Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy7G00833 Aquilegia oxysepala HOM05D005002 ORTHO05D006016 6.4e-48 193.7 97 100.0
Actinidia03570 Actinidia chinensis HOM05D005002 ORTHO05D006016 2.3e-29 132.1 75 89.3
Actinidia14152 Actinidia chinensis HOM05D005002 ORTHO05D006016 2.3e-29 132.1 75 89.3
Dinv03972 Davidia involucrata HOM05D005002 ORTHO05D006016 2.3e-29 132.1 74 90.5
PSO782G1729 Papaver somniferum HOM05D005002 ORTHO05D006016 3.9e-29 131.3 73 89.0
Duzib168G1293 Durio zibethinus HOM05D005002 ORTHO05D006016 8.7e-29 130.2 75 85.3
Gohir.A05G062833 Gossypium hirsutum HOM05D005002 ORTHO05D006016 1.1e-28 129.8 75 85.3
Gohir.A05G062900 Gossypium hirsutum HOM05D005002 ORTHO05D006016 1.1e-28 129.8 75 85.3
Gohir.D05G065400 Gossypium hirsutum HOM05D005002 ORTHO05D006016 1.1e-28 129.8 75 85.3
Gorai.009G066200 Gossypium raimondii HOM05D005002 ORTHO05D006016 1.1e-28 129.8 75 85.3
PSO478G2205 Papaver somniferum HOM05D005002 ORTHO05D006016 1.5e-28 129.4 73 87.7
Rhsim07G0172200 Rhododendron simsii HOM05D001416 ORTHO05D005885 1.9e-28 129.0 72 87.5
TAR622G0454 Trochodendron aralioides HOM05D005002 ORTHO05D006016 1.9e-28 129.0 74 87.8
CSS0031521 Camellia sinensis var. sinensis HOM05D005002 ORTHO05D006016 2.5e-28 128.6 74 86.5
Dinv03977 Davidia involucrata HOM05D005002 ORTHO05D006016 3.3e-28 128.3 74 86.5
Hma1.2p1_0192F.1_g083460 Hydrangea macrophylla HOM05D005002 ORTHO05D006016 5.6e-28 127.5 70 88.6
CSS0035568 Camellia sinensis var. sinensis HOM05D005002 ORTHO05D006016 7.4e-28 127.1 74 85.1
Lj1g0025268 Lotus japonicus HOM05D005002 ORTHO05D006016 7.4e-28 127.1 74 83.8
CSS0022428 Camellia sinensis var. sinensis HOM05D005002 ORTHO05D006016 1.3e-27 126.3 74 85.1
Haze_18362 Corylus avellana HOM05D005002 ORTHO05D006016 1.3e-27 126.3 74 85.1
vmacro05092 Vaccinium macrocarpon HOM05D005002 ORTHO05D006016 1.3e-27 126.3 73 83.6
Gohir.A07G034400 Gossypium hirsutum HOM05D005002 ORTHO05D006016 1.6e-27 125.9 75 82.7
Gohir.D07G038000 Gossypium hirsutum HOM05D005002 ORTHO05D006016 1.6e-27 125.9 75 82.7
Gorai.001G039800 Gossypium raimondii HOM05D005002 ORTHO05D006016 1.6e-27 125.9 75 82.7
Duzib150G1286 Durio zibethinus HOM05D005002 ORTHO05D006016 2.8e-27 125.2 75 82.7
Glyma.18G054400 Glycine max HOM05D005002 ORTHO05D006016 2.8e-27 125.2 70 87.1
Lsat_1_v5_gn_6_32161 Lactuca sativa HOM05D005002 ORTHO05D006016 2.8e-27 125.2 74 82.4
Nn3g17630 Nelumbo nucifera HOM05D005002 ORTHO05D006016 3.7e-27 124.8 71 85.9
QL01p029339 Quercus lobata HOM05D005002 ORTHO05D006016 3.7e-27 124.8 70 84.3
Cfa017847 Carpinus fangiana HOM05D005002 ORTHO05D006016 4.8e-27 124.4 74 83.8
Oeu008768.2 Olea europaea HOM05D005002 ORTHO05D006016 4.8e-27 124.4 72 83.3
RcHm_v2.0_Chr6g0269591 Rosa chinensis HOM05D005002 ORTHO05D006016 4.8e-27 124.4 79 82.3
VMungo1383G2539 Vigna mungo HOM05D005002 ORTHO05D006016 4.8e-27 124.4 70 85.7
EL10Ac2g02432 Beta vulgaris HOM05D005002 ORTHO05D006016 6.2e-27 124.0 70 84.3
CAN.G566.59 Capsicum annuum HOM05D005002 ORTHO05D006016 6.2e-27 124.0 71 83.1
Glyma.11G160400 Glycine max HOM05D005002 ORTHO05D006016 6.2e-27 124.0 70 85.7
Nitab4.5_0001110g0170 Nicotiana tabacum HOM05D005002 ORTHO05D006016 6.2e-27 124.0 71 83.1
Peaxi162Scf00459g00833 Petunia axillaris HOM05D005002 ORTHO05D006016 8.1e-27 123.6 71 83.1
GSVIVG01023467001 Vitis vinifera HOM05D005002 ORTHO05D006016 8.1e-27 123.6 71 84.5
Phvul.008G002400 Phaseolus vulgaris HOM05D005002 ORTHO05D006016 1.1e-26 123.2 70 85.7
TWI63G0754 Tripterygium wilfordii HOM05D005002 ORTHO05D006016 1.1e-26 123.2 75 80.0
Lalb_Chr08g0234011 Lupinus albus HOM05D005002 ORTHO05D006016 1.4e-26 122.9 75 82.7
AUR62020301 Chenopodium quinoa HOM05D005002 ORTHO05D006016 1.8e-26 122.5 70 82.9
AUR62037698 Chenopodium quinoa HOM05D005002 ORTHO05D006016 1.8e-26 122.5 70 82.9
Manes.03G005700 Manihot esculenta HOM05D005002 ORTHO05D006016 1.8e-26 122.5 72 80.6
Solyc12g096470.2 Solanum lycopersicum HOM05D005002 ORTHO05D006016 1.8e-26 122.5 71 81.7
Sopen12g032300 Solanum pennellii HOM05D005002 ORTHO05D006016 1.8e-26 122.5 71 81.7
PGSC0003DMG400029278 Solanum tuberosum HOM05D005002 ORTHO05D006016 1.8e-26 122.5 71 81.7
Cc00_g22050 Coffea canephora HOM05D005002 ORTHO05D006016 2.4e-26 122.1 66 87.9
Thecc.09G010700 Theobroma cacao HOM05D005002 ORTHO05D006016 2.4e-26 122.1 75 80.0
VMungo1383G3578 Vigna mungo HOM05D005002 ORTHO05D006016 2.4e-26 122.1 70 84.3
BcaC01g01070 Brassica carinata HOM05D005002 ORTHO05D006016 4.0e-26 121.3 75 77.3
C03p87650 Brassica napus HOM05D005002 ORTHO05D006016 4.0e-26 121.3 75 77.3
A08p18490 Brassica napus HOM05D005002 ORTHO05D006016 5.3e-26 120.9 75 77.3
Migut.A00405 Erythranthe guttata HOM05D005002 ORTHO05D006016 5.3e-26 120.9 72 79.2
MD08G1049200 Malus domestica HOM05D005002 ORTHO05D006016 5.3e-26 120.9 72 80.6
Medtr7g080740 Medicago truncatula HOM05D005002 ORTHO05D006016 5.3e-26 120.9 78 79.5
SalBow4G2991 Salvia bowleyana HOM05D005002 ORTHO05D006016 5.3e-26 120.9 72 79.2
AL7G20310 Arabidopsis lyrata HOM05D005002 ORTHO05D006016 6.9e-26 120.6 75 77.3
AT4G31720 Arabidopsis thaliana HOM05D005002 ORTHO05D006016 6.9e-26 120.6 75 77.3
BcaC09g51961 Brassica carinata HOM05D005002 ORTHO05D006016 6.9e-26 120.6 75 77.3
BcaNung05179 Brassica carinata HOM05D005002 ORTHO05D006016 6.9e-26 120.6 75 77.3
A01p06560 Brassica napus HOM05D005002 ORTHO05D006016 6.9e-26 120.6 75 77.3
C01p07220 Brassica napus HOM05D005002 ORTHO05D006016 6.9e-26 120.6 75 77.3
BolC1t00713H Brassica oleracea HOM05D005002 ORTHO05D006016 6.9e-26 120.6 75 77.3
BraA01t00615Z Brassica rapa HOM05D005002 ORTHO05D006016 6.9e-26 120.6 75 77.3
CANSAT25G2804 Cannabis sativa HOM05D005002 ORTHO05D006016 6.9e-26 120.6 70 80.0
Ca_06528_v3 Cicer arietinum L. HOM05D005002 ORTHO05D006016 6.9e-26 120.6 78 78.2
Sp7g29520 Schrenkiella parvula HOM05D005002 ORTHO05D006016 6.9e-26 120.6 75 77.3
THA.LOC104819944 Tarenaya hassleriana HOM05D005002 ORTHO05D006016 6.9e-26 120.6 75 78.7
GSVIVG01023464001 Vitis vinifera HOM05D005002 ORTHO05D006016 6.9e-26 120.6 71 81.7
ECA238G2697 Erigeron canadensis HOM05D005002 ORTHO05D006016 9.0e-26 120.2 78 76.9
BraA08t33811Z Brassica rapa HOM05D005002 ORTHO05D006016 1.2e-25 119.8 75 77.3
HanXRQChr07g0195931 Helianthus annuus HOM05D005002 ORTHO05D006016 1.2e-25 119.8 75 78.7
FvH4_2g11240 Fragaria vesca HOM05D005002 ORTHO05D006016 1.5e-25 119.4 82 75.6
Prupe.1G399400 Prunus persica HOM05D005002 ORTHO05D006016 1.5e-25 119.4 81 76.5
BolC3t21083H Brassica oleracea HOM05D000888 ORTHO05D000740 2.0e-25 119.0 75 76.0
Carub.0007s0884 Capsella rubella HOM05D005002 ORTHO05D006016 2.0e-25 119.0 75 76.0
RcHm_v2.0_Chr2g0161651 Rosa chinensis HOM05D005002 ORTHO05D006016 2.0e-25 119.0 71 84.5
CSS0010222 Camellia sinensis var. sinensis HOM05D005002 ORTHO05D006016 2.6e-25 118.6 74 82.4
ClCG08G013890 Citrullus lanatus HOM05D005002 ORTHO05D006016 2.6e-25 118.6 75 77.3
MELO3C011321.2 Cucumis melo HOM05D005002 ORTHO05D006016 2.6e-25 118.6 75 77.3
HanXRQChr14g0453401 Helianthus annuus HOM05D005002 ORTHO05D006016 2.6e-25 118.6 75 77.3
TWI34G0825 Tripterygium wilfordii HOM05D005002 ORTHO05D006016 2.6e-25 118.6 72 79.2
Psat0s2083g0280 Pisum sativum HOM05D005002 ORTHO05D006016 3.4e-25 118.2 69 81.2
Aa31LG2G18620 Aethionema arabicum HOM05D005002 ORTHO05D006016 4.5e-25 117.9 71 76.1
Thhalv10026546m.g Eutrema salsugineum HOM05D005002 ORTHO05D006016 4.5e-25 117.9 75 74.7
Sed0003546 Sechium edule HOM05D005002 ORTHO05D006016 4.5e-25 117.9 73 75.3
DCAR_020711 Daucus carota HOM05D004285 ORTHO05D006016 5.8e-25 117.5 71 80.3
DCAR_020712 Daucus carota HOM05D005002 ORTHO05D006016 5.8e-25 117.5 71 80.3
Ciclev10009813m.g Citrus clementina HOM05D005002 ORTHO05D006016 7.6e-25 117.1 80 75.0
MD15G1045700 Malus domestica HOM05D005002 ORTHO05D006016 7.6e-25 117.1 72 77.8
QL02p017669 Quercus lobata HOM05D005002 ORTHO05D006016 7.6e-25 117.1 75 78.7
THA.LOC104803866 Tarenaya hassleriana HOM05D005002 ORTHO05D006016 7.6e-25 117.1 75 74.7
Eucgr.B03202 Eucalyptus grandis HOM05D005002 ORTHO05D006016 9.9e-25 116.7 70 75.7
BcaB03g12714 Brassica carinata HOM05D005002 ORTHO05D006016 1.3e-24 116.3 75 74.7
PGR044G1228 Punica granatum HOM05D005002 ORTHO05D006016 1.7e-24 115.9 67 79.1
Aqoxy7G00066 Aquilegia oxysepala HOM05D005002 ORTHO05D006016 3.8e-24 114.8 61 91.8
MSTRG.25811 Avicennia marina HOM05D005002 ORTHO05D006016 3.8e-24 114.8 72 75.0
Sed0020410 Sechium edule HOM05D005002 ORTHO05D006016 3.8e-24 114.8 73 72.6
TPR.G12644 Trifolium pratense HOM05D005002 ORTHO05D006016 3.8e-24 114.8 70 82.9
TPR.G15628 Trifolium pratense HOM05D005002 ORTHO05D006016 3.8e-24 114.8 71 81.7
arahy.Tifrunner.gnm1.ann1.1V29TX Arachis hypogaea HOM05D005002 ORTHO05D006016 4.9e-24 114.4 73 76.7
arahy.Tifrunner.gnm1.ann1.JDP7FN Arachis hypogaea HOM05D005002 ORTHO05D006016 4.9e-24 114.4 73 76.7
unitig_92.g28144 Utricularia gibba HOM05D003482 ORTHO05D004194 6.4e-24 114.0 73 75.3
HPP92_000490 Vanilla planifolia HOM05D005002 ORTHO05D006016 6.4e-24 114.0 69 76.8
SGA_v2.0_scaffold193G40677 Striga asiatica HOM05D005002 ORTHO05D006016 4.2e-23 111.3 96 60.4
CDE02G2218 Ceratophyllum demersum HOM05D002187 ORTHO05D002243 7.1e-23 110.5 69 75.4
CDE04G1191 Ceratophyllum demersum HOM05D005002 ORTHO05D006016 7.1e-23 110.5 69 75.4
FAN24G1669 Fragaria x ananassa HOM05D005002 ORTHO05D006016 1.2e-22 109.8 95 65.3
Lalb_Chr10g0091021 Lupinus albus HOM05D005002 ORTHO05D006016 1.6e-22 109.4 74 74.3
Sc23g0006270 Simmondsia chinensis HOM05D005002 ORTHO05D006016 1.6e-22 109.4 65 80.0
Potri.018G013300 Populus trichocarpa HOM05D005002 ORTHO05D006016 2.7e-22 108.6 60 83.3
Sabra18G0017200 Salix brachista HOM05D005002 ORTHO05D006016 2.7e-22 108.6 60 83.3
BcaC09g51957 Brassica carinata HOM05D005002 ORTHO05D006016 4.6e-22 107.8 77 72.7
ATR0691G047 Amborella trichopoda HOM05D005002 ORTHO05D006016 6.0e-22 107.5 68 73.5
Os09g0431500 Oryza sativa ssp. japonica HOM05D005002 ORTHO05D006016 6.0e-22 107.5 66 72.7
Zm00001eb313590 Zea mays HOM05D005002 ORTHO05D006016 1.9e-20 102.4 68 67.6
COL.COLO4_21113 Corchorus olitorius HOM05D005002 ORTHO05D006016 7.4e-20 100.5 65 72.3
Mapoly0011s0105 Marchantia polymorpha HOM05D005002 ORTHO05D006016 1.6e-19 99.4 63 68.3
Pp3c6_16040 Physcomitrium patens HOM05D005002 ORTHO05D006016 6.2e-19 97.4 61 67.2
Lju41A41T35 Lonicera japonica HOM05D005002 ORTHO05D006016 9.0e-18 93.6 147 41.5
Lalb_Chr08g0233961 Lupinus albus HOM05D005002 ORTHO05D006016 1.2e-17 93.2 53 84.9
BcaC09g51955 Brassica carinata HOM05D005002 ORTHO05D006016 2.0e-17 92.4 75 61.3
CiPaw.15G092700 Carya illinoinensis HOM05D005002 ORTHO05D006016 2.2e-16 89.0 53 79.2
FAN27G2219 Fragaria x ananassa HOM05D005002 ORTHO05D006016 6.5e-16 87.4 50 84.0
FAN15G1411 Fragaria x ananassa HOM05D000348 ORTHO05D000244 2.5e-15 85.5 43 95.3
COL.COLO4_27723 Corchorus olitorius HOM05D005002 ORTHO05D006016 9.3e-15 83.6 52 75.0
FAN20G1660 Fragaria x ananassa HOM05D005002 ORTHO05D006016 9.3e-15 83.6 61 68.9
SMO141G0065 Selaginella moellendorffii HOM05D005002 ORTHO05D006016 1.6e-14 82.8 62 64.5
SMO356G0735 Selaginella moellendorffii HOM05D005002 ORTHO05D006016 7.9e-14 80.5 61 59.0
Phvul.009G222000 Phaseolus vulgaris HOM05D005002 ORTHO05D006016 6.7e-13 77.4 46 73.9
EL10Ac5g10893 Beta vulgaris HOM05D005002 ORTHO05D006016 8.7e-13 77.0 45 77.8
Actinidia25736 Actinidia chinensis HOM05D005002 ORTHO05D006016 2.4e-10 68.9 88 50.0
Ah.09g224730 Amaranthus hybridus HOM05D005002 ORTHO05D006016 3.1e-10 68.6 76 53.9
PRCOL_00006189 Prasinoderma coloniale HOM05D005002 ORTHO05D006016 1.3e-08 63.2 62 40.3
CBR_g30254 Chara braunii HOM05D005002 ORTHO05D006016 2.9e-08 62.0 41 63.4
HanXRQChr14g0435251 Helianthus annuus HOM05D005002 ORTHO05D006016 1.4e-07 59.7 55 58.2
unitig_93.g30701 Utricularia gibba HOM05D005002 ORTHO05D006016 7.2e-07 57.4 73 46.6
MCO01G145 Micromonas commoda HOM05D005002 ORTHO05D006016 2.7e-06 55.5 58 44.8


User provided reference genes

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