Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy7G00356 Aquilegia oxysepala HOM05D004189 ORTHO05D004092 0.0e+00 1292.3 713 100.0
Cc03_g07610 Coffea canephora HOM05D004189 ORTHO05D004092 3.3e-48 197.6 722 34.5
FAN01G1221 Fragaria x ananassa HOM05D013146 ORTHO05D004092 9.5e-48 196.1 708 30.8
Gohir.D12G259100 Gossypium hirsutum HOM05D004189 ORTHO05D004092 9.5e-48 196.1 734 31.7
Potri.012G141300 Populus trichocarpa HOM05D004189 ORTHO05D004092 8.9e-46 189.5 722 32.1
Oeu024223.1 Olea europaea HOM05D004189 ORTHO05D004092 1.2e-45 189.1 710 33.1
TAR374G0772 Trochodendron aralioides HOM05D004189 ORTHO05D004092 7.5e-45 186.4 718 33.6
Ciclev10004574m.g Citrus clementina HOM05D004189 ORTHO05D004092 2.2e-44 184.9 676 30.8
Gohir.A12G257800 Gossypium hirsutum HOM05D004189 ORTHO05D004092 4.1e-43 180.6 735 30.9
Gorai.008G277500 Gossypium raimondii HOM05D004189 ORTHO05D004092 7.0e-43 179.9 733 31.1
Lalb_Chr19g0130831 Lupinus albus HOM05D004189 ORTHO05D004092 8.6e-41 172.9 418 40.4
FAN03G0039 Fragaria x ananassa HOM05D013146 ORTHO05D004092 1.1e-40 172.6 809 29.9
RcHm_v2.0_Chr1g0377331 Rosa chinensis HOM05D013146 ORTHO05D004092 9.5e-40 169.5 495 33.7
FAN03G0716 Fragaria x ananassa HOM05D013146 ORTHO05D004092 1.6e-39 168.7 829 29.6
Sc19g0001510 Simmondsia chinensis HOM05D004189 ORTHO05D004092 3.6e-39 167.5 762 31.0
PSO478G0985 Papaver somniferum HOM05D004189 ORTHO05D004092 6.2e-39 166.8 731 33.2
Sopen03g004620 Solanum pennellii HOM05D004189 ORTHO05D004092 2.0e-37 161.8 509 31.6
MD01G1201000 Malus domestica HOM05D004189 ORTHO05D004092 2.6e-37 161.4 735 31.3
Peaxi162Scf00444g00847 Petunia axillaris HOM05D004189 ORTHO05D004092 2.6e-37 161.4 726 31.5
FAN06G1386 Fragaria x ananassa HOM05D013146 ORTHO05D004092 4.4e-37 160.6 682 29.8
Dinv28441 Davidia involucrata HOM05D004189 ORTHO05D004092 7.5e-37 159.8 752 30.2
FAN06G2021 Fragaria x ananassa HOM05D013146 ORTHO05D004092 1.3e-36 159.1 694 29.7
CAN.G490.32 Capsicum annuum HOM05D004189 ORTHO05D004092 3.7e-36 157.5 473 34.0
PGSC0003DMG400014293 Solanum tuberosum HOM05D004189 ORTHO05D004092 1.1e-35 156.0 487 32.4
Solyc03g025810.4 Solanum lycopersicum HOM05D004189 ORTHO05D004092 1.4e-35 155.6 774 27.9
vmacro06681 Vaccinium macrocarpon HOM05D004189 ORTHO05D004092 1.9e-35 155.2 556 32.0
Nitab4.5_0000716g0020 Nicotiana tabacum HOM05D004189 ORTHO05D004092 9.2e-35 152.9 492 33.5
DCAR_018199 Daucus carota HOM05D004189 ORTHO05D004092 2.7e-34 151.4 738 32.7
FAN10G2986 Fragaria x ananassa HOM05D013146 ORTHO05D004092 2.7e-34 151.4 689 31.8
Rhsim03G0180900 Rhododendron simsii HOM05D004189 ORTHO05D004092 1.0e-33 149.4 601 30.6
QL09p014207 Quercus lobata HOM05D004189 ORTHO05D004092 3.0e-33 147.9 500 31.8
Sabra15G0153700 Salix brachista HOM05D004189 ORTHO05D004092 3.0e-33 147.9 725 29.7
QL09p014192 Quercus lobata HOM05D004189 ORTHO05D004092 1.1e-32 146.0 493 31.2
Nitab4.5_0009681g0010 Nicotiana tabacum HOM05D004189 ORTHO05D004092 1.9e-32 145.2 497 32.4
arahy.Tifrunner.gnm1.ann1.E2ZRS1 Arachis hypogaea HOM05D004189 ORTHO05D004092 9.5e-32 142.9 754 27.5
arahy.Tifrunner.gnm1.ann1.EQ3RBX Arachis hypogaea HOM05D004189 ORTHO05D004092 1.2e-31 142.5 668 29.8
AUR62021191 Chenopodium quinoa HOM05D004189 ORTHO05D004092 2.1e-31 141.7 474 30.0
Glyma.16G193200 Glycine max HOM05D004189 ORTHO05D004092 4.7e-31 140.6 326 37.7
Duzib205G0656 Durio zibethinus HOM05D004189 ORTHO05D004092 4.0e-30 137.5 713 28.1
FAN10G2376 Fragaria x ananassa HOM05D013146 ORTHO05D004092 4.0e-30 137.5 761 30.4
MD07G1268800 Malus domestica HOM05D004189 ORTHO05D004092 4.0e-30 137.5 537 30.9
RcHm_v2.0_Chr1g0377291 Rosa chinensis HOM05D013146 ORTHO05D004092 6.8e-30 136.7 853 28.4
PGR042G0303 Punica granatum HOM05D004189 ORTHO05D004092 8.9e-30 136.3 762 29.0
Thecc.03G176700 Theobroma cacao HOM05D004189 ORTHO05D004092 2.6e-29 134.8 738 28.2
COL.COLO4_14310 Corchorus olitorius HOM05D004189 ORTHO05D004092 3.4e-29 134.4 438 30.8
Glyma.16G189900 Glycine max HOM05D004189 ORTHO05D004092 9.9e-29 132.9 403 34.2
AUR62015982 Chenopodium quinoa HOM05D004189 ORTHO05D004092 1.3e-28 132.5 476 30.0
Eucgr.A02790 Eucalyptus grandis HOM05D004189 ORTHO05D004092 1.3e-28 132.5 649 28.4
TWI23G0464 Tripterygium wilfordii HOM05D004189 ORTHO05D004092 2.2e-28 131.7 514 31.5
FvH4_7g29491 Fragaria vesca HOM05D013146 ORTHO05D004092 6.4e-28 130.2 363 36.4
PSO782G0005 Papaver somniferum HOM05D004189 ORTHO05D004092 6.4e-28 130.2 748 30.1
EL10Ac3g05642 Beta vulgaris HOM05D004189 ORTHO05D004092 4.1e-27 127.5 527 29.6
Nn6g33499 Nelumbo nucifera HOM05D004189 ORTHO05D004092 4.6e-26 124.0 678 30.2
Carub.0008s1240 Capsella rubella HOM05D004189 ORTHO05D004092 5.1e-25 120.6 737 26.6
Cpa.g.sc107.53 Carica papaya HOM05D004189 ORTHO05D004092 5.1e-25 120.6 688 27.3
ECA238G1803 Erigeron canadensis HOM05D004189 ORTHO05D004092 5.1e-25 120.6 689 26.4
Lj8A24G36 Lonicera japonica HOM05D004189 ORTHO05D004092 1.9e-24 118.6 416 32.0
Manes.06G147200 Manihot esculenta HOM05D004189 ORTHO05D004092 1.9e-24 118.6 660 27.6
HanXRQChr07g0207021 Helianthus annuus HOM05D004189 ORTHO05D004092 7.3e-24 116.7 681 28.6
CANSAT21G0752 Cannabis sativa HOM05D004189 ORTHO05D004092 9.5e-24 116.3 509 27.5
Thhalv10013021m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 9.5e-24 116.3 720 29.2
AT5G52300 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 1.2e-23 115.9 735 28.0
THA.LOC104811978 Tarenaya hassleriana HOM05D004189 ORTHO05D004092 2.8e-23 114.8 736 29.8
CANSAT21G0725 Cannabis sativa HOM05D004189 ORTHO05D004092 1.4e-22 112.5 510 27.5
Actinidia34113 Actinidia chinensis HOM05D004189 ORTHO05D004092 3.1e-22 111.3 566 27.2
Glyma.09G139600 Glycine max HOM05D004189 ORTHO05D004092 1.5e-21 109.0 310 37.1
CSS0007027 Camellia sinensis var. sinensis HOM05D004189 ORTHO05D004092 5.8e-21 107.1 611 28.0
CSS0002108 Camellia sinensis var. sinensis HOM05D004189 ORTHO05D004092 1.3e-20 105.9 489 30.5
arahy.Tifrunner.gnm1.ann1.06RI6S Arachis hypogaea HOM05D004189 ORTHO05D004092 2.4e-19 101.7 486 28.4
arahy.Tifrunner.gnm1.ann1.UM41MD Arachis hypogaea HOM05D004189 ORTHO05D004092 3.2e-19 101.3 251 38.2
Medtr6g045273 Medicago truncatula HOM05D004189 ORTHO05D004092 4.1e-19 100.9 257 36.6
Oeu056256.2 Olea europaea HOM05D004189 ORTHO05D004092 9.2e-19 99.8 260 33.8
AL8G26690 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 1.2e-18 99.4 713 26.4
Lsat_1_v5_gn_2_132020 Lactuca sativa HOM05D004189 ORTHO05D004092 1.2e-18 99.4 277 33.9
C02p19900 Brassica napus HOM05D004189 ORTHO05D004092 2.7e-18 98.2 731 28.7
BolC2t08123H Brassica oleracea HOM05D004189 ORTHO05D004092 2.7e-18 98.2 731 28.7
A02p11900 Brassica napus HOM05D004189 ORTHO05D004092 6.0e-18 97.1 719 27.5
TPR.G10757 Trifolium pratense HOM05D004189 ORTHO05D004092 7.8e-18 96.7 259 39.8
BcaC03g14545 Brassica carinata HOM05D004189 ORTHO05D004092 1.0e-17 96.3 723 28.9
Glyma.20G158500 Glycine max HOM05D004189 ORTHO05D004092 1.3e-17 95.9 593 28.3
Phvul.004G117100 Phaseolus vulgaris HOM05D004189 ORTHO05D004092 6.6e-17 93.6 257 35.8
Migut.F00339 Erythranthe guttata HOM05D004189 ORTHO05D004092 8.7e-17 93.2 284 34.5
Psat0s2227g0040 Pisum sativum HOM05D004189 ORTHO05D004092 8.7e-17 93.2 211 38.4
BcaB05g21946 Brassica carinata HOM05D004189 ORTHO05D004092 4.3e-16 90.9 717 26.5
Prupe.2G294400 Prunus persica HOM05D004189 ORTHO05D004092 5.6e-16 90.5 467 27.0
Glyma.16G192000 Glycine max HOM05D004189 ORTHO05D004092 1.2e-15 89.4 188 39.4
Glyma.16G192732 Glycine max HOM05D004189 ORTHO05D004092 1.2e-15 89.4 225 38.7
Lsat_1_v5_gn_8_8621 Lactuca sativa HOM05D004189 ORTHO05D004092 1.6e-15 89.0 412 26.7
Migut.F01119 Erythranthe guttata HOM05D004189 ORTHO05D004092 2.8e-15 88.2 671 24.9
Glyma.16G183700 Glycine max HOM05D004189 ORTHO05D004092 6.2e-15 87.0 225 38.2
Phvul.007G069800 Phaseolus vulgaris HOM05D004189 ORTHO05D004092 1.4e-14 85.9 151 42.4
Sp7g23610 Schrenkiella parvula HOM05D004189 ORTHO05D004092 1.4e-14 85.9 267 32.2
AT4G25580 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 1.8e-14 85.5 759 26.4
MBI18_g30543_MAGBIO Magnolia biondii HOM05D004189 ORTHO05D004092 2.4e-14 85.1 559 26.3
Glyma.16G192200 Glycine max HOM05D004189 ORTHO05D004092 4.0e-14 84.3 188 38.3
Carub.0007s1540 Capsella rubella HOM05D004189 ORTHO05D004092 5.2e-14 84.0 732 26.6
Aa31LG3G8720 Aethionema arabicum HOM05D004189 ORTHO05D004092 6.9e-14 83.6 179 37.4
arahy.Tifrunner.gnm1.ann1.4R9DEN Arachis hypogaea HOM05D001888 ORTHO05D001842 9.0e-14 83.2 539 26.9
BolC7t45929H Brassica oleracea HOM05D004189 ORTHO05D004092 1.2e-13 82.8 316 32.0
GSVIVG01028976001 Vitis vinifera HOM05D004189 ORTHO05D004092 1.2e-13 82.8 272 30.5
CARHR265280 Cardamine hirsuta HOM05D004189 ORTHO05D004092 1.5e-13 82.4 679 26.7
Lj2g0010006 Lotus japonicus HOM05D004189 ORTHO05D004092 1.5e-13 82.4 410 31.7
BraA03t14684Z Brassica rapa HOM05D004189 ORTHO05D004092 3.4e-13 81.3 316 31.6
Potri.015G143950 Populus trichocarpa HOM05D004189 ORTHO05D004092 3.4e-13 81.3 743 25.7
Sp6g14560 Schrenkiella parvula HOM05D004189 ORTHO05D004092 4.4e-13 80.9 632 26.7
THA.LOC104800253 Tarenaya hassleriana HOM05D004189 ORTHO05D004092 4.4e-13 80.9 552 27.2
A03p56110 Brassica napus HOM05D004189 ORTHO05D004092 7.6e-13 80.1 316 31.6
Ca_25745_v3 Cicer arietinum L. HOM05D004189 ORTHO05D004092 2.9e-12 78.2 413 29.5
Ah.07g207200 Amaranthus hybridus HOM05D032681 ORTHO05D004092 1.1e-11 76.3 457 27.6
CARHR233000 Cardamine hirsuta HOM05D004189 ORTHO05D004092 1.9e-11 75.5 476 25.4
Glyma.10G236000 Glycine max HOM05D004189 ORTHO05D004092 2.4e-11 75.1 477 25.8
TPR.G14322 Trifolium pratense HOM05D004189 ORTHO05D004092 3.2e-11 74.7 609 27.1
Nn1g01463 Nelumbo nucifera HOM05D004189 ORTHO05D004092 4.2e-11 74.3 238 32.8
Aa31LG7G12260 Aethionema arabicum HOM05D004189 ORTHO05D004092 7.1e-11 73.6 641 26.7
BcaC06g32799 Brassica carinata HOM05D004189 ORTHO05D004092 9.3e-11 73.2 309 31.1
VMungo0720G0841 Vigna mungo HOM05D004189 ORTHO05D004092 1.2e-10 72.8 559 25.6
C07p54440 Brassica napus HOM05D004189 ORTHO05D004092 3.5e-10 71.2 718 24.9
Nitab4.5_0003242g0020 Nicotiana tabacum HOM05D004189 ORTHO05D004092 7.8e-10 70.1 181 36.5
PSO478G0660 Papaver somniferum HOM05D057890 ORTHO05D004092 1.3e-09 69.3 468 29.9
ATR0680G076 Amborella trichopoda HOM05D004189 ORTHO05D004092 1.7e-09 68.9 560 22.9
PSO782G3290 Papaver somniferum HOM05D057890 ORTHO05D004092 1.7e-09 68.9 521 26.9
Lalb_Chr21g0305031 Lupinus albus HOM05D004189 ORTHO05D004092 2.3e-09 68.6 216 30.6
PSO478G2886 Papaver somniferum HOM05D064671 ORTHO05D004092 3.9e-09 67.8 392 26.5
ClCG09G012920 Citrullus lanatus HOM05D004189 ORTHO05D004092 6.6e-09 67.0 492 27.8
Medtr1g100627 Medicago truncatula HOM05D004189 ORTHO05D004092 6.6e-09 67.0 689 26.4
BraA03t10863Z Brassica rapa HOM05D004189 ORTHO05D004092 1.1e-08 66.2 711 26.0
Ca_10770_v3 Cicer arietinum L. HOM05D004189 ORTHO05D004092 1.5e-08 65.9 588 28.1
Zm00001eb044080 Zea mays HOM05D036983 ORTHO05D037006 1.5e-08 65.9 397 24.7
Lj5g0019959 Lotus japonicus HOM05D004189 ORTHO05D004092 1.9e-08 65.5 873 22.9
PSO782G3516 Papaver somniferum HOM05D064671 ORTHO05D004092 3.3e-08 64.7 313 26.8
Os10g0505900 Oryza sativa ssp. japonica HOM05D036983 ORTHO05D037006 5.6e-08 63.9 116 42.2
Peaxi162Scf00234g00811 Petunia axillaris HOM05D004189 ORTHO05D004092 9.6e-08 63.2 160 33.8
CiPaw.03G106300 Carya illinoinensis HOM05D004189 ORTHO05D004092 1.3e-07 62.8 373 26.3
Cfa008320 Carpinus fangiana HOM05D004189 ORTHO05D004092 1.6e-07 62.4 546 24.5
MELO3C003321.2 Cucumis melo HOM05D004189 ORTHO05D004092 1.6e-07 62.4 401 27.2
BcaB01g04200 Brassica carinata HOM05D004189 ORTHO05D004092 3.6e-07 61.2 761 27.1
A03p15730 Brassica napus HOM05D004189 ORTHO05D004092 6.2e-07 60.5 767 27.4
THA.LOC104799430 Tarenaya hassleriana HOM05D006297 ORTHO05D007873 8.1e-07 60.1 238 28.6
A08p21090 Brassica napus HOM05D002154 ORTHO05D002362 2.4e-06 58.5 107 38.3
Nitab4.5_0002721g0060 Nicotiana tabacum HOM05D004189 ORTHO05D004092 5.3e-06 57.4 178 32.6


User provided reference genes

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