsutum HOM05D003586 ORTHO05D004036 0.0e+00 2063.5 2206 51.7
Gorai.001G050900 Gossypium raimondii HOM05D003586 ORTHO05D004036 0.0e+00 2059.3 2206 51.6
Sabra03G0109700 Salix brachista HOM05D003586 ORTHO05D004036 0.0e+00 2007.3 2303 49.9
Gohir.A07G043301 Gossypium hirsutum HOM05D003586 ORTHO05D004036 0.0e+00 1995.3 2202 50.8
Oeu060859.1 Olea europaea HOM05D003586 ORTHO05D004036 0.0e+00 1993.4 2179 51.0
DCAR_027698 Daucus carota HOM05D003586 ORTHO05D004036 0.0e+00 1985.7 2202 50.7
Duzib205G0263 Durio zibethinus HOM05D003586 ORTHO05D004036 0.0e+00 1972.6 2194 51.2
Lsat_1_v5_gn_8_9561 Lactuca sativa HOM05D003586 ORTHO05D004036 0.0e+00 1948.7 2179 49.8
LjContig00272g0012466 Lotus japonicus HOM05D003586 ORTHO05D004036 0.0e+00 1946.8 2182 50.5
Glyma.02G290200 Glycine max HOM05D003586 ORTHO05D004036 0.0e+00 1946.4 2186 49.8
HanXRQChr05g0139491 Helianthus annuus HOM05D003586 ORTHO05D004036 0.0e+00 1938.3 2181 49.7
Lalb_Chr04g0248471 Lupinus albus HOM05D003586 ORTHO05D004036 0.0e+00 1938.3 2183 50.0
FvH4_7g26990 Fragaria vesca HOM05D003586 ORTHO05D004036 0.0e+00 1936.0 2179 50.7
Solyc03g093480.3 Solanum lycopersicum HOM05D003586 ORTHO05D004036 0.0e+00 1936.0 2182 49.6
CsaV3_4G004170 Cucumis sativus L. HOM05D003586 ORTHO05D004036 0.0e+00 1927.9 2180 49.1
Sopen03g024310 Solanum pennellii HOM05D003586 ORTHO05D004036 0.0e+00 1925.2 2182 49.4
Lj8C46T11 Lonicera japonica HOM05D003586 ORTHO05D004036 0.0e+00 1924.1 2172 50.8
FAN03G1177 Fragaria x ananassa HOM05D003586 ORTHO05D004036 0.0e+00 1916.0 2198 50.1
AUR62025663 Chenopodium quinoa HOM05D003586 ORTHO05D004036 0.0e+00 1914.8 2180 48.6
EL10Ac7g18161 Beta vulgaris HOM05D003586 ORTHO05D004036 0.0e+00 1912.9 2179 48.9
FAN06G2502 Fragaria x ananassa HOM05D003586 ORTHO05D004036 0.0e+00 1912.1 2211 50.1
Psat2g013320 Pisum sativum HOM05D003586 ORTHO05D004036 0.0e+00 1906.3 2179 49.5
Hund18595 Selenicereus undatus HOM05D003586 ORTHO05D004036 0.0e+00 1906.0 2181 49.2
Ca_26483_v3 Cicer arietinum L. HOM05D003586 ORTHO05D004036 0.0e+00 1904.4 2183 49.8
AUR62001342 Chenopodium quinoa HOM05D003586 ORTHO05D004036 0.0e+00 1903.6 2180 48.5
FAN10G2285 Fragaria x ananassa HOM05D003586 ORTHO05D004036 0.0e+00 1902.1 2212 49.9
Nitab4.5_0003173g0040 Nicotiana tabacum HOM05D003586 ORTHO05D004036 0.0e+00 1902.1 2182 49.5
Glyma.14G024600 Glycine max HOM05D003586 ORTHO05D004036 0.0e+00 1899.0 2184 49.0
FAN01G1639 Fragaria x ananassa HOM05D003586 ORTHO05D004036 0.0e+00 1895.2 2212 49.8
Phvul.008G266400 Phaseolus vulgaris HOM05D003586 ORTHO05D004036 0.0e+00 1879.0 2191 48.7
Sed0010855 Sechium edule HOM05D003586 ORTHO05D004036 0.0e+00 1877.8 2181 48.4
Peaxi162Scf00271g00727 Petunia axillaris HOM05D003586 ORTHO05D004036 0.0e+00 1875.9 2182 48.2
TPR.G1178 Trifolium pratense HOM05D003586 ORTHO05D004036 0.0e+00 1871.3 2169 49.5
arahy.Tifrunner.gnm1.ann1.DI5547 Arachis hypogaea HOM05D003586 ORTHO05D004036 0.0e+00 1870.9 2186 49.3
arahy.Tifrunner.gnm1.ann1.1899LM Arachis hypogaea HOM05D003586 ORTHO05D004036 0.0e+00 1869.4 2186 49.3
PGR042G0622 Punica granatum HOM05D003586 ORTHO05D004036 0.0e+00 1863.2 2186 48.4
Cc02_g04680 Coffea canephora HOM05D003586 ORTHO05D004036 0.0e+00 1862.0 2190 48.9
MSTRG.139 Avicennia marina HOM05D003586 ORTHO05D004036 0.0e+00 1847.8 2181 48.7
CiPaw.07G185400 Carya illinoinensis HOM05D003586 ORTHO05D004036 0.0e+00 1842.0 1975 51.8
ECA233G0107 Erigeron canadensis HOM05D003586 ORTHO05D004036 0.0e+00 1831.6 2178 47.9
ATR0057G101 Amborella trichopoda HOM05D003586 ORTHO05D004036 0.0e+00 1820.1 2217 48.7
THA.LOC104811536 Tarenaya hassleriana HOM05D003586 ORTHO05D004036 0.0e+00 1801.6 2247 46.3
Migut.O00372 Erythranthe guttata HOM05D003586 ORTHO05D004036 0.0e+00 1753.8 2199 47.0
Zm00001eb123540 Zea mays HOM05D003586 ORTHO05D004036 0.0e+00 1741.1 2184 45.3
SGA_v2.0_scaffold56G19917 Striga asiatica HOM05D003586 ORTHO05D004036 0.0e+00 1713.0 2309 43.9
Thhalv10019871m.g Eutrema salsugineum HOM05D003586 ORTHO05D004036 0.0e+00 1707.2 2255 45.1
AT3G06530 Arabidopsis thaliana HOM05D003586 ORTHO05D004036 0.0e+00 1706.8 2253 45.1
CDE04G1406 Ceratophyllum demersum HOM05D003586 ORTHO05D004036 0.0e+00 1702.6 2191 46.0
Carub.0003s0599 Capsella rubella HOM05D003586 ORTHO05D004036 0.0e+00 1701.8 2254 44.6
Ah.08g217720 Amaranthus hybridus HOM05D003586 ORTHO05D004036 0.0e+00 1701.4 2168 45.6
AL3G17560 Arabidopsis lyrata HOM05D003586 ORTHO05D004036 0.0e+00 1698.3 2261 44.8
CARHR081080 Cardamine hirsuta HOM05D003586 ORTHO05D004036 0.0e+00 1689.9 2250 44.9
BraA05t22871Z Brassica rapa HOM05D003586 ORTHO05D004036 0.0e+00 1682.2 2251 44.4
Sc20g0000680 Simmondsia chinensis HOM05D003586 ORTHO05D004036 0.0e+00 1671.8 1963 48.3
Aa31LG5G17060 Aethionema arabicum HOM05D003586 ORTHO05D004036 0.0e+00 1671.4 2249 44.2
Medtr5g092370 Medicago truncatula HOM05D003586 ORTHO05D004036 0.0e+00 1666.4 2182 46.7
C05p60700 Brassica napus HOM05D003586 ORTHO05D004036 0.0e+00 1649.4 2247 43.8
Sp3g05470 Schrenkiella parvula HOM05D003586 ORTHO05D004036 0.0e+00 1640.9 2249 43.4
BolC5t34730H Brassica oleracea HOM05D003586 ORTHO05D004036 0.0e+00 1637.5 2255 43.5
RcHm_v2.0_Chr1g0373721 Rosa chinensis HOM05D003586 ORTHO05D004036 0.0e+00 1581.6 1824 50.3
SHI14045 Sapria himalayana HOM05D003586 ORTHO05D004036 0.0e+00 1541.2 2337 42.0
Nitab4.5_0005495g0020 Nicotiana tabacum HOM05D003586 ORTHO05D004036 0.0e+00 1508.8 1915 45.9
Eucgr.A02921 Eucalyptus grandis HOM05D003586 ORTHO05D004036 0.0e+00 1461.0 1779 46.9
CANSAT56G2655 Cannabis sativa HOM05D003586 ORTHO05D004036 0.0e+00 1386.7 1869 45.5
Actinidia13607 Actinidia chinensis HOM05D003586 ORTHO05D004036 0.0e+00 1343.2 1436 53.6
ClCG07G016940 Citrullus lanatus HOM05D003586 ORTHO05D004036 0.0e+00 1334.7 1709 46.3
Atru.chr1.904 Acer truncatum HOM05D003586 ORTHO05D004036 0.0e+00 1332.4 1385 52.7
A05p41500 Brassica napus HOM05D003586 ORTHO05D004036 0.0e+00 1276.9 1852 42.1
SalBow2G0990 Salvia bowleyana HOM05D003586 ORTHO05D004036 0.0e+00 1271.5 1538 47.3
A03p34730 Brassica napus HOM05D003586 ORTHO05D004036 0.0e+00 1261.5 1860 41.7
BolC3t16501H Brassica oleracea HOM05D003586 ORTHO05D004036 0.0e+00 1260.4 1860 41.8
BraA03t12653Z Brassica rapa HOM05D003586 ORTHO05D004036 0.0e+00 1259.6 1860 41.7
C03p42210 Brassica napus HOM05D003586 ORTHO05D004036 0.0e+00 1251.5 1859 41.6
CAN.G485.20 Capsicum annuum HOM05D003586 ORTHO05D004036 0.0e+00 1207.2 1476 47.0
MBI05_g26488_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 0.0e+00 1164.1 1420 48.7
unitig_62.g23920 Utricularia gibba HOM05D003586 ORTHO05D004036 0.0e+00 1102.0 2200 35.2
Hma1.2p1_1404F.1_g281290 Hydrangea macrophylla HOM05D003586 ORTHO05D004036 2.8e-308 1063.1 1064 56.0
MELO3C017650.2 Cucumis melo HOM05D003586 ORTHO05D004036 2.1e-300 1036.9 1190 47.8
Mapoly0043s0008 Marchantia polymorpha HOM05D003586 ORTHO05D004036 6.8e-291 1005.4 2212 32.5
Cpa.g.sc13.262 Carica papaya HOM05D003586 ORTHO05D004036 1.0e-286 991.5 981 56.9
HPP92_014934 Vanilla planifolia HOM05D003586 ORTHO05D004036 2.2e-281 973.8 1207 47.2
Pp3c3_10580 Physcomitrium patens HOM05D003586 ORTHO05D004036 3.8e-281 973.0 2220 32.2
HPP92_014907 Vanilla planifolia HOM05D003586 ORTHO05D004036 1.5e-261 907.9 1160 44.3
MBI05_g28033_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 1.8e-259 901.0 806 60.9
SMO358G0582 Selaginella moellendorffii HOM05D003586 ORTHO05D004036 1.2e-242 845.1 2181 30.3
MBI13_g48198_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 3.7e-236 823.5 851 55.7
AagrBONN_evm.TU.Sc2ySwM_344.3595 Anthoceros agrestis HOM05D003586 ORTHO05D004036 1.5e-234 818.1 2114 29.4
MBI01_g47166_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 3.4e-234 817.0 848 55.9
Hma1.2p1_1404F.1_g281300 Hydrangea macrophylla HOM05D003586 ORTHO05D004036 6.3e-228 796.2 726 58.8
CBR_g19186 Chara braunii HOM05D003586 ORTHO05D004036 9.7e-221 772.3 2367 28.4
MBI13_g42134_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 2.7e-202 711.1 803 52.9
CANSAT56G4028 Cannabis sativa HOM05D003586 ORTHO05D004036 3.9e-193 680.6 861 45.4
CAN.G485.19 Capsicum annuum HOM05D003586 ORTHO05D004036 7.8e-170 603.2 630 51.1
Hma1.2p1_1580F.1_g291890 Hydrangea macrophylla HOM05D003586 ORTHO05D004036 6.2e-167 593.6 636 51.3
MBI01_g47186_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 1.5e-165 589.0 701 48.9
SalBow2G2772 Salvia bowleyana HOM05D003586 ORTHO05D004036 3.0e-153 548.1 631 48.5
ClCG07G016950 Citrullus lanatus HOM05D003586 ORTHO05D004036 4.0e-142 511.1 501 53.3
MBI13_g19469_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 2.7e-138 498.4 768 41.7
Cpa.g.sc13.258 Carica papaya HOM05D003586 ORTHO05D004036 9.6e-136 490.0 558 49.3
FAN06G4468 Fragaria x ananassa HOM05D003586 ORTHO05D004036 5.9e-133 480.7 651 43.6
MBI01_g30817_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 5.9e-133 480.7 610 46.9
SEGI_04827 Sequoiadendron giganteum HOM05D003586 ORTHO05D004036 1.1e-131 476.5 654 41.9
MBI05_g26487_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 1.0e-129 469.9 411 59.9
MBI01_g18557_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 2.1e-114 419.1 405 58.5
SHI14048 Sapria himalayana HOM05D003586 ORTHO05D004036 1.3e-108 399.8 875 35.3
RcHm_v2.0_Chr1g0373711 Rosa chinensis HOM05D003586 ORTHO05D004036 4.1e-102 378.3 361 55.4
MBI01_g47337_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 5.3e-102 377.9 493 47.9
Nitab4.5_0005495g0030 Nicotiana tabacum HOM05D003586 ORTHO05D004036 2.5e-99 369.0 310 61.3
Oeu055354.1 Olea europaea HOM05D003586 ORTHO05D004036 1.7e-95 356.3 397 48.9
THA.LOC104802945 Tarenaya hassleriana HOM05D003586 ORTHO05D004036 4.3e-83 315.1 267 62.2
MBI01_g24305_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 2.0e-80 306.2 388 47.2
Glyma.03G109700 Glycine max HOM05D003586 ORTHO05D004036 4.4e-80 305.1 390 43.3
Oeu013973.1 Olea europaea HOM05D003586 ORTHO05D004036 5.4e-78 298.1 307 54.1
TPR.G35189 Trifolium pratense HOM05D003586 ORTHO05D004036 2.7e-77 295.8 390 44.1
Os04g0548300 Oryza sativa ssp. japonica HOM05D003586 ORTHO05D004036 1.1e-75 290.4 233 65.2
Cpa.g.sc13.260 Carica papaya HOM05D003586 ORTHO05D004036 4.7e-74 285.0 605 34.0
MBI01_g18556_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 6.8e-73 281.2 338 50.3
Migut.F01200 Erythranthe guttata HOM05D003586 ORTHO05D004036 1.3e-71 276.9 221 67.0
Lsat_1_v5_gn_1_161 Lactuca sativa HOM05D003586 ORTHO05D004036 7.0e-70 271.2 475 37.3
PSO782G1165 Papaver somniferum HOM05D003586 ORTHO05D004036 7.3e-67 261.2 390 44.1
Glyma.08G286950 Glycine max HOM05D003586 ORTHO05D004036 2.2e-63 249.6 323 42.4
Atru.chr1.903 Acer truncatum HOM05D003586 ORTHO05D004036 2.9e-63 249.2 274 53.3
Rhsim03G0111100 Rhododendron simsii HOM05D003586 ORTHO05D004036 3.7e-63 248.8 364 40.4
FAN06G2869 Fragaria x ananassa HOM05D003586 ORTHO05D004036 5.1e-60 238.4 194 62.9
MCO07G739 Micromonas commoda HOM05D003586 ORTHO05D004036 7.8e-53 214.5 564 30.9
Dinv06589 Davidia involucrata HOM05D003586 ORTHO05D004036 2.3e-52 213.0 127 84.3
Psat0s4851g0040 Pisum sativum HOM05D003586 ORTHO05D004036 4.4e-48 198.7 223 48.9
Psat0s7016g0120 Pisum sativum HOM05D003586 ORTHO05D004036 4.4e-48 198.7 223 48.9
PGSC0003DMG400010751 Solanum tuberosum HOM05D003586 ORTHO05D004036 4.4e-48 198.7 115 87.0
Cre12.g548000 Chlamydomonas reinhardtii HOM05D003586 ORTHO05D004036 2.9e-47 196.1 1119 22.9
SHI14050 Sapria himalayana HOM05D003586 ORTHO05D004036 2.4e-46 193.0 145 66.9
PSO782G1733 Papaver somniferum HOM05D003586 ORTHO05D004036 5.4e-46 191.8 237 44.3
Psat1g100680 Pisum sativum HOM05D003266 ORTHO05D003718 1.9e-38 166.8 223 45.7
Gorai.003G117300 Gossypium raimondii HOM05D003586 ORTHO05D004036 3.0e-36 159.5 177 45.2
Gohir.D03G110801 Gossypium hirsutum HOM05D003586 ORTHO05D004036 1.5e-35 157.1 177 45.2
MBI13_g17200_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 1.9e-35 156.8 94 86.2
Psat5g116160 Pisum sativum HOM05D003586 ORTHO05D004036 1.3e-34 154.1 161 50.3
THA.LOC104803128 Tarenaya hassleriana HOM05D003586 ORTHO05D004036 5.5e-30 138.7 224 38.4
Cfa023294 Carpinus fangiana HOM05D003586 ORTHO05D004036 3.5e-29 136.0 890 22.4
SEGI_01219 Sequoiadendron giganteum HOM05D003586 ORTHO05D004036 5.6e-27 128.6 241 33.2
HPP92_014933 Vanilla planifolia HOM05D003586 ORTHO05D004036 6.9e-25 121.7 201 36.8
VMungo0251G1425 Vigna mungo HOM05D003586 ORTHO05D004036 3.5e-21 109.4 146 39.7
SEGI_38341 Sequoiadendron giganteum HOM05D003586 ORTHO05D004036 1.6e-18 100.5 180 36.7
Ah.05g175250 Amaranthus hybridus HOM05D003586 ORTHO05D004036 5.9e-16 92.0 130 39.2
Psat1g036520 Pisum sativum HOM05D003586 ORTHO05D004036 8.5e-15 88.2 129 41.9
Actinidia09313 Actinidia chinensis HOM05D003586 ORTHO05D004036 2.5e-14 86.7 78 61.5
arahy.Tifrunner.gnm1.ann1.KSY044 Arachis hypogaea HOM05D000218 ORTHO05D000125 3.6e-13 82.8 82 52.4
SHI14054 Sapria himalayana HOM05D003586 ORTHO05D004036 1.0e-12 81.3 58 67.2
CDE12G0325 Ceratophyllum demersum HOM05D003586 ORTHO05D004036 1.3e-12 80.9 86 50.0
SMO358G0141 Selaginella moellendorffii HOM05D003586 ORTHO05D377094 9.1e-09 68.2 113 38.1
Aa31LG5G17080 Aethionema arabicum HOM05D003586 ORTHO05D004036 3.4e-08 66.2 46 73.9
Psat5g053280 Pisum sativum HOM05D003586 ORTHO05D004036 3.4e-08 66.2 55 60.0
Ca_11520_v3 Cicer arietinum L. HOM05D003586 ORTHO05D009105 4.5e-08 65.9 43 67.4
arahy.Tifrunner.gnm1.ann1.EJWE4G Arachis hypogaea HOM05D003586 ORTHO05D004036 7.7e-08 65.1 41 65.9
arahy.Tifrunner.gnm1.ann1.AGWW40 Arachis hypogaea HOM05D000072 ORTHO05D000026 1.0e-07 64.7 41 65.9
Psat0s4928g0040 Pisum sativum HOM05D000188 ORTHO05D003976 1.4e-06 60.8 92 34.8
SMO142G0017 Selaginella moellendorffii HOM05D003586 ORTHO05D004036 4.2e-06 59.3 212 26.4
C05p54660 Brassica napus HOM05D000558 ORTHO05D004036 7.2e-06 58.5 309 26.2
arahy.Tifrunner.gnm1.ann1.6U43LH Arachis hypogaea HOM05D003586 ORTHO05D004036 9.4e-06 58.2 34 70.6


User provided reference genes

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