Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy7G00749 Aquilegia oxysepala HOM05D007638 ORTHO05D009805 5.9e-220 767.3 410 100.0
TAR636G1390 Trochodendron aralioides HOM05D007638 ORTHO05D009805 1.1e-128 464.2 420 57.9
Nn1g01039 Nelumbo nucifera HOM05D007638 ORTHO05D009805 4.5e-119 432.2 427 52.9
QL12p012553 Quercus lobata HOM05D007638 ORTHO05D009805 3.8e-110 402.5 402 56.0
GSVIVG01001312001 Vitis vinifera HOM05D007638 ORTHO05D009805 2.5e-109 399.8 417 49.9
Dinv39130 Davidia involucrata HOM05D007638 ORTHO05D009805 2.7e-108 396.4 431 48.5
Cfa012740 Carpinus fangiana HOM05D007638 ORTHO05D009805 2.3e-107 393.3 414 51.9
CiPaw.12G109000 Carya illinoinensis HOM05D007638 ORTHO05D009805 5.7e-106 388.7 404 49.8
Hma1.2p1_2238F.1_g317800 Hydrangea macrophylla HOM05D007638 ORTHO05D009805 7.5e-106 388.3 414 51.2
Thecc.03G253300 Theobroma cacao HOM05D007638 ORTHO05D009805 2.8e-105 386.3 410 48.5
PSO781G0038 Papaver somniferum HOM05D007638 ORTHO05D009805 3.7e-105 386.0 437 52.6
Sc07g0009320 Simmondsia chinensis HOM05D007638 ORTHO05D009805 9.1e-104 381.3 406 48.8
Manes.02G038700 Manihot esculenta HOM05D007638 ORTHO05D009805 3.5e-103 379.4 415 48.7
Sopen08g027220 Solanum pennellii HOM05D007638 ORTHO05D009805 2.9e-102 376.3 428 47.2
CAN.G1218.20 Capsicum annuum HOM05D007638 ORTHO05D009805 3.8e-102 375.9 429 46.6
CANSAT21G1304 Cannabis sativa HOM05D007638 ORTHO05D009805 5.0e-102 375.6 413 47.9
Gohir.D09G190600 Gossypium hirsutum HOM05D007638 ORTHO05D009805 8.6e-102 374.8 408 48.5
TWI15G0131 Tripterygium wilfordii HOM05D007638 ORTHO05D009805 1.1e-101 374.4 405 48.4
Cc08_g12610 Coffea canephora HOM05D007638 ORTHO05D009805 2.5e-101 373.2 444 45.7
Prupe.5G071400 Prunus persica HOM05D007638 ORTHO05D009805 3.3e-101 372.9 421 47.3
Solyc08g078750.4 Solanum lycopersicum HOM05D007638 ORTHO05D009805 3.3e-101 372.9 428 46.7
Gohir.A09G196000 Gossypium hirsutum HOM05D007638 ORTHO05D009805 4.2e-101 372.5 407 48.2
Gorai.006G213300 Gossypium raimondii HOM05D007638 ORTHO05D009805 7.2e-101 371.7 408 48.5
Hund14529 Selenicereus undatus HOM05D007638 ORTHO05D009805 2.1e-100 370.2 420 48.3
Atru.chr9.1327 Acer truncatum HOM05D007638 ORTHO05D009805 4.7e-100 369.0 407 46.9
AUR62007504 Chenopodium quinoa HOM05D007638 ORTHO05D009805 4.0e-99 365.9 421 48.5
HanXRQChr17g0549771 Helianthus annuus HOM05D007638 ORTHO05D009805 5.2e-99 365.5 422 47.4
Sed0016401 Sechium edule HOM05D007638 ORTHO05D009805 2.0e-98 363.6 408 48.5
arahy.Tifrunner.gnm1.ann1.UY0NCU Arachis hypogaea HOM05D007638 ORTHO05D009805 3.4e-98 362.8 410 46.6
EL10Ac5g13054 Beta vulgaris HOM05D007638 ORTHO05D009805 4.4e-98 362.5 424 45.5
Lj4g0022413 Lotus japonicus HOM05D007638 ORTHO05D009805 1.3e-97 360.9 407 46.7
PSO541G0423 Papaver somniferum HOM05D007638 ORTHO05D009805 2.2e-97 360.1 357 52.4
arahy.Tifrunner.gnm1.ann1.E4IRCP Arachis hypogaea HOM05D007638 ORTHO05D009805 4.9e-97 359.0 410 46.1
MD06G1060400 Malus domestica HOM05D007638 ORTHO05D009805 1.1e-96 357.8 424 47.4
Oeu017018.1 Olea europaea HOM05D007638 ORTHO05D009805 1.1e-96 357.8 422 45.0
Lalb_Chr16g0389341 Lupinus albus HOM05D007638 ORTHO05D009805 4.1e-96 355.9 410 47.3
ATR1153G083 Amborella trichopoda HOM05D007638 ORTHO05D009805 5.4e-96 355.5 407 45.5
Ca_21958_v3 Cicer arietinum L. HOM05D007638 ORTHO05D009805 5.4e-96 355.5 410 45.6
Ciclev10020230m.g Citrus clementina HOM05D007638 ORTHO05D009805 5.4e-96 355.5 422 45.3
Potri.003G110600 Populus trichocarpa HOM05D007638 ORTHO05D009805 1.2e-95 354.4 420 47.1
CsaV3_5G004170 Cucumis sativus L. HOM05D007638 ORTHO05D009805 1.6e-95 354.0 412 47.3
Ah.02g116770 Amaranthus hybridus HOM05D007638 ORTHO05D009805 4.6e-95 352.4 422 45.0
Glyma.05G058500 Glycine max HOM05D007638 ORTHO05D009805 2.3e-94 350.1 431 44.8
Migut.A00967 Erythranthe guttata HOM05D007638 ORTHO05D009805 3.3e-93 346.3 442 45.2
Rhsim09G0039100 Rhododendron simsii HOM05D007638 ORTHO05D009805 3.3e-93 346.3 513 42.7
FvH4_5g18700 Fragaria vesca HOM05D007638 ORTHO05D009805 1.6e-92 344.0 429 44.8
Peaxi162Scf00002g00171 Petunia axillaris HOM05D007638 ORTHO05D009805 1.4e-91 340.9 368 49.7
RcHm_v2.0_Chr7g0202991 Rosa chinensis HOM05D007638 ORTHO05D009805 8.9e-91 338.2 413 46.2
TPR.G37700 Trifolium pratense HOM05D007638 ORTHO05D009805 2.6e-90 336.7 409 50.9
Lsat_1_v5_gn_3_541 Lactuca sativa HOM05D007638 ORTHO05D009805 4.4e-90 335.9 424 44.3
THA.LOC104812781 Tarenaya hassleriana HOM05D007638 ORTHO05D009805 2.9e-89 333.2 438 43.6
Sabra03G0076700 Salix brachista HOM05D007638 ORTHO05D009805 4.1e-88 329.3 420 47.1
MSTRG.25529 Avicennia marina HOM05D007638 ORTHO05D009805 7.0e-88 328.6 349 49.0
FAN13G2113 Fragaria x ananassa HOM05D007638 ORTHO05D009805 2.3e-86 323.6 421 43.5
Psat4g071600 Pisum sativum HOM05D007638 ORTHO05D009805 1.9e-85 320.5 393 46.6
Hma1.2p1_3173F.1_g333580 Hydrangea macrophylla HOM05D007638 ORTHO05D009805 5.6e-85 318.9 382 46.6
Eucgr.D02067 Eucalyptus grandis HOM05D007638 ORTHO05D009805 1.6e-84 317.4 330 48.2
PGR031G3001 Punica granatum HOM05D007638 ORTHO05D009805 8.9e-83 311.6 417 44.6
CDE11G1220 Ceratophyllum demersum HOM05D007638 ORTHO05D009805 2.9e-81 306.6 424 40.3
FAN18G0664 Fragaria x ananassa HOM05D007638 ORTHO05D009805 7.1e-80 302.0 295 51.5
SEGI_06661 Sequoiadendron giganteum HOM05D007638 ORTHO05D009805 7.1e-80 302.0 454 38.8
Nitab4.5_0008481g0020 Nicotiana tabacum HOM05D007638 ORTHO05D009805 6.0e-79 298.9 396 43.7
SGA_v2.0_scaffold120G32873 Striga asiatica HOM05D007638 ORTHO05D009805 2.3e-78 297.0 476 40.1
Sp7g15100 Schrenkiella parvula HOM05D007638 ORTHO05D009805 1.9e-77 293.9 340 43.2
Nitab4.5_0000312g0180 Nicotiana tabacum HOM05D007638 ORTHO05D009805 7.3e-77 292.0 322 49.4
AUR62039957 Chenopodium quinoa HOM05D007638 ORTHO05D009805 4.0e-75 286.2 415 41.9
DCAR_008488 Daucus carota HOM05D007638 ORTHO05D009805 9.2e-72 275.0 281 48.0
Aa31LG2G12650 Aethionema arabicum HOM05D007638 ORTHO05D009805 3.5e-71 273.1 401 40.9
Pp3c9_14850 Physcomitrium patens HOM05D007638 ORTHO05D009805 4.7e-68 262.7 269 46.1
FAN08G1927 Fragaria x ananassa HOM05D007638 ORTHO05D009805 6.2e-68 262.3 424 39.6
ClCG01G003990 Citrullus lanatus HOM05D007638 ORTHO05D009805 1.3e-65 254.6 471 36.9
CBR_g20284 Chara braunii HOM05D007638 ORTHO05D009805 7.1e-64 248.8 284 41.9
Duzib084G1003 Durio zibethinus HOM05D007638 ORTHO05D009805 4.9e-57 226.1 339 44.0
PGSC0003DMG400004754 Solanum tuberosum HOM05D007638 ORTHO05D009805 1.2e-55 221.5 341 39.9
AagrBONN_evm.TU.Sc2ySwM_228.4592 Anthoceros agrestis HOM05D007638 ORTHO05D009805 1.1e-53 214.9 432 32.4
vmacro00554 Vaccinium macrocarpon HOM05D007638 ORTHO05D009805 4.0e-51 206.5 485 33.8
Eucgr.D02064 Eucalyptus grandis HOM05D007638 ORTHO05D009805 1.0e-46 191.8 315 36.2
DCAR_008487 Daucus carota HOM05D007638 ORTHO05D009805 9.6e-45 185.3 335 35.2
Actinidia02124 Actinidia chinensis HOM05D007638 ORTHO05D009805 1.4e-40 171.4 364 39.8
Cpa.g.sc29.142 Carica papaya HOM05D007638 ORTHO05D009805 1.9e-40 171.0 291 43.3
FAN04G2384 Fragaria x ananassa HOM05D007638 ORTHO05D009805 2.1e-39 167.5 158 50.6
MELO3C033998.2 Cucumis melo HOM05D007638 ORTHO05D009805 1.8e-27 127.9 301 35.2
CSS0011551 Camellia sinensis var. sinensis HOM05D007638 ORTHO05D009805 1.4e-22 111.7 58 74.1
unitig_0.g181 Utricularia gibba HOM05D000032 ORTHO05D009383 4.8e-12 76.6 44 68.2
Haze_07891 Corylus avellana HOM05D007638 ORTHO05D009805 6.3e-12 76.3 250 30.0
CBR_g3873 Chara braunii HOM05D000032 ORTHO05D009383 1.1e-11 75.5 54 61.1
Aqoxy7G03583 Aquilegia oxysepala HOM05D000032 ORTHO05D009383 1.8e-11 74.7 62 59.7
Haze_07890 Corylus avellana HOM05D007638 ORTHO05D009805 1.8e-11 74.7 37 83.8
DCAR_008449 Daucus carota HOM05D000032 ORTHO05D009383 2.4e-11 74.3 57 59.6
Rhsim13G0227500 Rhododendron simsii HOM05D006358 ORTHO05D009383 2.4e-11 74.3 51 66.7
GSVIVG01032945001 Vitis vinifera HOM05D007638 ORTHO05D009383 2.4e-11 74.3 62 59.7
MELO3C014755.2 Cucumis melo HOM05D000032 ORTHO05D009383 3.1e-11 73.9 64 54.7
CSS0028588 Camellia sinensis var. sinensis HOM05D000032 ORTHO05D009383 5.3e-11 73.2 58 60.3
ClCG05G012450 Citrullus lanatus HOM05D000032 ORTHO05D009383 5.3e-11 73.2 56 57.1
Zm00001eb235630 Zea mays HOM05D000032 ORTHO05D009383 5.3e-11 73.2 57 56.1
CSS0019503 Camellia sinensis var. sinensis HOM05D000032 ORTHO05D009383 7.0e-11 72.8 57 59.6
Migut.D00539 Erythranthe guttata HOM05D000032 ORTHO05D009383 7.0e-11 72.8 40 72.5
Lalb_Chr03g0043781 Lupinus albus HOM05D000032 ORTHO05D009383 7.0e-11 72.8 58 56.9
MSTRG.18394 Avicennia marina HOM05D000032 ORTHO05D009383 9.1e-11 72.4 52 63.5
CARHR074860 Cardamine hirsuta HOM05D000032 ORTHO05D009383 9.1e-11 72.4 54 59.3
Glyma.02G068300 Glycine max HOM05D000032 ORTHO05D009383 9.1e-11 72.4 51 62.7
Glyma.16G149800 Glycine max HOM05D000032 ORTHO05D009383 9.1e-11 72.4 54 61.1
SGA_v2.0_scaffold8G04635 Striga asiatica HOM05D000032 ORTHO05D009383 9.1e-11 72.4 64 51.6
PSO384G0785 Papaver somniferum HOM05D000032 ORTHO05D009383 1.2e-10 72.0 40 75.0
vmacro21760 Vaccinium macrocarpon HOM05D000032 ORTHO05D009383 1.2e-10 72.0 51 64.7
FvH4_6g35850 Fragaria vesca HOM05D000032 ORTHO05D009383 2.0e-10 71.2 53 66.0
FAN14G3162 Fragaria x ananassa HOM05D000032 ORTHO05D009383 2.0e-10 71.2 53 66.0
FAN14G3671 Fragaria x ananassa HOM05D000032 ORTHO05D009383 2.0e-10 71.2 53 66.0
RcHm_v2.0_Chr2g0147891 Rosa chinensis HOM05D000032 ORTHO05D009383 2.0e-10 71.2 53 62.3
Aa31LG5G11250 Aethionema arabicum HOM05D000032 ORTHO05D009383 2.6e-10 70.9 48 62.5
Cpa.g.sc17.215 Carica papaya HOM05D000032 ORTHO05D009383 2.6e-10 70.9 54 59.3
Cfa010055 Carpinus fangiana HOM05D001005 ORTHO05D000836 2.6e-10 70.9 53 60.4
Cc01_g03330 Coffea canephora HOM05D000032 ORTHO05D009383 2.6e-10 70.9 60 61.7
PGR044G2709 Punica granatum HOM05D000032 ORTHO05D009383 2.6e-10 70.9 83 47.0
VMungo0464G1688 Vigna mungo HOM05D000032 ORTHO05D009383 2.6e-10 70.9 51 62.7
Atru.chr12.440 Acer truncatum HOM05D000032 ORTHO05D009383 3.5e-10 70.5 57 61.4
CDE07G0397 Ceratophyllum demersum HOM05D000032 ORTHO05D009383 3.5e-10 70.5 41 73.2
FAN02G2103 Fragaria x ananassa HOM05D000032 ORTHO05D009383 3.5e-10 70.5 46 69.6
FAN05G0348 Fragaria x ananassa HOM05D000032 ORTHO05D009383 3.5e-10 70.5 46 69.6
FAN09G2555 Fragaria x ananassa HOM05D000032 ORTHO05D009383 3.5e-10 70.5 53 66.0
Hma1.2p1_0098F.1_g048240 Hydrangea macrophylla HOM05D000032 ORTHO05D009383 3.5e-10 70.5 52 61.5
Potri.014G140100 Populus trichocarpa HOM05D000032 ORTHO05D009383 3.5e-10 70.5 51 64.7
Sp3g00020 Schrenkiella parvula HOM05D000032 ORTHO05D009383 3.5e-10 70.5 59 54.2
AagrBONN_evm.TU.Sc2ySwM_369.192 Anthoceros agrestis HOM05D000032 ORTHO05D009383 4.5e-10 70.1 62 51.6
Eucgr.K02338 Eucalyptus grandis HOM05D000032 ORTHO05D009383 4.5e-10 70.1 62 56.5
Eucgr.L03255 Eucalyptus grandis HOM05D000032 ORTHO05D009383 4.5e-10 70.1 62 56.5
Lsat_1_v5_gn_2_101321 Lactuca sativa HOM05D000032 ORTHO05D009383 4.5e-10 70.1 44 63.6
PGSC0003DMG400032150 Solanum tuberosum HOM05D000032 ORTHO05D009383 4.5e-10 70.1 58 60.3
THA.LOC104823368 Tarenaya hassleriana HOM05D000032 ORTHO05D009383 4.5e-10 70.1 48 60.4
AUR62001157 Chenopodium quinoa HOM05D000032 ORTHO05D009383 5.9e-10 69.7 56 58.9
Manes.04G096700 Manihot esculenta HOM05D000032 ORTHO05D009383 5.9e-10 69.7 51 62.7
Nn3g18407 Nelumbo nucifera HOM05D000032 ORTHO05D009383 5.9e-10 69.7 44 68.2
QL02p068178 Quercus lobata HOM05D000032 ORTHO05D009383 5.9e-10 69.7 47 68.1
Sopen01g002340 Solanum pennellii HOM05D000032 ORTHO05D009383 5.9e-10 69.7 58 58.6
TPR.G6050 Trifolium pratense HOM05D000032 ORTHO05D009383 5.9e-10 69.7 40 65.0
CsaV3_3G020080 Cucumis sativus L. HOM05D000032 ORTHO05D009383 7.7e-10 69.3 41 65.9
Lj1A470G20 Lonicera japonica HOM05D000032 ORTHO05D009383 7.7e-10 69.3 61 57.4
Lj1A478G35 Lonicera japonica HOM05D000032 ORTHO05D009383 7.7e-10 69.3 61 57.4
Pp3c8_12050 Physcomitrium patens HOM05D000032 ORTHO05D009383 7.7e-10 69.3 44 63.6
Ah.15g094020 Amaranthus hybridus HOM05D000032 ORTHO05D009383 1.0e-09 68.9 52 61.5
AUR62016519 Chenopodium quinoa HOM05D000032 ORTHO05D009383 1.0e-09 68.9 57 57.9
Ciclev10017882m.g Citrus clementina HOM05D000032 ORTHO05D009383 1.0e-09 68.9 58 56.9
Lj3g0015614 Lotus japonicus HOM05D000032 ORTHO05D009383 1.0e-09 68.9 51 60.8
AL3G10020 Arabidopsis lyrata HOM05D000032 ORTHO05D009383 1.3e-09 68.6 47 61.7
Ca_04506_v3 Cicer arietinum L. HOM05D000032 ORTHO05D009383 1.3e-09 68.6 51 56.9
Sc14g0008440 Simmondsia chinensis HOM05D000032 ORTHO05D009383 1.3e-09 68.6 41 68.3
arahy.Tifrunner.gnm1.ann1.8UB6M3 Arachis hypogaea HOM05D000032 ORTHO05D009383 1.7e-09 68.2 58 56.9
EL10Ac7g17945 Beta vulgaris HOM05D000032 ORTHO05D009383 1.7e-09 68.2 52 63.5
HanXRQChr14g0453351 Helianthus annuus HOM05D000032 ORTHO05D009383 1.7e-09 68.2 40 65.0
MBI11_g17278_MAGBIO Magnolia biondii HOM05D000032 ORTHO05D009383 1.7e-09 68.2 51 62.7
Medtr6g033070 Medicago truncatula HOM05D000032 ORTHO05D009383 1.7e-09 68.2 40 62.5
Prupe.3G315400 Prunus persica HOM05D001005 ORTHO05D000836 1.7e-09 68.2 53 60.4
Solyc01g006340.3 Solanum lycopersicum HOM05D000032 ORTHO05D009383 1.7e-09 68.2 46 65.2
ATR0824G065 Amborella trichopoda HOM05D000032 ORTHO05D009383 2.2e-09 67.8 58 58.6
MD17G1003800 Malus domestica HOM05D000032 ORTHO05D009383 2.9e-09 67.4 46 67.4
PSO339G1569 Papaver somniferum HOM05D000032 ORTHO05D009383 2.9e-09 67.4 51 60.8
Sabra14G0105500 Salix brachista HOM05D000032 ORTHO05D009383 2.9e-09 67.4 51 62.7
arahy.Tifrunner.gnm1.ann1.BLPY9G Arachis hypogaea HOM05D007638 ORTHO05D009383 3.8e-09 67.0 51 60.8
Psat1g014560 Pisum sativum HOM05D000032 ORTHO05D009383 3.8e-09 67.0 61 52.5
TAR633G1362 Trochodendron aralioides HOM05D000032 ORTHO05D009383 3.8e-09 67.0 40 70.0
CSS0041058 Camellia sinensis var. sinensis HOM05D007638 ORTHO05D009805 5.0e-09 66.6 116 37.1
CiPaw.14G093500 Carya illinoinensis HOM05D000032 ORTHO05D009383 5.0e-09 66.6 44 63.6
Peaxi162Scf00192g00012 Petunia axillaris HOM05D000032 ORTHO05D009383 5.0e-09 66.6 46 67.4
COL.COLO4_13406 Corchorus olitorius HOM05D000032 ORTHO05D009383 6.5e-09 66.2 41 68.3
Thhalv10020567m.g Eutrema salsugineum HOM05D000032 ORTHO05D009383 6.5e-09 66.2 47 59.6
Thecc.04G052100 Theobroma cacao HOM05D000032 ORTHO05D009383 6.5e-09 66.2 44 63.6
TWI32G0219 Tripterygium wilfordii HOM05D000032 ORTHO05D009383 6.5e-09 66.2 45 62.2
Mapoly0135s0036 Marchantia polymorpha HOM05D000032 ORTHO05D009383 8.5e-09 65.9 82 37.8
Nitab4.5_0003436g0100 Nicotiana tabacum HOM05D000032 ORTHO05D009383 8.5e-09 65.9 46 67.4
AT3G02065 Arabidopsis thaliana HOM05D000032 ORTHO05D009383 1.1e-08 65.5 47 59.6
Duzib187G1127 Durio zibethinus HOM05D000032 ORTHO05D009383 1.5e-08 65.1 44 63.6
CAN.G140.9 Capsicum annuum HOM05D000032 ORTHO05D009383 1.9e-08 64.7 46 67.4
arahy.Tifrunner.gnm1.ann1.U3NDHF Arachis hypogaea HOM05D000032 ORTHO05D009383 2.5e-08 64.3 46 63.0
Gohir.D10G081800 Gossypium hirsutum HOM05D000032 ORTHO05D009383 3.2e-08 63.9 40 65.0
ECA238G2389 Erigeron canadensis HOM05D000032 ORTHO05D009383 4.2e-08 63.5 40 65.0
Gohir.A10G069700 Gossypium hirsutum HOM05D000032 ORTHO05D009383 5.5e-08 63.2 40 62.5
Gorai.011G088700 Gossypium raimondii HOM05D000032 ORTHO05D009383 5.5e-08 63.2 46 63.0
Carub.0003s0002 Capsella rubella HOM05D000032 ORTHO05D009383 9.4e-08 62.4 47 57.4
SHI50144 Sapria himalayana HOM05D000032 ORTHO05D009383 9.4e-08 62.4 56 51.8
SMO201G0222 Selaginella moellendorffii HOM05D000032 ORTHO05D009383 1.6e-07 61.6 60 45.0
CSS0012229 Camellia sinensis var. sinensis HOM05D000032 ORTHO05D009383 4.7e-07 60.1 51 60.8
Haze_14989 Corylus avellana HOM05D000032 ORTHO05D009383 1.0e-06 58.9 60 53.3


User provided reference genes

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