Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy7G00682 Aquilegia oxysepala HOM05D004324 ORTHO05D004840 4.2e-195 684.5 342 100.0
Nn1g01122 Nelumbo nucifera HOM05D004324 ORTHO05D004840 3.2e-179 631.7 342 91.5
Hma1.2p1_0442F.1_g153860 Hydrangea macrophylla HOM05D004324 ORTHO05D004840 6.8e-177 624.0 336 92.0
PSO782G5694 Papaver somniferum HOM05D004324 ORTHO05D004840 1.5e-176 622.9 342 90.6
Aa31LG9G14610 Aethionema arabicum HOM05D004324 ORTHO05D004840 1.3e-175 619.8 342 90.6
Dinv32365 Davidia involucrata HOM05D004324 ORTHO05D004840 2.2e-175 619.0 342 90.4
GSVIVG01027662001 Vitis vinifera HOM05D004324 ORTHO05D004840 3.7e-175 618.2 336 91.1
Nitab4.5_0000457g0100 Nicotiana tabacum HOM05D004324 ORTHO05D004840 4.8e-175 617.8 342 89.5
PSO478G0881 Papaver somniferum HOM05D004324 ORTHO05D004840 6.3e-175 617.5 342 90.1
MD07G1119200 Malus domestica HOM05D004324 ORTHO05D004840 8.3e-175 617.1 338 90.8
Manes.05G047100 Manihot esculenta HOM05D004324 ORTHO05D004840 1.4e-174 616.3 338 91.1
TAR375G0703 Trochodendron aralioides HOM05D004324 ORTHO05D004840 3.1e-174 615.1 342 88.9
Ciclev10021006m.g Citrus clementina HOM05D004324 ORTHO05D004840 5.4e-174 614.4 338 89.9
AL6G41660 Arabidopsis lyrata HOM05D004324 ORTHO05D004840 1.2e-173 613.2 338 89.6
Manes.01G267300 Manihot esculenta HOM05D004324 ORTHO05D004840 2.0e-173 612.5 338 89.6
Nitab4.5_0010616g0050 Nicotiana tabacum HOM05D004324 ORTHO05D004840 2.0e-173 612.5 339 89.4
Cc02_g24110 Coffea canephora HOM05D004324 ORTHO05D004840 2.7e-173 612.1 338 89.9
Cpa.g.sc145.18 Carica papaya HOM05D004324 ORTHO05D004840 3.5e-173 611.7 338 89.9
Sp6g08900 Schrenkiella parvula HOM05D004324 ORTHO05D004840 3.5e-173 611.7 338 89.1
Potri.002G146200 Populus trichocarpa HOM05D004324 ORTHO05D004840 4.5e-173 611.3 338 89.6
THA.LOC104826515 Tarenaya hassleriana HOM05D004324 ORTHO05D004840 1.0e-172 610.1 338 89.9
HanXRQChr16g0519961 Helianthus annuus HOM05D004324 ORTHO05D004840 1.3e-172 609.8 339 88.5
Peaxi162Scf00013g03018 Petunia axillaris HOM05D004324 ORTHO05D004840 1.3e-172 609.8 338 89.3
vmacro13417 Vaccinium macrocarpon HOM05D004324 ORTHO05D004840 1.3e-172 609.8 338 88.8
AT4G08900 Arabidopsis thaliana HOM05D004324 ORTHO05D004840 1.7e-172 609.4 338 88.8
EL10Ac1g00868 Beta vulgaris HOM05D004324 ORTHO05D004840 1.7e-172 609.4 342 88.9
CAN.G388.33 Capsicum annuum HOM05D004324 ORTHO05D004840 3.8e-172 608.2 341 88.0
TWI59G0845 Tripterygium wilfordii HOM05D004324 ORTHO05D004840 3.8e-172 608.2 338 89.6
Gohir.D05G254400 Gossypium hirsutum HOM05D004324 ORTHO05D004840 6.5e-172 607.4 337 89.0
Solyc01g091160.4 Solanum lycopersicum HOM05D004324 ORTHO05D004840 6.5e-172 607.4 342 87.4
Sopen01g036910 Solanum pennellii HOM05D004324 ORTHO05D004840 6.5e-172 607.4 342 87.4
Actinidia12245 Actinidia chinensis HOM05D004324 ORTHO05D004840 8.5e-172 607.1 338 89.3
BcaB01g02843 Brassica carinata HOM05D004324 ORTHO05D004840 8.5e-172 607.1 342 88.0
Carub.0006s2738 Capsella rubella HOM05D004324 ORTHO05D004840 8.5e-172 607.1 338 89.3
Gorai.009G265900 Gossypium raimondii HOM05D004324 ORTHO05D004840 8.5e-172 607.1 337 89.0
Thecc.08G173500 Theobroma cacao HOM05D004324 ORTHO05D004840 1.1e-171 606.7 336 89.6
CARHR259850 Cardamine hirsuta HOM05D004324 ORTHO05D004840 1.5e-171 606.3 338 88.5
Lsat_1_v5_gn_4_43080 Lactuca sativa HOM05D004324 ORTHO05D004840 1.5e-171 606.3 342 87.4
Potri.014G067700 Populus trichocarpa HOM05D004324 ORTHO05D004840 1.5e-171 606.3 336 89.3
Sc26g0001240 Simmondsia chinensis HOM05D004324 ORTHO05D004840 1.9e-171 605.9 342 88.6
Atru.chr5.282 Acer truncatum HOM05D004324 ORTHO05D004840 3.2e-171 605.1 338 89.6
Prupe.2G142300 Prunus persica HOM05D004324 ORTHO05D004840 3.2e-171 605.1 338 88.2
RcHm_v2.0_Chr1g0349771 Rosa chinensis HOM05D004324 ORTHO05D004840 4.2e-171 604.7 338 89.1
ECA234G2725 Erigeron canadensis HOM05D004324 ORTHO05D004840 5.5e-171 604.4 342 87.4
FAN01G0081 Fragaria x ananassa HOM05D004324 ORTHO05D004840 5.5e-171 604.4 337 89.3
Migut.B01616 Erythranthe guttata HOM05D004324 ORTHO05D004840 7.2e-171 604.0 338 88.2
FAN03G2758 Fragaria x ananassa HOM05D004324 ORTHO05D004840 7.2e-171 604.0 337 89.3
FAN06G1729 Fragaria x ananassa HOM05D004324 ORTHO05D004840 7.2e-171 604.0 337 89.3
FAN06G4220 Fragaria x ananassa HOM05D004324 ORTHO05D004840 7.2e-171 604.0 337 89.3
MSTRG.17174 Avicennia marina HOM05D004324 ORTHO05D004840 9.5e-171 603.6 343 86.9
PGR042G0702 Punica granatum HOM05D004324 ORTHO05D004840 9.5e-171 603.6 338 88.2
Rhsim07G0029000 Rhododendron simsii HOM05D004324 ORTHO05D004840 1.6e-170 602.8 361 84.2
CANSAT56G0022 Cannabis sativa HOM05D004324 ORTHO05D004840 2.1e-170 602.4 340 87.9
A03p28290 Brassica napus HOM05D004324 ORTHO05D004840 2.8e-170 602.1 340 87.1
Duzib177G0253 Durio zibethinus HOM05D004324 ORTHO05D004840 2.8e-170 602.1 338 87.9
Duzib268G1605 Durio zibethinus HOM05D004324 ORTHO05D004840 2.8e-170 602.1 338 88.2
C03p34220 Brassica napus HOM05D004324 ORTHO05D004840 4.7e-170 601.3 342 86.5
BraA03t12035Z Brassica rapa HOM05D004324 ORTHO05D004840 4.7e-170 601.3 340 87.1
QL08p052832 Quercus lobata HOM05D004324 ORTHO05D004840 4.7e-170 601.3 337 88.7
BcaC01g04748 Brassica carinata HOM05D004324 ORTHO05D004840 1.0e-169 600.1 342 86.5
BolC3t15731H Brassica oleracea HOM05D004324 ORTHO05D004840 1.0e-169 600.1 342 86.3
CiPaw.01G263900 Carya illinoinensis HOM05D004324 ORTHO05D004840 1.8e-169 599.4 338 87.9
COL.COLO4_24610 Corchorus olitorius HOM05D004324 ORTHO05D004840 2.3e-169 599.0 336 88.4
SalBow5G2819 Salvia bowleyana HOM05D004324 ORTHO05D004840 2.3e-169 599.0 338 87.9
SGA_v2.0_scaffold153G36989 Striga asiatica HOM05D004324 ORTHO05D004840 4.4e-168 594.7 342 86.8
DCAR_008551 Daucus carota HOM05D004324 ORTHO05D004840 7.5e-168 594.0 327 89.9
Hund27368 Selenicereus undatus HOM05D004324 ORTHO05D004840 7.5e-168 594.0 331 88.8
Eucgr.E01445 Eucalyptus grandis HOM05D004324 ORTHO05D004840 1.7e-167 592.8 337 87.2
CDE04G0300 Ceratophyllum demersum HOM05D004324 ORTHO05D004840 3.7e-167 591.7 330 88.2
Oeu055504.4 Olea europaea HOM05D004324 ORTHO05D004840 1.4e-166 589.7 375 80.8
SHI13535 Sapria himalayana HOM05D004324 ORTHO05D004840 1.4e-166 589.7 337 86.9
HPP92_007375 Vanilla planifolia HOM05D004324 ORTHO05D004840 1.8e-166 589.3 335 85.7
CSS0002473 Camellia sinensis var. sinensis HOM05D004324 ORTHO05D004840 4.5e-165 584.7 315 90.8
Lj3g0015076 Lotus japonicus HOM05D004324 ORTHO05D004840 4.5e-165 584.7 337 84.9
Thecc.08G173700 Theobroma cacao HOM05D004324 ORTHO05D004840 4.5e-165 584.7 336 85.1
ATR0665G432 Amborella trichopoda HOM05D004324 ORTHO05D004840 5.9e-165 584.3 336 86.0
ClCG06G000480 Citrullus lanatus HOM05D004324 ORTHO05D004840 5.9e-165 584.3 338 85.5
AUR62013655 Chenopodium quinoa HOM05D004324 ORTHO05D004840 5.0e-164 581.3 342 82.5
Thhalv10028793m.g Eutrema salsugineum HOM05D004324 ORTHO05D004840 6.6e-164 580.9 342 85.7
Ca_19938_v3 Cicer arietinum L. HOM05D004324 ORTHO05D004840 1.1e-163 580.1 337 85.5
Lalb_Chr12g0208141 Lupinus albus HOM05D004324 ORTHO05D004840 1.1e-163 580.1 336 85.7
unitig_899.g15094 Utricularia gibba HOM05D004324 ORTHO05D004840 1.5e-163 579.7 327 87.2
CsaV3_6G006290 Cucumis sativus L. HOM05D004324 ORTHO05D004840 1.9e-163 579.3 338 84.6
Os04g0106300 Oryza sativa ssp. japonica HOM05D004324 ORTHO05D004840 2.5e-163 578.9 339 84.7
Sc26g0001250 Simmondsia chinensis HOM05D004324 ORTHO05D004840 7.3e-163 577.4 342 84.8
TPR.G7599 Trifolium pratense HOM05D004324 ORTHO05D004840 2.8e-162 575.5 337 84.3
RcHm_v2.0_Chr1g0349751 Rosa chinensis HOM05D004324 ORTHO05D004840 3.6e-162 575.1 337 85.5
Sed0016777 Sechium edule HOM05D004324 ORTHO05D004840 6.1e-162 574.3 338 84.0
CSS0015452 Camellia sinensis var. sinensis HOM05D004324 ORTHO05D004840 8.0e-162 573.9 338 84.0
CSS0042374 Camellia sinensis var. sinensis HOM05D004324 ORTHO05D004840 8.0e-162 573.9 338 84.0
AUR62004190 Chenopodium quinoa HOM05D004324 ORTHO05D004840 1.0e-161 573.5 342 81.3
Solyc01g091170.3 Solanum lycopersicum HOM05D004324 ORTHO05D004840 8.9e-161 570.5 342 82.2
Sopen01g036920 Solanum pennellii HOM05D004324 ORTHO05D004840 8.9e-161 570.5 342 82.2
Psat0s3070g0160 Pisum sativum HOM05D004324 ORTHO05D004840 2.6e-160 568.9 337 82.5
AT4G08870 Arabidopsis thaliana HOM05D004324 ORTHO05D004840 3.4e-160 568.5 345 80.6
Phvul.010G081600 Phaseolus vulgaris HOM05D004324 ORTHO05D004840 3.4e-160 568.5 337 84.3
Glyma.01G140200 Glycine max HOM05D004324 ORTHO05D004840 5.7e-160 567.8 337 84.0
Glyma.17G131300 Glycine max HOM05D004324 ORTHO05D004840 6.4e-159 564.3 337 84.0
CiPaw.02G169300 Carya illinoinensis HOM05D004324 ORTHO05D004840 8.3e-159 563.9 327 84.7
arahy.Tifrunner.gnm1.ann1.2VF8XD Arachis hypogaea HOM05D004324 ORTHO05D004840 7.0e-158 560.8 368 77.4
Carub.0006s2736 Capsella rubella HOM05D004324 ORTHO05D004840 5.9e-157 557.8 345 78.6
Haze_16793 Corylus avellana HOM05D004324 ORTHO05D004840 1.5e-155 553.1 355 79.7
SEGI_09298 Sequoiadendron giganteum HOM05D004324 ORTHO05D004840 4.3e-155 551.6 342 79.2
arahy.Tifrunner.gnm1.ann1.J6F3FE Arachis hypogaea HOM05D004324 ORTHO05D004840 4.7e-154 548.1 392 72.7
Lj3g0002034 Lotus japonicus HOM05D004324 ORTHO05D004840 3.7e-151 538.5 337 78.0
Mapoly0082s0038 Marchantia polymorpha HOM05D004324 ORTHO05D004840 6.4e-151 537.7 322 80.4
Lj3g0008609 Lotus japonicus HOM05D004324 ORTHO05D004840 5.4e-150 534.6 337 78.6
SMO367G0287 Selaginella moellendorffii HOM05D004324 ORTHO05D004840 1.7e-148 529.6 323 79.9
Ah.05g174550 Amaranthus hybridus HOM05D004324 ORTHO05D004840 3.6e-146 521.9 337 75.4
Medtr4g024960 Medicago truncatula HOM05D004324 ORTHO05D004840 3.6e-146 521.9 337 75.7
Lj7A531T56 Lonicera japonica HOM05D004324 ORTHO05D004840 1.8e-145 519.6 338 79.3
Glyma.03G028000 Glycine max HOM05D004324 ORTHO05D004840 3.7e-143 511.9 340 72.1
Lj3g0012371 Lotus japonicus HOM05D004324 ORTHO05D004840 6.4e-143 511.1 336 75.3
TPR.G7597 Trifolium pratense HOM05D004324 ORTHO05D004840 1.1e-142 510.4 341 73.9
Pp3c5_2190 Physcomitrium patens HOM05D004324 ORTHO05D004840 1.6e-141 506.5 313 77.3
HanXRQChr16g0519941 Helianthus annuus HOM05D004324 ORTHO05D004840 2.6e-136 489.2 338 70.7
CBR_g50887 Chara braunii HOM05D004324 ORTHO05D004840 1.9e-131 473.0 312 73.4
Dinv43690 Davidia involucrata HOM05D004324 ORTHO05D004840 2.3e-124 449.5 338 71.0
Psat7g231720 Pisum sativum HOM05D004324 ORTHO05D004840 5.3e-121 438.3 319 66.8
COL.COLO4_24608 Corchorus olitorius HOM05D004324 ORTHO05D004840 3.4e-120 435.6 336 67.3
Sed0023731 Sechium edule HOM05D004324 ORTHO05D004840 6.0e-117 424.9 251 83.7
MELO3C022492.2 Cucumis melo HOM05D004324 ORTHO05D004840 1.5e-115 420.2 239 84.9
Atru.chr5.284 Acer truncatum HOM05D004324 ORTHO05D004840 1.3e-114 417.2 249 84.3
Hma1.2p1_0375F.1_g138670 Hydrangea macrophylla HOM05D004324 ORTHO05D004840 1.2e-112 410.6 245 84.1
SEGI_04392 Sequoiadendron giganteum HOM05D004324 ORTHO05D004840 4.5e-112 408.7 249 80.3
arahy.Tifrunner.gnm1.ann1.J17N2W Arachis hypogaea HOM05D004324 ORTHO05D004840 1.2e-109 400.6 330 63.9
MBI04_g35670_MAGBIO Magnolia biondii HOM05D004324 ORTHO05D004840 1.6e-109 400.2 223 90.1
FvH4_7g11450 Fragaria vesca HOM05D004324 ORTHO05D004840 1.2e-104 384.0 217 88.5
Medtr4g024940 Medicago truncatula HOM05D004324 ORTHO05D004840 1.2e-104 384.0 229 83.4
Zm00001eb418690 Zea mays HOM05D004324 ORTHO05D004840 3.8e-103 379.0 208 88.0
Psat6g218040 Pisum sativum HOM05D004324 ORTHO05D004840 2.5e-94 349.7 326 56.1
Gohir.A05G252532 Gossypium hirsutum HOM05D004324 ORTHO05D004840 3.6e-93 345.9 191 90.1
AagrBONN_evm.TU.Sc2ySwM_368.1743 Anthoceros agrestis HOM05D004324 ORTHO05D004840 1.0e-92 344.4 212 80.2
AL6G42680 Arabidopsis lyrata HOM05D004324 ORTHO05D004840 2.3e-92 343.2 194 85.1
Medtr0088s0100 Medicago truncatula HOM05D004324 ORTHO05D004840 7.7e-88 328.2 321 54.5
SGA_v2.0_scaffold11G05569 Striga asiatica HOM05D004324 ORTHO05D004840 6.5e-79 298.5 242 62.4
Sc26g0001270 Simmondsia chinensis HOM05D004324 ORTHO05D004840 2.1e-77 293.5 171 86.5
Psat6g218080 Pisum sativum HOM05D004324 ORTHO05D004840 1.2e-72 277.7 195 66.2
RcHm_v2.0_Chr1g0349761 Rosa chinensis HOM05D004324 ORTHO05D004840 1.1e-62 244.6 144 86.1
Gohir.A05G252466 Gossypium hirsutum HOM05D004324 ORTHO05D004840 3.2e-62 243.0 135 86.7
AL6G42730 Arabidopsis lyrata HOM05D004324 ORTHO05D004840 1.8e-57 227.3 151 74.2
Psat6g217960 Pisum sativum HOM05D004324 ORTHO05D004840 8.3e-50 201.8 155 62.6
CDE02G4314 Ceratophyllum demersum HOM05D004324 ORTHO05D004840 9.5e-46 188.3 148 67.6
arahy.Tifrunner.gnm1.ann1.V33WN8 Arachis hypogaea HOM05D004324 ORTHO05D004840 8.6e-39 165.2 87 88.5
Actinidia02863 Actinidia chinensis HOM05D004324 ORTHO05D004840 4.3e-38 162.9 105 80.0
MD02G1206600 Malus domestica HOM05D004324 ORTHO05D004840 2.2e-34 150.6 82 85.4
MD02G1206500 Malus domestica HOM05D004324 ORTHO05D004840 1.1e-33 148.3 74 97.3
CAN.G112.16 Capsicum annuum HOM05D004324 ORTHO05D004840 2.4e-33 147.1 92 78.3
Duzib177G0443 Durio zibethinus HOM05D004324 ORTHO05D004840 9.2e-33 145.2 101 72.3
SEGI_10460 Sequoiadendron giganteum HOM05D004324 ORTHO05D004840 6.0e-32 142.5 107 67.3
CAN.G23.23 Capsicum annuum HOM05D004324 ORTHO05D004840 1.5e-30 137.9 82 78.0
Duzib106G1980 Durio zibethinus HOM05D004324 ORTHO05D004840 4.6e-24 116.3 91 65.9
Sc26g0001260 Simmondsia chinensis HOM05D004324 ORTHO05D004840 1.0e-23 115.2 127 53.5
Actinidia02867 Actinidia chinensis HOM05D004324 ORTHO05D004840 2.5e-22 110.5 111 58.6
Actinidia31395 Actinidia chinensis HOM05D004324 ORTHO05D004840 1.1e-20 105.1 80 71.2
Prupe.7G087800 Prunus persica HOM05D004324 ORTHO05D004840 1.4e-20 104.8 124 53.2
MCO07G634 Micromonas commoda HOM05D004324 ORTHO05D004840 6.8e-20 102.4 285 30.9
Psat0s13993g0040 Pisum sativum HOM05D004324 ORTHO05D004840 1.1e-17 95.1 73 64.4
Pp3s30_709 Physcomitrium patens HOM05D004324 ORTHO05D004840 1.4e-17 94.7 234 29.1
Cfa025533 Carpinus fangiana HOM05D000146 ORTHO05D004840 3.2e-17 93.6 320 26.9
Ca_28979_v3 Cicer arietinum L. HOM05D004324 ORTHO05D004840 3.5e-16 90.1 282 30.1
Cfa023222 Carpinus fangiana HOM05D004324 ORTHO05D004840 3.9e-15 86.7 268 30.2
Prupe.2G076400 Prunus persica HOM05D004324 ORTHO05D004840 2.9e-10 70.5 53 69.8
Cfa024978 Carpinus fangiana HOM05D004324 ORTHO05D034102 6.4e-10 69.3 197 29.9
Actinidia02866 Actinidia chinensis HOM05D004324 ORTHO05D004840 1.1e-09 68.6 103 43.7
Medtr4g019730 Medicago truncatula HOM05D000814 ORTHO05D004840 2.1e-08 64.3 42 73.8
Aa31sc49G50 Aethionema arabicum HOM05D004324 ORTHO05D004840 3.0e-07 60.5 47 63.8


User provided reference genes

Program Settings