Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy7G00303 Aquilegia oxysepala HOM05D004859 ORTHO05D005807 3.6e-58 228.0 113 100.0
DCAR_024584 Daucus carota HOM05D004859 ORTHO05D005807 6.3e-47 190.7 107 87.9
TAR629G2726 Trochodendron aralioides HOM05D004859 ORTHO05D005807 7.0e-46 187.2 107 84.1
PSO675G0300 Papaver somniferum HOM05D004859 ORTHO05D005807 1.6e-45 186.0 107 84.1
PSO675G8596 Papaver somniferum HOM05D004859 ORTHO05D005807 1.6e-45 186.0 107 84.1
Sc16g0010390 Simmondsia chinensis HOM05D004859 ORTHO05D005807 2.0e-45 185.7 107 81.3
Hma1.2p1_0171F.1_g075510 Hydrangea macrophylla HOM05D004859 ORTHO05D005807 2.7e-45 185.3 107 85.0
Sc06g0005050 Simmondsia chinensis HOM05D004859 ORTHO05D005807 3.5e-45 184.9 107 81.3
Lalb_Chr01g0020391 Lupinus albus HOM05D004859 ORTHO05D005807 5.9e-45 184.1 107 80.4
Rhsim09G0129900 Rhododendron simsii HOM05D004859 ORTHO05D005807 1.3e-44 183.0 110 80.0
Cfa006265 Carpinus fangiana HOM05D004859 ORTHO05D005807 2.9e-44 181.8 107 82.2
Glyma.09G250600 Glycine max HOM05D004859 ORTHO05D005807 2.9e-44 181.8 107 79.4
Lalb_Chr03g0038491 Lupinus albus HOM05D004859 ORTHO05D005807 3.8e-44 181.4 107 78.5
Lj1g0018632 Lotus japonicus HOM05D004859 ORTHO05D005807 5.0e-44 181.0 107 80.4
PGR031G2676 Punica granatum HOM05D004859 ORTHO05D005807 5.0e-44 181.0 107 80.4
DCAR_029983 Daucus carota HOM05D004859 ORTHO05D005807 6.5e-44 180.6 107 82.2
Gohir.A13G154200 Gossypium hirsutum HOM05D004859 ORTHO05D005807 6.5e-44 180.6 107 78.5
Gohir.D13G158900 Gossypium hirsutum HOM05D004859 ORTHO05D005807 6.5e-44 180.6 107 78.5
Gorai.013G179600 Gossypium raimondii HOM05D004859 ORTHO05D005807 6.5e-44 180.6 107 78.5
Ah.06g195490 Amaranthus hybridus HOM05D004859 ORTHO05D005807 1.1e-43 179.9 107 80.4
Gohir.D04G025700 Gossypium hirsutum HOM05D004859 ORTHO05D005807 1.1e-43 179.9 107 78.5
Gorai.012G028300 Gossypium raimondii HOM05D004859 ORTHO05D005807 1.1e-43 179.9 107 78.5
CSS0011817 Camellia sinensis var. sinensis HOM05D004859 ORTHO05D005807 1.5e-43 179.5 107 80.4
Glyma.18G241900 Glycine max HOM05D004859 ORTHO05D005807 1.5e-43 179.5 107 79.4
Gohir.A05G391600 Gossypium hirsutum HOM05D004859 ORTHO05D005807 1.9e-43 179.1 107 78.5
RcHm_v2.0_Chr3g0447891 Rosa chinensis HOM05D004859 ORTHO05D005807 2.5e-43 178.7 107 81.3
Lsat_1_v5_gn_8_2360 Lactuca sativa HOM05D004859 ORTHO05D005807 3.2e-43 178.3 108 77.8
Nn7g37400 Nelumbo nucifera HOM05D004859 ORTHO05D005807 3.2e-43 178.3 107 79.4
ClCG03G010710 Citrullus lanatus HOM05D004859 ORTHO05D005807 4.2e-43 177.9 107 80.4
ECA233G5366 Erigeron canadensis HOM05D004859 ORTHO05D005807 4.2e-43 177.9 107 80.4
CSS0045397 Camellia sinensis var. sinensis HOM05D004859 ORTHO05D005807 5.5e-43 177.6 107 78.5
Medtr7g079990 Medicago truncatula HOM05D004859 ORTHO05D005807 5.5e-43 177.6 107 79.4
Phvul.008G054200 Phaseolus vulgaris HOM05D004859 ORTHO05D005807 5.5e-43 177.6 108 76.9
THA.LOC104827174 Tarenaya hassleriana HOM05D004859 ORTHO05D005807 5.5e-43 177.6 107 78.5
Aa31LG5G13260 Aethionema arabicum HOM05D004859 ORTHO05D005807 7.2e-43 177.2 107 77.6
CiPaw.07G080000 Carya illinoinensis HOM05D004859 ORTHO05D005807 7.2e-43 177.2 107 78.5
Cc09_g03620 Coffea canephora HOM05D004859 ORTHO05D005807 9.4e-43 176.8 110 75.5
FvH4_6g00510 Fragaria vesca HOM05D004859 ORTHO05D005807 9.4e-43 176.8 107 78.5
FAN09G3430 Fragaria x ananassa HOM05D004859 ORTHO05D005807 9.4e-43 176.8 107 78.5
FAN14G1059 Fragaria x ananassa HOM05D004859 ORTHO05D005807 9.4e-43 176.8 107 78.5
Gorai.004G261900 Gossypium raimondii HOM05D004859 ORTHO05D005807 9.4e-43 176.8 107 79.4
MBI18_g38869_MAGBIO Magnolia biondii HOM05D004859 ORTHO05D005807 9.4e-43 176.8 107 79.4
Oeu020252.1 Olea europaea HOM05D004859 ORTHO05D005807 9.4e-43 176.8 107 79.4
Peaxi162Scf00344g00092 Petunia axillaris HOM05D004859 ORTHO05D005807 9.4e-43 176.8 107 80.4
Potri.013G086400 Populus trichocarpa HOM05D004859 ORTHO05D005807 9.4e-43 176.8 107 80.4
Haze_04552 Corylus avellana HOM05D004859 ORTHO05D005807 1.2e-42 176.4 107 79.4
MELO3C010059.2 Cucumis melo HOM05D004859 ORTHO05D005807 1.6e-42 176.0 107 78.5
Sopen04g025250 Solanum pennellii HOM05D004859 ORTHO05D005807 1.6e-42 176.0 107 78.5
CAN.G217.12 Capsicum annuum HOM05D004859 ORTHO05D005807 2.1e-42 175.6 107 77.6
Duzib177G0866 Durio zibethinus HOM05D004859 ORTHO05D005807 2.1e-42 175.6 107 76.6
Migut.F02136 Erythranthe guttata HOM05D004859 ORTHO05D005807 2.1e-42 175.6 106 79.2
Gohir.D08G245400 Gossypium hirsutum HOM05D004859 ORTHO05D005807 2.1e-42 175.6 107 79.4
Solyc04g056350.1 Solanum lycopersicum HOM05D004859 ORTHO05D005807 2.1e-42 175.6 107 77.6
TWI18G1000 Tripterygium wilfordii HOM05D004859 ORTHO05D005807 2.1e-42 175.6 107 78.5
CDE12G0839 Ceratophyllum demersum HOM05D004859 ORTHO05D005807 2.7e-42 175.3 107 77.6
SEGI_19955 Sequoiadendron giganteum HOM05D004859 ORTHO05D005807 3.6e-42 174.9 107 76.6
COL.COLO4_19821 Corchorus olitorius HOM05D004859 ORTHO05D005807 4.7e-42 174.5 107 77.6
HanXRQChr11g0333601 Helianthus annuus HOM05D004859 ORTHO05D005807 4.7e-42 174.5 107 77.6
Nitab4.5_0001435g0020 Nicotiana tabacum HOM05D004859 ORTHO05D005807 4.7e-42 174.5 107 78.5
Oeu062049.1 Olea europaea HOM05D004859 ORTHO05D005807 4.7e-42 174.5 107 77.6
Duzib128G0817 Durio zibethinus HOM05D004859 ORTHO05D005807 6.1e-42 174.1 107 76.6
Ca_07986_v3 Cicer arietinum L. HOM05D004859 ORTHO05D005807 8.0e-42 173.7 107 76.6
ECA238G2179 Erigeron canadensis HOM05D004859 ORTHO05D005807 8.0e-42 173.7 107 76.6
FAN05G4796 Fragaria x ananassa HOM05D004859 ORTHO05D005807 8.0e-42 173.7 107 79.4
Sed0011478 Sechium edule HOM05D004859 ORTHO05D005807 8.0e-42 173.7 107 76.6
THA.LOC104802953 Tarenaya hassleriana HOM05D004859 ORTHO05D005807 8.0e-42 173.7 107 74.8
Lsat_1_v5_gn_2_18260 Lactuca sativa HOM05D004859 ORTHO05D005807 1.0e-41 173.3 107 78.5
unitig_749.g13492 Utricularia gibba HOM05D004859 ORTHO05D005807 1.4e-41 172.9 107 76.6
VMungo1383G1359 Vigna mungo HOM05D004859 ORTHO05D005807 1.4e-41 172.9 107 75.7
CANSAT54G1839 Cannabis sativa HOM05D004859 ORTHO05D005807 1.8e-41 172.6 107 75.7
QL01p048380 Quercus lobata HOM05D004859 ORTHO05D005807 1.8e-41 172.6 107 77.6
Gohir.A08G225000 Gossypium hirsutum HOM05D004859 ORTHO05D005807 2.3e-41 172.2 105 78.1
Nitab4.5_0000083g0160 Nicotiana tabacum HOM05D004859 ORTHO05D005807 2.3e-41 172.2 107 77.6
Atru.chr12.1788 Acer truncatum HOM05D004859 ORTHO05D005807 3.0e-41 171.8 107 73.8
Prupe.6G361200 Prunus persica HOM05D004859 ORTHO05D005807 3.0e-41 171.8 115 73.0
Thecc.05G199300 Theobroma cacao HOM05D004859 ORTHO05D005807 3.0e-41 171.8 107 76.6
Manes.13G005600 Manihot esculenta HOM05D004859 ORTHO05D005807 4.0e-41 171.4 107 77.6
Psat3g138280 Pisum sativum HOM05D004859 ORTHO05D005807 4.0e-41 171.4 107 75.7
AUR62000312 Chenopodium quinoa HOM05D004859 ORTHO05D005807 5.2e-41 171.0 107 77.6
CsaV3_1G044540 Cucumis sativus L. HOM05D004859 ORTHO05D005807 5.2e-41 171.0 107 76.6
TPR.G30708 Trifolium pratense HOM05D004859 ORTHO05D005807 5.2e-41 171.0 107 75.7
Potri.019G053500 Populus trichocarpa HOM05D004859 ORTHO05D005807 6.8e-41 170.6 113 74.3
SalBow6G1022 Salvia bowleyana HOM05D004859 ORTHO05D005807 6.8e-41 170.6 107 77.6
A03p07800 Brassica napus HOM05D004859 ORTHO05D005807 8.8e-41 170.2 108 76.9
BraA03t10107Z Brassica rapa HOM05D004859 ORTHO05D005807 8.8e-41 170.2 108 76.9
MD04G1244600 Malus domestica HOM05D004859 ORTHO05D005807 8.8e-41 170.2 111 73.9
PGSC0003DMG400007259 Solanum tuberosum HOM05D004859 ORTHO05D005807 8.8e-41 170.2 107 74.8
BcaB01g04980 Brassica carinata HOM05D004859 ORTHO05D005807 1.2e-40 169.9 107 75.7
BolC3t13398H Brassica oleracea HOM05D004859 ORTHO05D005807 1.2e-40 169.9 107 75.7
AUR62006657 Chenopodium quinoa HOM05D004859 ORTHO05D005807 1.5e-40 169.5 107 76.6
Ciclev10013411m.g Citrus clementina HOM05D004859 ORTHO05D005807 1.5e-40 169.5 107 73.8
TWI36G0708 Tripterygium wilfordii HOM05D004859 ORTHO05D005807 1.5e-40 169.5 107 74.8
GSVIVG01019111001 Vitis vinifera HOM05D004859 ORTHO05D005807 1.5e-40 169.5 112 72.3
Carub.0003s0189 Capsella rubella HOM05D004859 ORTHO05D005807 2.0e-40 169.1 107 73.8
Manes.12G005900 Manihot esculenta HOM05D004859 ORTHO05D005807 2.0e-40 169.1 107 75.7
Cpa.g.sc39.7 Carica papaya HOM05D004859 ORTHO05D005807 2.6e-40 168.7 107 75.7
MD12G1260500 Malus domestica HOM05D004859 ORTHO05D005807 2.6e-40 168.7 110 72.7
ATR0568G125 Amborella trichopoda HOM05D004859 ORTHO05D005807 3.4e-40 168.3 107 74.8
CANSAT35G0417 Cannabis sativa HOM05D004859 ORTHO05D005807 3.4e-40 168.3 107 73.8
Sp3g01820 Schrenkiella parvula HOM05D004859 ORTHO05D005807 3.4e-40 168.3 107 73.8
EL10Ac4g09966 Beta vulgaris HOM05D004859 ORTHO05D005807 4.4e-40 167.9 103 77.7
BcaC05g30510 Brassica carinata HOM05D004859 ORTHO05D005807 7.5e-40 167.2 107 72.9
A02p03550 Brassica napus HOM05D004859 ORTHO05D005807 7.5e-40 167.2 107 75.7
C09p75910 Brassica napus HOM05D004859 ORTHO05D005807 7.5e-40 167.2 107 72.9
Eucgr.H01388 Eucalyptus grandis HOM05D004859 ORTHO05D005807 7.5e-40 167.2 107 73.8
BcaC03g18492 Brassica carinata HOM05D004859 ORTHO05D005807 9.8e-40 166.8 107 75.7
HPP92_025926 Vanilla planifolia HOM05D004859 ORTHO05D005807 9.8e-40 166.8 106 75.5
A10p22730 Brassica napus HOM05D004859 ORTHO05D005807 1.3e-39 166.4 107 75.7
BraA02t05326Z Brassica rapa HOM05D004859 ORTHO05D005807 1.3e-39 166.4 107 75.7
BraA10t44336Z Brassica rapa HOM05D004859 ORTHO05D005807 1.3e-39 166.4 107 75.7
CARHR196760 Cardamine hirsuta HOM05D004859 ORTHO05D005807 1.3e-39 166.4 107 75.7
unitig_26.g9580 Utricularia gibba HOM05D000798 ORTHO05D000659 1.3e-39 166.4 107 73.8
AL3G12200 Arabidopsis lyrata HOM05D004859 ORTHO05D005807 2.8e-39 165.2 107 72.9
BcaB08g36850 Brassica carinata HOM05D004859 ORTHO05D005807 2.8e-39 165.2 107 74.8
BcaC04g18876 Brassica carinata HOM05D004859 ORTHO05D005807 2.8e-39 165.2 107 74.8
BcaC05g30507 Brassica carinata HOM05D004859 ORTHO05D005807 2.8e-39 165.2 107 72.0
C09p60710 Brassica napus HOM05D004859 ORTHO05D005807 2.8e-39 165.2 107 74.8
BolC5t35066H Brassica oleracea HOM05D004859 ORTHO05D005807 2.8e-39 165.2 107 72.9
BolC9t58902H Brassica oleracea HOM05D004859 ORTHO05D005807 2.8e-39 165.2 107 74.8
Sp6g27710 Schrenkiella parvula HOM05D004859 ORTHO05D005807 2.8e-39 165.2 107 74.8
Thhalv10015095m.g Eutrema salsugineum HOM05D004859 ORTHO05D005807 3.7e-39 164.9 107 74.8
Sabra13G0077700 Salix brachista HOM05D004859 ORTHO05D005807 4.8e-39 164.5 100 79.0
CARHR076800 Cardamine hirsuta HOM05D004859 ORTHO05D005807 8.3e-39 163.7 107 72.0
Actinidia38902 Actinidia chinensis HOM05D004859 ORTHO05D005807 1.1e-38 163.3 100 78.0
SHI13720 Sapria himalayana HOM05D004859 ORTHO05D005807 1.1e-38 163.3 110 71.8
AT3G02790 Arabidopsis thaliana HOM05D004859 ORTHO05D005807 1.4e-38 162.9 107 72.0
Pp3c26_1250 Physcomitrium patens HOM05D004859 ORTHO05D005807 1.4e-38 162.9 107 72.9
AL6G27410 Arabidopsis lyrata HOM05D004859 ORTHO05D005807 2.4e-38 162.2 107 73.8
AT5G16470 Arabidopsis thaliana HOM05D004859 ORTHO05D005807 2.4e-38 162.2 107 73.8
BolC2t06754H Brassica oleracea HOM05D004859 ORTHO05D005807 2.4e-38 162.2 107 73.8
Carub.0006s1467 Capsella rubella HOM05D004859 ORTHO05D005807 2.4e-38 162.2 107 73.8
Pp3c9_1130 Physcomitrium patens HOM05D004859 ORTHO05D005807 2.0e-37 159.1 107 72.0
Zm00001eb272650 Zea mays HOM05D004859 ORTHO05D005807 2.7e-37 158.7 108 71.3
HanXRQChr09g0244001 Helianthus annuus HOM05D004859 ORTHO05D005807 7.7e-37 157.1 107 72.9
Aa31LG11G13190 Aethionema arabicum HOM05D004859 ORTHO05D005807 1.0e-36 156.8 107 71.0
Mapoly0153s0037 Marchantia polymorpha HOM05D004859 ORTHO05D005807 1.0e-36 156.8 107 69.2
Pp3c15_1090 Physcomitrium patens HOM05D004859 ORTHO05D005807 3.8e-36 154.8 107 69.2
SMO361G0285 Selaginella moellendorffii HOM05D004859 ORTHO05D005807 1.5e-35 152.9 107 71.0
Os06g0708600 Oryza sativa ssp. japonica HOM05D004859 ORTHO05D005807 7.2e-35 150.6 114 65.8
Zm00001eb227470 Zea mays HOM05D004859 ORTHO05D005807 7.2e-35 150.6 118 63.6
VMungo0464G0653 Vigna mungo HOM05D004859 ORTHO05D005807 4.3e-27 124.8 80 70.0
A05p44330 Brassica napus HOM05D004859 ORTHO05D005807 4.7e-26 121.3 79 74.7
BraA06t23289Z Brassica rapa HOM05D004859 ORTHO05D005807 4.7e-26 121.3 79 74.7
RcHm_v2.0_Chr1g0316641 Rosa chinensis HOM05D004859 ORTHO05D005807 3.7e-23 111.7 72 72.2
Cre09.g416500 Chlamydomonas reinhardtii HOM05D004859 ORTHO05D005807 1.2e-21 106.7 105 55.2
Nn1g09361 Nelumbo nucifera HOM05D004859 ORTHO05D005807 2.5e-19 99.0 52 86.5
PRCOL_00002520 Prasinoderma coloniale HOM05D004859 ORTHO05D005807 7.3e-19 97.4 108 50.9
Nn1g01054 Nelumbo nucifera HOM05D004859 ORTHO05D005807 1.6e-18 96.3 56 76.8
AUR62006656 Chenopodium quinoa HOM05D004859 ORTHO05D005807 2.0e-16 89.4 90 47.8
BcaB08g36851 Brassica carinata HOM05D004859 ORTHO05D005807 5.4e-14 81.3 107 47.7
SHI22764 Sapria himalayana HOM05D004859 ORTHO05D005807 1.8e-09 66.2 72 48.6
Dinv29105 Davidia involucrata HOM05D004859 ORTHO05D005807 5.4e-06 54.7 28 92.9
SalBow8G5177 Salvia bowleyana HOM05D001879 ORTHO05D007957 5.4e-06 54.7 97 41.2
SHI07073 Sapria himalayana HOM05D004859 ORTHO05D005807 9.2e-06 53.9 77 42.9


User provided reference genes

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