Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy7G00304 Aquilegia oxysepala HOM05D005648 ORTHO05D007357 6.1e-225 783.9 407 100.0
TAR375G0141 Trochodendron aralioides HOM05D005648 ORTHO05D007357 1.2e-108 397.5 417 55.6
QL08p048767 Quercus lobata HOM05D005648 ORTHO05D007357 1.8e-91 340.5 416 50.5
Dinv32486 Davidia involucrata HOM05D005648 ORTHO05D007357 2.0e-87 327.0 408 49.0
Manes.05G034000 Manihot esculenta HOM05D005648 ORTHO05D007357 2.7e-87 326.6 417 50.6
Nn1g01539 Nelumbo nucifera HOM05D005648 ORTHO05D007357 2.7e-87 326.6 403 50.6
TWI23G0553 Tripterygium wilfordii HOM05D005648 ORTHO05D007357 4.5e-87 325.9 413 47.9
Potri.014G084800 Populus trichocarpa HOM05D005648 ORTHO05D007357 3.6e-84 316.2 416 48.1
Thecc.01G358800 Theobroma cacao HOM05D005648 ORTHO05D007357 3.6e-84 316.2 417 47.5
TAR629G3222 Trochodendron aralioides HOM05D005648 ORTHO05D007357 4.7e-84 315.8 314 59.9
Manes.01G256501 Manihot esculenta HOM05D005648 ORTHO05D007357 8.0e-84 315.1 419 46.8
Potri.002G160100 Populus trichocarpa HOM05D005648 ORTHO05D007357 8.0e-84 315.1 417 47.5
COL.COLO4_12714 Corchorus olitorius HOM05D005648 ORTHO05D007357 1.4e-83 314.3 391 49.9
Gohir.A08G131300 Gossypium hirsutum HOM05D005648 ORTHO05D007357 4.0e-83 312.8 417 47.0
Sabra14G0061500 Salix brachista HOM05D005648 ORTHO05D007357 4.0e-83 312.8 443 46.0
Gorai.004G158700 Gossypium raimondii HOM05D005648 ORTHO05D007357 2.6e-82 310.1 417 46.8
Migut.B01757 Erythranthe guttata HOM05D005648 ORTHO05D007357 7.5e-82 308.5 423 46.3
Prupe.2G170800 Prunus persica HOM05D005648 ORTHO05D007357 3.7e-81 306.2 424 47.9
Oeu010615.1 Olea europaea HOM05D005648 ORTHO05D007357 1.8e-80 303.9 422 47.2
Rhsim01G0157500 Rhododendron simsii HOM05D005648 ORTHO05D007357 7.0e-80 302.0 384 48.2
Haze_07444 Corylus avellana HOM05D005648 ORTHO05D007357 1.6e-79 300.8 399 48.4
MSTRG.20835 Avicennia marina HOM05D005648 ORTHO05D007357 5.9e-79 298.9 421 46.3
Duzib133G0061 Durio zibethinus HOM05D005648 ORTHO05D007357 7.7e-79 298.5 426 46.7
Dinv43819 Davidia involucrata HOM05D005648 ORTHO05D007357 5.0e-78 295.8 415 46.5
MBI18_g45368_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 1.9e-77 293.9 276 62.0
GSVIVG01026935001 Vitis vinifera HOM05D005648 ORTHO05D007357 2.5e-77 293.5 412 47.1
MD01G1061000 Malus domestica HOM05D005648 ORTHO05D007357 5.5e-77 292.4 420 46.0
PGR031G0771 Punica granatum HOM05D005648 ORTHO05D007357 5.5e-77 292.4 429 44.8
PSO478G0111 Papaver somniferum HOM05D005648 ORTHO05D007357 6.1e-76 288.9 414 44.7
Gohir.D08G152800 Gossypium hirsutum HOM05D005648 ORTHO05D007357 3.0e-75 286.6 381 46.7
ATR0680G381 Amborella trichopoda HOM05D005648 ORTHO05D007357 7.5e-74 282.0 428 44.6
Sed0027842 Sechium edule HOM05D005648 ORTHO05D007357 3.7e-73 279.6 420 43.6
Lsat_1_v5_gn_4_36080 Lactuca sativa HOM05D005648 ORTHO05D007357 7.0e-72 275.4 430 43.0
RcHm_v2.0_Chr1g0355291 Rosa chinensis HOM05D005648 ORTHO05D007357 2.0e-71 273.9 477 40.0
FvH4_7g14300 Fragaria vesca HOM05D005648 ORTHO05D007357 1.0e-70 271.6 474 42.6
Atru.chr5.500 Acer truncatum HOM05D005648 ORTHO05D007357 1.7e-70 270.8 335 48.1
FAN06G4900 Fragaria x ananassa HOM05D005648 ORTHO05D007357 5.0e-70 269.2 474 42.2
DCAR_006931 Daucus carota HOM05D005648 ORTHO05D007357 1.1e-69 268.1 425 44.5
CDE04G3514 Ceratophyllum demersum HOM05D005648 ORTHO05D007357 4.3e-69 266.2 443 43.1
CiPaw.11G030900 Carya illinoinensis HOM05D005648 ORTHO05D007357 9.5e-69 265.0 417 43.4
Rhsim01G0157000 Rhododendron simsii HOM05D005648 ORTHO05D007357 9.5e-69 265.0 384 43.2
FAN10G1032 Fragaria x ananassa HOM05D005648 ORTHO05D007357 1.5e-66 257.7 466 42.1
FAN06G1011 Fragaria x ananassa HOM05D005648 ORTHO05D007357 2.6e-66 256.9 466 42.1
MBI18_g44363_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 1.3e-65 254.6 252 60.3
FAN01G1827 Fragaria x ananassa HOM05D005648 ORTHO05D007357 2.2e-65 253.8 468 40.8
Solyc01g094650.4 Solanum lycopersicum HOM05D005648 ORTHO05D007357 1.9e-64 250.8 452 39.4
MD07G1136800 Malus domestica HOM05D005648 ORTHO05D007357 2.4e-64 250.4 403 43.7
Sopen01g038460 Solanum pennellii HOM05D005648 ORTHO05D007357 3.2e-64 250.0 459 39.4
HPP92_008491 Vanilla planifolia HOM05D005648 ORTHO05D007357 4.1e-64 249.6 419 40.8
Glyma.07G070400 Glycine max HOM05D005648 ORTHO05D007357 1.6e-63 247.7 413 44.1
VMungo0331G0956 Vigna mungo HOM05D005648 ORTHO05D007357 1.6e-63 247.7 429 42.4
Aa31LG1G11030 Aethionema arabicum HOM05D005648 ORTHO05D007357 2.7e-63 246.9 444 38.5
Cfa019074 Carpinus fangiana HOM05D005648 ORTHO05D007357 4.6e-63 246.1 309 48.5
Lj3g0021061 Lotus japonicus HOM05D005648 ORTHO05D007357 1.7e-62 244.2 419 44.2
Peaxi162Scf00020g00424 Petunia axillaris HOM05D005648 ORTHO05D007357 3.0e-62 243.4 464 39.2
CAN.G78.81 Capsicum annuum HOM05D005648 ORTHO05D007357 6.6e-62 242.3 417 40.8
AT1G01690 Arabidopsis thaliana HOM05D005648 ORTHO05D007357 1.9e-61 240.7 470 38.5
THA.LOC104825838 Tarenaya hassleriana HOM05D005648 ORTHO05D007357 1.9e-61 240.7 450 38.2
Cpa.g.sc11.6 Carica papaya HOM05D005648 ORTHO05D007357 1.2e-60 238.0 284 51.1
Ciclev10024354m.g Citrus clementina HOM05D005648 ORTHO05D007357 1.2e-60 238.0 262 56.5
ECA234G0615 Erigeron canadensis HOM05D005648 ORTHO05D007357 2.1e-60 237.3 417 38.8
Carub.0001s0053 Capsella rubella HOM05D005648 ORTHO05D007357 3.6e-60 236.5 468 37.4
Actinidia12702 Actinidia chinensis HOM05D005648 ORTHO05D007357 8.0e-60 235.3 262 51.1
AL1G10680 Arabidopsis lyrata HOM05D005648 ORTHO05D007357 8.0e-60 235.3 469 37.5
Sp1g00620 Schrenkiella parvula HOM05D005648 ORTHO05D007357 1.8e-59 234.2 429 38.2
Glyma.03G008900 Glycine max HOM05D005648 ORTHO05D007357 7.5e-58 228.8 366 44.0
Thhalv10007771m.g Eutrema salsugineum HOM05D005648 ORTHO05D007357 9.8e-58 228.4 435 37.5
Actinidia33418 Actinidia chinensis HOM05D005648 ORTHO05D007357 1.7e-57 227.6 358 41.3
Cc02_g38050 Coffea canephora HOM05D005648 ORTHO05D007357 1.7e-57 227.6 418 39.7
Nitab4.5_0006762g0020 Nicotiana tabacum HOM05D005648 ORTHO05D007357 2.2e-57 227.3 422 38.6
Phvul.010G099300 Phaseolus vulgaris HOM05D005648 ORTHO05D007357 4.9e-57 226.1 440 41.6
Eucgr.D02293 Eucalyptus grandis HOM05D005648 ORTHO05D007357 5.4e-56 222.6 268 49.3
CARHR000670 Cardamine hirsuta HOM05D005648 ORTHO05D007357 4.6e-55 219.5 470 35.1
AUR62004360 Chenopodium quinoa HOM05D005648 ORTHO05D007357 3.9e-54 216.5 408 39.2
SGA_v2.0_scaffold4G02313 Striga asiatica HOM05D005648 ORTHO05D007357 6.6e-54 215.7 388 40.5
Peaxi162Scf00020g00041 Petunia axillaris HOM05D005648 ORTHO05D007357 4.7e-52 209.5 410 39.8
HanXRQChr16g0522761 Helianthus annuus HOM05D005648 ORTHO05D007357 6.8e-51 205.7 379 38.3
Nitab4.5_0000583g0110 Nicotiana tabacum HOM05D005648 ORTHO05D007357 2.0e-50 204.1 367 40.3
arahy.Tifrunner.gnm1.ann1.B5LD0B Arachis hypogaea HOM05D005648 ORTHO05D007357 5.8e-50 202.6 413 39.2
FAN03G1082 Fragaria x ananassa HOM05D005648 ORTHO05D007357 2.4e-48 197.2 220 55.0
Psat4g155800 Pisum sativum HOM05D005648 ORTHO05D007357 7.1e-48 195.7 284 45.4
Duzib133G1405 Durio zibethinus HOM05D005648 ORTHO05D007357 7.8e-47 192.2 229 51.1
BolC7t43677H Brassica oleracea HOM05D005648 ORTHO05D007357 1.0e-46 191.8 470 33.8
Sc23g0002870 Simmondsia chinensis HOM05D005648 ORTHO05D007357 3.0e-46 190.3 421 35.4
Lalb_Chr17g0339581 Lupinus albus HOM05D005648 ORTHO05D007357 5.1e-46 189.5 400 37.5
BcaC06g34230 Brassica carinata HOM05D005648 ORTHO05D007357 1.1e-45 188.3 475 33.5
Medtr8g030730 Medicago truncatula HOM05D005648 ORTHO05D007357 1.5e-45 188.0 391 38.4
BolC5t28826H Brassica oleracea HOM05D005648 ORTHO05D007357 1.9e-45 187.6 441 35.4
A06p44840 Brassica napus HOM05D005648 ORTHO05D007357 2.1e-44 184.1 432 32.6
BraA06t27356Z Brassica rapa HOM05D005648 ORTHO05D007357 2.1e-44 184.1 439 32.6
BraA10t42311Z Brassica rapa HOM05D005648 ORTHO05D007357 2.8e-44 183.7 447 35.1
PGSC0003DMG400000173 Solanum tuberosum HOM05D005648 ORTHO05D007357 3.6e-44 183.3 198 55.6
arahy.Tifrunner.gnm1.ann1.SJPY5G Arachis hypogaea HOM05D005648 ORTHO05D007357 2.4e-43 180.6 256 47.3
EL10Ac7g16797 Beta vulgaris HOM05D005648 ORTHO05D007357 2.4e-43 180.6 416 35.3
A10p00320 Brassica napus HOM05D003351 ORTHO05D003806 6.8e-43 179.1 425 35.1
TPR.G10304 Trifolium pratense HOM05D005648 ORTHO05D007357 6.8e-43 179.1 412 35.7
MELO3C006108.2 Cucumis melo HOM05D005648 ORTHO05D007357 3.4e-42 176.8 261 42.9
C05p00330 Brassica napus HOM05D003351 ORTHO05D003806 5.8e-42 176.0 427 35.1
ClCG05G001510 Citrullus lanatus HOM05D005648 ORTHO05D007357 4.9e-41 172.9 413 35.1
Lalb_Chr10g0096911 Lupinus albus HOM05D005648 ORTHO05D007357 4.9e-41 172.9 271 42.8
C07p31360 Brassica napus HOM05D005648 ORTHO05D008650 6.4e-41 172.6 441 31.5
Ca_23631_v3 Cicer arietinum L. HOM05D005648 ORTHO05D007357 2.1e-39 167.5 429 37.1
CsaV3_3G008890 Cucumis sativus L. HOM05D003539 ORTHO05D004111 4.6e-39 166.4 383 32.9
arahy.Tifrunner.gnm1.ann1.79VNNQ Arachis hypogaea HOM05D005648 ORTHO05D007357 7.3e-37 159.1 271 41.0
CSS0007131 Camellia sinensis var. sinensis HOM05D005648 ORTHO05D007357 2.6e-34 150.6 331 32.9
Zm00001eb404350 Zea mays HOM05D005648 ORTHO05D007357 3.8e-33 146.7 320 37.8
MBI06_g29680_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 6.4e-33 146.0 133 66.9
AUR62022570 Chenopodium quinoa HOM05D005648 ORTHO05D007357 2.1e-31 141.0 325 32.0
BcaC06g31348 Brassica carinata HOM05D005648 ORTHO05D007357 2.7e-31 140.6 468 28.4
Zm00001eb000540 Zea mays HOM05D005648 ORTHO05D007357 3.5e-31 140.2 318 36.8
Ah.05g180590 Amaranthus hybridus HOM05D005648 ORTHO05D007357 6.0e-31 139.4 438 31.1
MBI18_g40590_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 5.1e-30 136.3 251 36.7
Os03g0106300 Oryza sativa ssp. japonica HOM05D005648 ORTHO05D007357 1.8e-27 127.9 258 37.2
unitig_26.g9738 Utricularia gibba HOM05D005648 ORTHO05D007357 1.8e-27 127.9 281 35.6
QL08p048682 Quercus lobata HOM05D005648 ORTHO05D007357 6.9e-27 125.9 116 57.8
vmacro20940 Vaccinium macrocarpon HOM05D005648 ORTHO05D007357 9.0e-27 125.6 145 53.1
SHI13451 Sapria himalayana HOM05D005648 ORTHO05D007357 1.2e-26 125.2 254 33.5
MBI01_g12685_MAGBIO Magnolia biondii HOM05D000532 ORTHO05D007357 2.9e-25 120.6 94 63.8
MBI18_g42710_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 1.9e-21 107.8 89 59.6
MBI17_g41096_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 1.5e-18 98.2 71 64.8
arahy.Tifrunner.gnm1.ann1.QHU48Z Arachis hypogaea HOM05D005648 ORTHO05D007357 3.4e-18 97.1 130 44.6
MBI19_g11759_MAGBIO Magnolia biondii HOM05D000532 ORTHO05D002414 2.5e-16 90.9 75 62.7
BcaB03g13607 Brassica carinata HOM05D003351 ORTHO05D003806 9.3e-16 89.0 413 29.1
MBI06_g27427_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 9.3e-16 89.0 74 62.2
CSS0016999 Camellia sinensis var. sinensis HOM05D005648 ORTHO05D007357 1.3e-14 85.1 80 65.0
CSS0009989 Camellia sinensis var. sinensis HOM05D005648 ORTHO05D007357 3.9e-14 83.6 111 43.2
vmacro20941 Vaccinium macrocarpon HOM05D005648 ORTHO05D007357 2.0e-10 71.2 128 30.5
SalBow3G1978 Salvia bowleyana HOM05D005648 ORTHO05D007357 3.4e-10 70.5 81 55.6
MBI12_g03930_MAGBIO Magnolia biondii HOM05D000084 ORTHO05D014274 7.6e-10 69.3 62 69.4
SHI13452 Sapria himalayana HOM05D005648 ORTHO05D007357 1.7e-09 68.2 96 46.9
Ciclev10024524m.g Citrus clementina HOM05D005648 ORTHO05D007357 2.5e-08 64.3 58 56.9
Eucgr.D02411 Eucalyptus grandis HOM05D005648 ORTHO05D029324 9.3e-08 62.4 94 40.4
Eucgr.D02400 Eucalyptus grandis HOM05D005648 ORTHO05D029324 2.7e-07 60.8 126 33.3
FAN10G0802 Fragaria x ananassa HOM05D005648 ORTHO05D007357 2.7e-07 60.8 80 55.0


User provided reference genes

Program Settings